jgi.p|Nanoce1779_2|576902, mRNA_313 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576902
Unique Name	mRNA_313
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1842
Alignment location	scaffold_3:775143..777240 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576988
Track	FilteredModels2
ProteinId	576902

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:775143..777240 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576902	gene_313	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576902	mRNA_313-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_313	CDS_313	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:775143..777240+
coding sequence from alignment at scaffold_3:775143..777240+

mRNA sequence

>mRNA_313 ID=mRNA_313|Name=jgi.p|Nanoce1779_2|576902|organism=Nannochloropsis oceanica|type=mRNA|length=1842bp
AGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAG
GAGCAGGAGGAGCCGGTGGAGGAGGTCGGTTGAAAAAGCTCAGTCGGGCC
GTGACCGCACAGCAAGCAGCTGCAGCAGCCTCCGCAGTCAAGCGGAAGAA
GAAGCGGCGGAACTTCCAGGGGAATGTGATCAAGGGCGAGCATGAACAAT
ATACCTTAACGATAGGCATGATGCTTGGCATCCGGGTGGCCGTGGGGCGG
CCTCAGCAGATGGATGATCTGACCTTGATGGATTTCATGCAAGTTGACAA
GTACCTCTTTCCCCCGAAAGGTTGTAACAAGCCTCCTCATCGCACCCCCC
CTCACCATCTCTCTCATGACTTCAAATTCAAGGACTATGCACCCAAGATA
TTCCATCGCATCCGGCAGTTGTTTGGGATTGACTCGGCCTCGTATATGTT
GTCTGTGAGTGGGAATTATAATTACCTTGAGTTCATGTCCAATTCCAAGA
GTGGGCAATTCTTCTTCTACTCGCACGACGGTCGGTTCATGATCAAGACC
CAGACATCGGAGGAGAACAAATTCTTGCGGAAAATTCTCCCGCATTACTA
CCAGTACGTGTCGCTGAATCCCAACACGTTGTTGACGCGGTTCTACGGCA
TGCATCGGGTAAAAATGCGGCATTTGAAGCGAAAAGTCCACTTTGTCATC
ATGCATTCCGTGTTTGATACCAAGGAAAAGATATTTCGCATTTACGATCT
TAAGGGCTCGACGGTGGGGAGGTCTTCGGGTCCGGACAAGGTGCGGAAGG
AGGGAGTAGTGTACAAAGACCTGGACCTGGTGGACGATCAGGCGAAATTC
CAGTTGGGCACGAAAAGGAAGCTGTTTATGGAGCAGTTGGAAAAGGATGC
GAGTTTTTTGGCGAGCCTGAATATCATGGACTATTCCCTGTTGATTGGCA
TTCATGACGAGGCGAGGCGGGACGAGTTCGCGGAACGAGGCGTCTCCATG
TCCAGCCCCATCACGGGCAGTGGCGGCGACGGCAGCGGTGGCGAAGGAGG
AGGAGGAGGAGATGTACTGGATGATCCAGGTGCCATGCTTGGTGTGTCTT
CCCATCCCTACGTGGAGGGCTCCGAGCCTCTGCACCACCACCCTTCAGCA
CCGCTCCCTCCCTCCCTCCTTCCCCATTCCCAACATAAGCCTTCGGGGGG
ACCAGTGCAGTCTTTCCTCCCTCGCTCTCGTCGGGAGTATAGCTATGAAT
CTGAAGGTGCGCACAGCCAAAGTGTTGGTGGTGGGGGATATGCTTCGCAT
GATGGGGATGGGGGGGAGGAGGATAATTATCAAAGTTACGATGAGTCGGA
TTTTGATTCGGACGCGTCGTTGGAATCGGATGAGGATGATATCCCTCTTC
CTCCTTCCATGCTTGCTGCTGGATTCAGCGGTCCAAATAACAATGAATTC
AGCTACACAAGTGGGGAGAAGCCGCCGTTGGGATTGCCGACCGAGGCGTC
GATTTTGACGTCAACGACGAACGAGCGGAGGCTGACTCATCGGAGGGACC
ATGGAGTTCAGAGTCGGCTGGTGGATGGGAGTAAGGGCAGTGAAGTGTAC
TTCGTGGGGGTGATTGACATATTGCAGCAGTACAATGCCTTGAAGCGGGC
GGAGACATTTTTCAAGAGCTTCAAGTACGATAGCAGACAGATCTCAGCGG
TGGACCCGAAGTGGTACGCGAAACGGTTTGTGGACTTCACAGCGAGCCAC
ATCCAGTGAGGGAGGGTATGATAGGAGGAGCGGTGGGAAGGTTTGTAGAG
GTTTCGGGGAGCCATGTTCAGAGATATGGACGGGTGGGAAGG

protein sequence of jgi.p|Nanoce1779_2|576902

>mRNA_313-protein ID=mRNA_313-protein|Name=jgi.p|Nanoce1779_2|576902|organism=Nannochloropsis oceanica|type=polypeptide|length=514bp
MMLGIRVAVGRPQQMDDLTLMDFMQVDKYLFPPKGCNKPPHRTPPHHLSH
DFKFKDYAPKIFHRIRQLFGIDSASYMLSVSGNYNYLEFMSNSKSGQFFF
YSHDGRFMIKTQTSEENKFLRKILPHYYQYVSLNPNTLLTRFYGMHRVKM
RHLKRKVHFVIMHSVFDTKEKIFRIYDLKGSTVGRSSGPDKVRKEGVVYK
DLDLVDDQAKFQLGTKRKLFMEQLEKDASFLASLNIMDYSLLIGIHDEAR
RDEFAERGVSMSSPITGSGGDGSGGEGGGGGDVLDDPGAMLGVSSHPYVE
GSEPLHHHPSAPLPPSLLPHSQHKPSGGPVQSFLPRSRREYSYESEGAHS
QSVGGGGYASHDGDGGEEDNYQSYDESDFDSDASLESDEDDIPLPPSMLA
AGFSGPNNNEFSYTSGEKPPLGLPTEASILTSTTNERRLTHRRDHGVQSR
LVDGSKGSEVYFVGVIDILQQYNALKRAETFFKSFKYDSRQISAVDPKWY
AKRFVDFTASHIQ*

mRNA from alignment at scaffold_3:775143..777240+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_313 ID=mRNA_313|Name=jgi.p|Nanoce1779_2|576902|organism=Nannochloropsis oceanica|type=mRNA|length=2098bp|location=Sequence derived from alignment at scaffold_3:775143..777240+ (Nannochloropsis oceanica)
AGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAG
GAGCAGGAGGAGCCGGTGGAGGAGGTCGGTTGAAAAAGCTCAGTCGGGCC
GTGACCGCACAGCAAGCAGCTGCAGCAGCCTCCGCAGTCAAGCGGAAGAA
GAAGCGGCGGAACTTCCAGGGGAATGTGATCAAGGGCGAGCATGAACAAT
ATACCTTAACGATAGGCATGATGCTTGGCATCCGGGTGGCCGTGGGGCGG
CCTCAGCAGATGGATGATCTGACCTTGATGGATTTCATGCAAGTTGACAA
GTACCTCTTTCCCCCGAAAGGTTGTAACAAGCCTCCTCATCGCACCCCCC
CTCACCATCTCTCTCATGACTTCAAATTCAAGGACTATGCACCCAAGATA
TTCCATCGCATCCGGCAGTTGTTTGGGATTGACTCGGCCTCGTATATGTT
GTCTGTGAGTGGGAATTATAATTACCTTGAGTTCATGTCCAATTCCAAGA
GTGGGCAATTCTTCTTCTACTCGCACGACGGTCGGTTCATGATCAAGACC
CAGACATCGGAGGAGAACAAATTCTTGCGGAAAATTCTCCCGCATTACTA
CCAGTACGTGTCGCTGAATCCCAACACGTTGTTGACGCGGTTCTACGGCA
TGCATCGGGTAAAAATGCGGCATTTGAAGCGAAAAGTCCACTTTGTCATC
ATGCATTCCGTGTTTGATACCAAGGAAAAGATATTTCGCATTTACGATCT
TAAGGGCTCGACGGTGGGGAGGTCTTCGGGTCCGGACAAGGTGCGGAAGG
AGGGAGTAGTGTACAAAGACCTGGACCTGGTGGACGATCAGGCGAAATTC
CAGTTGGGCACGAAAAGGAAGCTGTTTATGGAGCAGTTGGAAAAGGATGC
GAGTTTTTTGGCGAGCCTGAATATCATGGACTATTCCCTGTTGATTGGCA
TTCATGACGAGGCGAGGTAAGGGCTGCGAGGGAGGAATACAGGGAAGGGG
CAAGAGGGGGAAAAGTGTTTTTTCATCCTGACAGCCATCTACCACAACCG
CAACTTCCGTTTCTTCCGTTCTCTGTCTCACCCACACTCTCTTCTTTCTC
TTTCACAAACACGCAATCTTTATCATACACAAAGACGCAGTCTCTATCTC
GCTCTCACACACACACGCACAAACGCACACTCTCTCTATCCCTCTATCTC
TCTATCTCTCACGAACACACAGGCGGGACGAGTTCGCGGAACGAGGCGTC
TCCATGTCCAGCCCCATCACGGGCAGTGGCGGCGACGGCAGCGGTGGCGA
AGGAGGAGGAGGAGGAGATGTACTGGATGATCCAGGTGCCATGCTTGGTG
TGTCTTCCCATCCCTACGTGGAGGGCTCCGAGCCTCTGCACCACCACCCT
TCAGCACCGCTCCCTCCCTCCCTCCTTCCCCATTCCCAACATAAGCCTTC
GGGGGGACCAGTGCAGTCTTTCCTCCCTCGCTCTCGTCGGGAGTATAGCT
ATGAATCTGAAGGTGCGCACAGCCAAAGTGTTGGTGGTGGGGGATATGCT
TCGCATGATGGGGATGGGGGGGAGGAGGATAATTATCAAAGTTACGATGA
GTCGGATTTTGATTCGGACGCGTCGTTGGAATCGGATGAGGATGATATCC
CTCTTCCTCCTTCCATGCTTGCTGCTGGATTCAGCGGTCCAAATAACAAT
GAATTCAGCTACACAAGTGGGGAGAAGCCGCCGTTGGGATTGCCGACCGA
GGCGTCGATTTTGACGTCAACGACGAACGAGCGGAGGCTGACTCATCGGA
GGGACCATGGAGTTCAGAGTCGGCTGGTGGATGGGAGTAAGGGCAGTGAA
GTGTACTTCGTGGGGGTGATTGACATATTGCAGCAGTACAATGCCTTGAA
GCGGGCGGAGACATTTTTCAAGAGCTTCAAGTACGATAGCAGACAGATCT
CAGCGGTGGACCCGAAGTGGTACGCGAAACGGTTTGTGGACTTCACAGCG
AGCCACATCCAGTGAGGGAGGGTATGATAGGAGGAGCGGTGGGAAGGTTT
GTAGAGGTTTCGGGGAGCCATGTTCAGAGATATGGACGGGTGGGAAGG

Coding sequence (CDS) from alignment at scaffold_3:775143..777240+

>mRNA_313 ID=mRNA_313|Name=jgi.p|Nanoce1779_2|576902|organism=Nannochloropsis oceanica|type=CDS|length=3084bp|location=Sequence derived from alignment at scaffold_3:775143..777240+ (Nannochloropsis oceanica)
ATGATGCTTGGCATCCGGGTGGCCGTGGGGCGGCCTCAGCAGATGGATGA
TCTGACCTTGATGGATTTCATGCAAGTTGACAAGTACCTCTTTCCCCCGA
AAGGTTGTAACAAGCCTCCTCATCGCACCCCCCCTCACCATCTCTCTCAT
GACTTCAAATTCAAGGACTATGCACCCAAGATATTCCATCGCATCCGGCA
GTTGTTTGGGATTGACTCGGCCTCGTATATGTTGTCTGTGAGTGGGAATT
ATAATTACCTTGAGTTCATGTCCAATTCCAAGAGTGGGCAATTCTTCTTC
TACTCGCACGACGGTCGGTTCATGATCAAGACCCAGACATCGGAGGAGAA
CAAATTCTTGCGGAAAATTCTCCCGCATTACTACCAGTACGTGTCGCTGA
ATCCCAACACGTTGTTGACGCGGTTCTACGGCATGCATCGGGTAAAAATG
CGGCATTTGAAGCGAAAAGTCCACTTTGTCATCATGCATTCCGTGTTTGA
TACCAAGGAAAAGATATTTCGCATTTACGATCTTAAGGGCTCGACGGTGG
GGAGGTCTTCGGGTCCGGACAAGGTGCGGAAGGAGGGAGTAGTGTACAAA
GACCTGGACCTGGTGGACGATCAGGCGAAATTCCAGTTGGGCACGAAAAG
GAAGCTGTTTATGGAGCAGTTGGAAAAGGATGCGAGTTTTTTGGCGAGCC
TGAATATCATGGACTATTCCCTGTTGATTGGCATTCATGACGAGGCGAGG
CGGGACGAGTTCGCGGAACGAGGCGTCTCCATGTCCAGCCCCATCACGGG
CAGTGGCGGCGACGGCAGCGGTGGCGAAGGAGGAGGAGGAGGAGATGTAC
TGGATGATCCAGGTGCCATGCTTGGTGTGTCTTCCCATCCCTACGTGGAG
GGCTCCGAGCCTCTGCACCACCACCCTTCAGCACCGCTCCCTCCCTCCCT
CCTTCCCCATTCCCAACATAAGCCTTCGGGGGGACCAGTGCAGTCTTTCC
TCCCTCGCTCTCGTCGGGAGTATAGCTATGAATCTGAAGGTGCGCACAGC
CAAAGTGTTGGTGGTGGGGGATATGCTTCGCATGATGGGGATGGGGGGGA
GGAGGATAATTATCAAAGTTACGATGAGTCGGATTTTGATTCGGACGCGT
CGTTGGAATCGGATGAGGATGATATCCCTCTTCCTCCTTCCATGCTTGCT
GCTGGATTCAGCGGTCCAAATAACAATGAATTCAGCTACACAAGTGGGGA
GAAGCCGCCGTTGGGATTGCCGACCGAGGCGTCGATTTTGACGTCAACGA
CGAACGAGCGGAGGCTGACTCATCGGAGGGACCATGGAGTTCAGAGTCGG
CTGGTGGATGGGAGTAAGGGCAGTGAAGTGTACTTCGTGGGGGTGATTGA
CATATTGCAGCAGTACAATGCCTTGAAGCGGGCGGAGACATTTTTCAAGA
GCTTCAAGTACGATAGCAGACAGATCTCAGCGGTGGACCCGAAGTGGTAC
GCGAAACGGTTTGTGGACTTCACAGCGAGCCACATCCAGTGAATGATGCT
TGGCATCCGGGTGGCCGTGGGGCGGCCTCAGCAGATGGATGATCTGACCT
TGATGGATTTCATGCAAGTTGACAAGTACCTCTTTCCCCCGAAAGGTTGT
AACAAGCCTCCTCATCGCACCCCCCCTCACCATCTCTCTCATGACTTCAA
ATTCAAGGACTATGCACCCAAGATATTCCATCGCATCCGGCAGTTGTTTG
GGATTGACTCGGCCTCGTATATGTTGTCTGTGAGTGGGAATTATAATTAC
CTTGAGTTCATGTCCAATTCCAAGAGTGGGCAATTCTTCTTCTACTCGCA
CGACGGTCGGTTCATGATCAAGACCCAGACATCGGAGGAGAACAAATTCT
TGCGGAAAATTCTCCCGCATTACTACCAGTACGTGTCGCTGAATCCCAAC
ACGTTGTTGACGCGGTTCTACGGCATGCATCGGGTAAAAATGCGGCATTT
GAAGCGAAAAGTCCACTTTGTCATCATGCATTCCGTGTTTGATACCAAGG
AAAAGATATTTCGCATTTACGATCTTAAGGGCTCGACGGTGGGGAGGTCT
TCGGGTCCGGACAAGGTGCGGAAGGAGGGAGTAGTGTACAAAGACCTGGA
CCTGGTGGACGATCAGGCGAAATTCCAGTTGGGCACGAAAAGGAAGCTGT
TTATGGAGCAGTTGGAAAAGGATGCGAGTTTTTTGGCGAGCCTGAATATC
ATGGACTATTCCCTGTTGATTGGCATTCATGACGAGGCGAGGCGGGACGA
GTTCGCGGAACGAGGCGTCTCCATGTCCAGCCCCATCACGGGCAGTGGCG
GCGACGGCAGCGGTGGCGAAGGAGGAGGAGGAGGAGATGTACTGGATGAT
CCAGGTGCCATGCTTGGTGTGTCTTCCCATCCCTACGTGGAGGGCTCCGA
GCCTCTGCACCACCACCCTTCAGCACCGCTCCCTCCCTCCCTCCTTCCCC
ATTCCCAACATAAGCCTTCGGGGGGACCAGTGCAGTCTTTCCTCCCTCGC
TCTCGTCGGGAGTATAGCTATGAATCTGAAGGTGCGCACAGCCAAAGTGT
TGGTGGTGGGGGATATGCTTCGCATGATGGGGATGGGGGGGAGGAGGATA
ATTATCAAAGTTACGATGAGTCGGATTTTGATTCGGACGCGTCGTTGGAA
TCGGATGAGGATGATATCCCTCTTCCTCCTTCCATGCTTGCTGCTGGATT
CAGCGGTCCAAATAACAATGAATTCAGCTACACAAGTGGGGAGAAGCCGC
CGTTGGGATTGCCGACCGAGGCGTCGATTTTGACGTCAACGACGAACGAG
CGGAGGCTGACTCATCGGAGGGACCATGGAGTTCAGAGTCGGCTGGTGGA
TGGGAGTAAGGGCAGTGAAGTGTACTTCGTGGGGGTGATTGACATATTGC
AGCAGTACAATGCCTTGAAGCGGGCGGAGACATTTTTCAAGAGCTTCAAG
TACGATAGCAGACAGATCTCAGCGGTGGACCCGAAGTGGTACGCGAAACG
GTTTGTGGACTTCACAGCGAGCCACATCCAGTGA

Synonyms

Publications