jgi.p|Nanoce1779_2|584673, mRNA_3130 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584673
Unique NamemRNA_3130
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1268
Alignment locationscaffold_7:726654..727921 +

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Properties
Property NameValue
TranscriptId584759
TrackFilteredModels2
ProteinId584673
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:726654..727921 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584673gene_3130Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584673mRNA_3130-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3130CDS_3130Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3130 ID=mRNA_3130|Name=jgi.p|Nanoce1779_2|584673|organism=Nannochloropsis oceanica|type=mRNA|length=1268bp
GCCGGCGATACGTGCCCTCAGCCTCCCACCCCACTCTTTTACCGCGATCT
AACGACGCATTTCTTCCCACTTACCCACAGAATGTCTTGTACAGACGAGG
ATTATGAAGATGACGTTGTGGACTGCCCATCTATCCCGGTCTCGGTGTCG
CAATATTGTCGTCTACGCAGTGGGAAGAGGGGTCGCATAGTTAAGGCGGC
CCAGGCCATTCCCTCTCCTGGCACGACAGTCCTCCGAGATGACCCCTTTG
CCGCCGTAGTTTCCGACACATACCGGAGTGTTTGTTGTGCCTGTTGTCTG
CATGTCTGCACGACTCAGATTTTTGTCTGTGGGGGTTGCTCCGTTACGTT
CTATTGCTCTACTGAATGCATTGCGCGAGATGGGGCCCTGGTGCACACGG
GACTGGAATGCCAGGCATTAAAAAAGCTAAACGCGATGGGTGTGGAGGGT
GATTCACAGGCAATGCGATTGGCCTTACGCTTGGTACGTGAAATTTGGGT
TCATATGCACTGATCGATTGTATTTAGAGATGCAGATTAGGGAATAAGGG
TTGGTAGGTTGCAATGGGGATTAATATTTTGACTGCAAGTCGGCGTGAGA
AAGACAGCATATACAAGTAGCTTATAATTTAAAATGAGTTGTATTAAGTC
TGTACAATTGCTGTTAATGCAATCCTCCTTTCTTGCGCCCGTTTTTCAAC
ACAGGCGTGTCTTGCCAAGAAGAAGGAAGATGCCGTCGTCGATAGGACTA
GCAGCAGCAATACCACTCCAGCTCCACCTGTCTTCCACTCCCCTGCCTTC
ATTTTTACCTTGGAAGATCACTATGACAACGTTATGCAAGACCTCGCAGT
CCGTCGAGGCATTCTTGCTGTAGCAGAAGCCCTCTCCAGTTTCCTCAACA
GCAGCAGCGGCACCTCCACCACCATCACAGCCCCTACATCACGCAAAGAA
ATTGCGTCCCTCTTGCTCACGATCCAATGTAACGCCCACGGTATACGCAA
TTCTCTGGGGCAGATGCTAGGCCTTGGGCTATTTCCTCTCGCGTCAATGC
TGAATCATTCTTGCCTTCCTTCATGCCACCATGTCTTTTCCCTCCATCCT
GGGCAAGGACCACCAACCTTAACTTTCAAAACTTTGCGTCCGATTCAAGA
AGGTGAAGAGCTTGTGTATAGCTACACGGACTTGATGCGGCCAGGGGGAA
TGCGAAGGGAGATATTAGGGAGGGCTTACTCTTTCACGTGTGCGTGTGCG
AGGTGTCTGATAACTCTA
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protein sequence of jgi.p|Nanoce1779_2|584673

>mRNA_3130-protein ID=mRNA_3130-protein|Name=jgi.p|Nanoce1779_2|584673|organism=Nannochloropsis oceanica|type=polypeptide|length=144bp
MSCTDEDYEDDVVDCPSIPVSVSQYCRLRSGKRGRIVKAAQAIPSPGTTV
LRDDPFAAVVSDTYRSVCCACCLHVCTTQIFVCGGCSVTFYCSTECIARD
GALVHTGLECQALKKLNAMGVEGDSQAMRLALRLVREIWVHMH*
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mRNA from alignment at scaffold_7:726654..727921+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3130 ID=mRNA_3130|Name=jgi.p|Nanoce1779_2|584673|organism=Nannochloropsis oceanica|type=mRNA|length=1268bp|location=Sequence derived from alignment at scaffold_7:726654..727921+ (Nannochloropsis oceanica)
GCCGGCGATACGTGCCCTCAGCCTCCCACCCCACTCTTTTACCGCGATCT
AACGACGCATTTCTTCCCACTTACCCACAGAATGTCTTGTACAGACGAGG
ATTATGAAGATGACGTTGTGGACTGCCCATCTATCCCGGTCTCGGTGTCG
CAATATTGTCGTCTACGCAGTGGGAAGAGGGGTCGCATAGTTAAGGCGGC
CCAGGCCATTCCCTCTCCTGGCACGACAGTCCTCCGAGATGACCCCTTTG
CCGCCGTAGTTTCCGACACATACCGGAGTGTTTGTTGTGCCTGTTGTCTG
CATGTCTGCACGACTCAGATTTTTGTCTGTGGGGGTTGCTCCGTTACGTT
CTATTGCTCTACTGAATGCATTGCGCGAGATGGGGCCCTGGTGCACACGG
GACTGGAATGCCAGGCATTAAAAAAGCTAAACGCGATGGGTGTGGAGGGT
GATTCACAGGCAATGCGATTGGCCTTACGCTTGGTACGTGAAATTTGGGT
TCATATGCACTGATCGATTGTATTTAGAGATGCAGATTAGGGAATAAGGG
TTGGTAGGTTGCAATGGGGATTAATATTTTGACTGCAAGTCGGCGTGAGA
AAGACAGCATATACAAGTAGCTTATAATTTAAAATGAGTTGTATTAAGTC
TGTACAATTGCTGTTAATGCAATCCTCCTTTCTTGCGCCCGTTTTTCAAC
ACAGGCGTGTCTTGCCAAGAAGAAGGAAGATGCCGTCGTCGATAGGACTA
GCAGCAGCAATACCACTCCAGCTCCACCTGTCTTCCACTCCCCTGCCTTC
ATTTTTACCTTGGAAGATCACTATGACAACGTTATGCAAGACCTCGCAGT
CCGTCGAGGCATTCTTGCTGTAGCAGAAGCCCTCTCCAGTTTCCTCAACA
GCAGCAGCGGCACCTCCACCACCATCACAGCCCCTACATCACGCAAAGAA
ATTGCGTCCCTCTTGCTCACGATCCAATGTAACGCCCACGGTATACGCAA
TTCTCTGGGGCAGATGCTAGGCCTTGGGCTATTTCCTCTCGCGTCAATGC
TGAATCATTCTTGCCTTCCTTCATGCCACCATGTCTTTTCCCTCCATCCT
GGGCAAGGACCACCAACCTTAACTTTCAAAACTTTGCGTCCGATTCAAGA
AGGTGAAGAGCTTGTGTATAGCTACACGGACTTGATGCGGCCAGGGGGAA
TGCGAAGGGAGATATTAGGGAGGGCTTACTCTTTCACGTGTGCGTGTGCG
AGGTGTCTGATAACTCTA
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Coding sequence (CDS) from alignment at scaffold_7:726654..727921+

>mRNA_3130 ID=mRNA_3130|Name=jgi.p|Nanoce1779_2|584673|organism=Nannochloropsis oceanica|type=CDS|length=432bp|location=Sequence derived from alignment at scaffold_7:726654..727921+ (Nannochloropsis oceanica)
ATGTCTTGTACAGACGAGGATTATGAAGATGACGTTGTGGACTGCCCATC
TATCCCGGTCTCGGTGTCGCAATATTGTCGTCTACGCAGTGGGAAGAGGG
GTCGCATAGTTAAGGCGGCCCAGGCCATTCCCTCTCCTGGCACGACAGTC
CTCCGAGATGACCCCTTTGCCGCCGTAGTTTCCGACACATACCGGAGTGT
TTGTTGTGCCTGTTGTCTGCATGTCTGCACGACTCAGATTTTTGTCTGTG
GGGGTTGCTCCGTTACGTTCTATTGCTCTACTGAATGCATTGCGCGAGAT
GGGGCCCTGGTGCACACGGGACTGGAATGCCAGGCATTAAAAAAGCTAAA
CGCGATGGGTGTGGAGGGTGATTCACAGGCAATGCGATTGGCCTTACGCT
TGGTACGTGAAATTTGGGTTCATATGCACTGA
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Synonyms
Publications