Properties
| Property Name | Value |
|---|
| TranscriptId | 584749 |
| Track | FilteredModels2 |
| ProteinId | 584663 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_7 | supercontig | scaffold_7:723397..725178 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3128 ID=mRNA_3128|Name=jgi.p|Nanoce1779_2|584663|organism=Nannochloropsis oceanica|type=mRNA|length=1423bp
AGGAAAGCCAGCCAATGAGAAGACCAGCAAATACGGCATGGTTGGCGGCC
CTAGGAAGCTTGCTCCTGCTCCCTTGCGCCATGGCCTTCCTGGCCGTGCC
CCTCCGCAGCCGGGGCCGGCAACATCCTGGCGGCGGGCAGGGGTCAATAG
GAGGGGGATGGATTGATGGTCCTGACGGAAACCCTTTGATAGAGCCACAA
GCGTGGCATGTGTGTGGAGTTTCAGAAGCCCTGTTGTCGAAACCCGACGC
TCTATTGCCCCCCCTTCTCCGGGAGAAAACAAAAGGGAATCACATTATGT
ATACCCATAACTCTACACCACGAGGAGGTTGATCGCGTCAATTTACTCCA
AATGACAATCAATTCACCGTCGCCCTCCCCCTACTTCCTCTCTTTTCCTC
CCTTTATACAGCTGTCCTGTCCTCTTCACCCTCCCCCTCCCGTCTCCATG
CGGTTGCCACCGTCGCCCCCGTCCAAGCCAACCCTAGCACAAGTAGCAGC
ACACCACAGGACCAACAGCAACAAGAACAGCAGCAGCAGCCCGCGGGTGA
TGGGTTTGGAGGCGCCCACCCTATCAGGCTGAGTATATCGGAAAGGGCAA
GAACGGTGACGTACGTGGCGACGGCTGCTACGCTGGGCACATCCAGTGAG
TCAGACACGACGCCTTTTGGAAGCTATGTCGATTATATCTTGGACGATAA
GGGCTGGCCCGTCCTCCTCCTCTCCGATCAATCCCTCCACACGCAAAACA
TTAAAGCCAACCCCCAAGTCAGTCTCTTCGTCCAAATGCCCAAAACCGGC
AAAGGGGACACGAGCACGTCCGCCGCGCTCTCCCGTGTCACGTTGATCGG
TAACATCGTCCCCGTAGAGGCGGAGGAGCTCCCGGCCATCCGCACGGCGT
ACAGCATCGTGCATTCCTACTCCGAGCGACTGGTGGAATCACCCAAGTTT
TCCTTCTACAAGCTACAGCCGGAGCGCGTGTACTTCGTGGGGGGCTTTGG
CGTTTTGAGCAAGTGGATCCCAGTGGCTGAGTACGAGACGGCCGTGCCTG
ACATCTTGGCCCATGAGATGTCGCGGATCGTAGCGAGGATGAACGGGGAG
CACGAGGCAGAGCTGCGGCTCATGTGTCGCCATTTTCTTGGCGCGCAGGA
GGTGGACCAGGTGACCGCCACCACAGTTGACAGGCTCGGGATTGACCTGA
GGGTAACGTCCGGGGAATTAACGGACGAGTACCGGGTCGGGTTTAGGGAA
AAAGTGACAAGCACGGAGGACGCTAAGAGCGAGCTGGTGAAGATGTTCCA
AGAGGCGTGGGAGAGGGAGCATGATTATGCCTGGATTGAGGAGTTACCGC
CTGTGATTAGATATGCAGAGGATATTTTGAGAAAGCGGGGTTAGAGGAAA
GAAGAAAGGGAGGGAGGGAGGGA back to topprotein sequence of jgi.p|Nanoce1779_2|584663 >mRNA_3128-protein ID=mRNA_3128-protein|Name=jgi.p|Nanoce1779_2|584663|organism=Nannochloropsis oceanica|type=polypeptide|length=203bp
MPKTGKGDTSTSAALSRVTLIGNIVPVEAEELPAIRTAYSIVHSYSERLV
ESPKFSFYKLQPERVYFVGGFGVLSKWIPVAEYETAVPDILAHEMSRIVA
RMNGEHEAELRLMCRHFLGAQEVDQVTATTVDRLGIDLRVTSGELTDEYR
VGFREKVTSTEDAKSELVKMFQEAWEREHDYAWIEELPPVIRYAEDILRK
RG* back to topmRNA from alignment at scaffold_7:723397..725178+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3128 ID=mRNA_3128|Name=jgi.p|Nanoce1779_2|584663|organism=Nannochloropsis oceanica|type=mRNA|length=1782bp|location=Sequence derived from alignment at scaffold_7:723397..725178+ (Nannochloropsis oceanica)
AGGAAAGCCAGCCAATGAGAAGACCAGCAAATACGGCATGGTTGGCGGCC
CTAGGAAGCTTGCTCCTGCTCCCTTGCGCCATGGCCTTCCTGGCCGTGCC
CCTCCGCAGCCGGGGCCGGCAACATCCTGGCGGTACGTATACTATTATGC
ATGGTTGGCGAGGAAGGTGTGAGGCAGGAGGGAAGAGATGGGGGAGGACA
TTGGCTGTGGCTGTTGTGACGAAGACAAGCAGGCTCCTCTTTCTTCTGGT
TCCCAAGCCCCGCTGCTACCATCATATCGTGCACAGGCGGGCAGGGGTCA
ATAGGAGGGGGATGGATTGATGGTCCTGACGGAAACCCTTTGATAGAGCC
ACAAGCGTGGCATGTGTGTGGAGTTTCAGAAGCCCTGTTGTCGAAACCCG
ACGCTCTATTGCCCCCCCTTCTCCGGGAGAAAACAAAAGGGAATCACATT
ATGTATACCCATAACTCTACACCACGAGGAGGTTGATCGCGTCAATTTAC
TCCAAATGACAATCAATTCACCGTCGCCCTCCCCCTACTTCCTCTCTTTT
CCTCCCTTTATACAGCTGTCCTGTCCTCTTCACCCTCCCCCTCCCGTCTC
CATGCGGTTGCCACCGTCGCCCCCGTCCAAGCCAACCCTAGCACAAGTAG
CAGCACACCACAGGACCAACAGCAACAAGAACAGCAGCAGCAGCCCGCGG
GTGATGGGTTTGGAGGCGCCCACCCTATCAGGCTGAGTATATCGGAAAGG
GCAAGAACGGTGACGTACGTGGCGACGGCTGCTACGCTGGGCACATCCAG
TGAGTCAGACACGACGCCTTTTGGAAGCTATGTCGATTATATCTTGGACG
ATAAGGTGAGGAAGTAGGAGGTTTGGGAAGGATAGAGGGAAGTATAGAGG
GAAGGATAGAGGGAAGGATAGAGGGGGATGGTAATTTGTATTCCTCTGTT
ATGGCCAACTCAAAATTGTCAGACATGGCTTCGTGCATCGAGTTGTCCTC
GCTTCCTCACCATCTCACCCTCCCACCATCGCTCCCTTCCTCCCTTTCTT
TTCTCGCTAGGGCTGGCCCGTCCTCCTCCTCTCCGATCAATCCCTCCACA
CGCAAAACATTAAAGCCAACCCCCAAGTCAGTCTCTTCGTCCAAATGCCC
AAAACCGGCAAAGGGGACACGAGCACGTCCGCCGCGCTCTCCCGTGTCAC
GTTGATCGGTAACATCGTCCCCGTAGAGGCGGAGGAGCTCCCGGCCATCC
GCACGGCGTACAGCATCGTGCATTCCTACTCCGAGCGACTGGTGGAATCA
CCCAAGTTTTCCTTCTACAAGCTACAGCCGGAGCGCGTGTACTTCGTGGG
GGGCTTTGGCGTTTTGAGCAAGTGGATCCCAGTGGCTGAGTACGAGACGG
CCGTGCCTGACATCTTGGCCCATGAGATGTCGCGGATCGTAGCGAGGATG
AACGGGGAGCACGAGGCAGAGCTGCGGCTCATGTGTCGCCATTTTCTTGG
CGCGCAGGAGGTGGACCAGGTGACCGCCACCACAGTTGACAGGCTCGGGA
TTGACCTGAGGGTAACGTCCGGGGAATTAACGGACGAGTACCGGGTCGGG
TTTAGGGAAAAAGTGACAAGCACGGAGGACGCTAAGAGCGAGCTGGTGAA
GATGTTCCAAGAGGCGTGGGAGAGGGAGCATGATTATGCCTGGATTGAGG
AGTTACCGCCTGTGATTAGATATGCAGAGGATATTTTGAGAAAGCGGGGT
TAGAGGAAAGAAGAAAGGGAGGGAGGGAGGGA back to topCoding sequence (CDS) from alignment at scaffold_7:723397..725178+ >mRNA_3128 ID=mRNA_3128|Name=jgi.p|Nanoce1779_2|584663|organism=Nannochloropsis oceanica|type=CDS|length=609bp|location=Sequence derived from alignment at scaffold_7:723397..725178+ (Nannochloropsis oceanica)
ATGCCCAAAACCGGCAAAGGGGACACGAGCACGTCCGCCGCGCTCTCCCG
TGTCACGTTGATCGGTAACATCGTCCCCGTAGAGGCGGAGGAGCTCCCGG
CCATCCGCACGGCGTACAGCATCGTGCATTCCTACTCCGAGCGACTGGTG
GAATCACCCAAGTTTTCCTTCTACAAGCTACAGCCGGAGCGCGTGTACTT
CGTGGGGGGCTTTGGCGTTTTGAGCAAGTGGATCCCAGTGGCTGAGTACG
AGACGGCCGTGCCTGACATCTTGGCCCATGAGATGTCGCGGATCGTAGCG
AGGATGAACGGGGAGCACGAGGCAGAGCTGCGGCTCATGTGTCGCCATTT
TCTTGGCGCGCAGGAGGTGGACCAGGTGACCGCCACCACAGTTGACAGGC
TCGGGATTGACCTGAGGGTAACGTCCGGGGAATTAACGGACGAGTACCGG
GTCGGGTTTAGGGAAAAAGTGACAAGCACGGAGGACGCTAAGAGCGAGCT
GGTGAAGATGTTCCAAGAGGCGTGGGAGAGGGAGCATGATTATGCCTGGA
TTGAGGAGTTACCGCCTGTGATTAGATATGCAGAGGATATTTTGAGAAAG
CGGGGTTAG back to top
|