jgi.p|Nanoce1779_2|584670, mRNA_3129 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584670
Unique NamemRNA_3129
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length566
Alignment locationscaffold_7:725784..726509 -

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Properties
Property NameValue
TranscriptId584756
TrackFilteredModels2
ProteinId584670
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:725784..726509 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584670gene_3129Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584670mRNA_3129-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3129CDS_3129Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3129 ID=mRNA_3129|Name=jgi.p|Nanoce1779_2|584670|organism=Nannochloropsis oceanica|type=mRNA|length=566bp
GTCACCGTCGATCGCCTCCAGCCTCCTCCACCCTCCACTCAACATCATCC
ATCATTATGATAATCATCATCATCATCATCATCCCCCTTTCCCGTCCAGT
AGCACTCGGAAGCACGCAAGGAAGCATGGCCGGTCGCAAGAAGAACACGC
CCATGAAGCGACTGAAGCACGTTATAACATTGGGCTATAACTTCTGCCGG
CCCGTAGCGTATTATGGCATGATTCCCTTTGTGCTGTACGTAGGTATGAA
TGGAGACGCAGCGCCCAATTGGTCTGACTTGCCGCGTTACCTAATTGCTG
TCCTCTAATACCGCCGCGGGTGCCGCGCCGACTGGTGTACGTGTCAAGAA
TGAGTAATGATGCGATATGTGCATGTACAGAGACGAGAATGGAGGAAAGA
ATGAATAAAAGGGGAAGGGAAAATGTGAGCGTCACGTTGCACGAGATATT
GCCTGTATGTTCTCTCTTGTTCTTGTTCCATTGTAAGGTAGACCTGACCA
ATGACATTTCGAGGAGACATGAGGGGGAGTCATAAAATGCAATGGCAAAG
TGCGCGCATCTTTTAA
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protein sequence of jgi.p|Nanoce1779_2|584670

>mRNA_3129-protein ID=mRNA_3129-protein|Name=jgi.p|Nanoce1779_2|584670|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MIIIIIIIIPLSRPVALGSTQGSMAGRKKNTPMKRLKHVITLGYNFCRPV
AYYGMIPFVLYVGMNGDAAPNWSDLPRYLIAVL*
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mRNA from alignment at scaffold_7:725784..726509-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3129 ID=mRNA_3129|Name=jgi.p|Nanoce1779_2|584670|organism=Nannochloropsis oceanica|type=mRNA|length=726bp|location=Sequence derived from alignment at scaffold_7:725784..726509- (Nannochloropsis oceanica)
GTCACCGTCGATCGCCTCCAGCCTCCTCCACCCTCCACTCAACATCATCC
ATCATTATGATAATCATCATCATCATCATCATCCCCCTTTCCCGTCCAGT
AGCACTCGGAAGCACGCAAGGAAGCATGGCCGGTCGCAAGAAGAACACGC
CCATGAAGGTAGGTCCATGCAGAAGGGGTGTGGAGCAGATATGGCGGTGG
CGATGGTATCGTGCAGTTGGGGGTTTGTGAAGTGGAGAGGGGGAAAGGAC
GGAGGGAGGGTGTCCTCCGAGGATTCGCGCTGATAGCACACCTCGCACAC
ATCTCTCCCTCACTGCAGCGACTGAAGCACGTTATAACATTGGGCTATAA
CTTCTGCCGGCCCGTAGCGTATTATGGCATGATTCCCTTTGTGCTGTACG
TAGGTATGAATGGAGACGCAGCGCCCAATTGGTCTGACTTGCCGCGTTAC
CTAATTGCTGTCCTCTAATACCGCCGCGGGTGCCGCGCCGACTGGTGTAC
GTGTCAAGAATGAGTAATGATGCGATATGTGCATGTACAGAGACGAGAAT
GGAGGAAAGAATGAATAAAAGGGGAAGGGAAAATGTGAGCGTCACGTTGC
ACGAGATATTGCCTGTATGTTCTCTCTTGTTCTTGTTCCATTGTAAGGTA
GACCTGACCAATGACATTTCGAGGAGACATGAGGGGGAGTCATAAAATGC
AATGGCAAAGTGCGCGCATCTTTTAA
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Coding sequence (CDS) from alignment at scaffold_7:725784..726509-

>mRNA_3129 ID=mRNA_3129|Name=jgi.p|Nanoce1779_2|584670|organism=Nannochloropsis oceanica|type=CDS|length=504bp|location=Sequence derived from alignment at scaffold_7:725784..726509- (Nannochloropsis oceanica)
CGACTGAAGCACGTTATAACATTGGGCTATAACTTCTGCCGGCCCGTAGC
GTATTATGGCATGATTCCCTTTGTGCTGTACGTAGGTATGAATGGAGACG
CAGCGCCCAATTGGTCTGACTTGCCGCGTTACCTAATTGCTGTCCTCTAA
ATGATAATCATCATCATCATCATCATCCCCCTTTCCCGTCCAGTAGCACT
CGGAAGCACGCAAGGAAGCATGGCCGGTCGCAAGAAGAACACGCCCATGA
AGCGACTGAAGCACGTTATAACATTGGGCTATAACTTCTGCCGGCCCGTA
GCGTATTATGGCATGATTCCCTTTGTGCTGTACGTAGGTATGAATGGAGA
CGCAGCGCCCAATTGGTCTGACTTGCCGCGTTACCTAATTGCTGTCCTCT
AAATGATAATCATCATCATCATCATCATCCCCCTTTCCCGTCCAGTAGCA
CTCGGAAGCACGCAAGGAAGCATGGCCGGTCGCAAGAAGAACACGCCCAT
GAAG
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Synonyms
Publications