jgi.p|Nanoce1779_2|564904, mRNA_3126 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|564904
Unique NamemRNA_3126
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1038
Alignment locationscaffold_7:719857..720894 +

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Properties
Property NameValue
TranscriptId564990
TrackFilteredModels2
ProteinId564904
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:719857..720894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564904gene_3126Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564904mRNA_3126-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3126CDS_3126Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3126 ID=mRNA_3126|Name=jgi.p|Nanoce1779_2|564904|organism=Nannochloropsis oceanica|type=mRNA|length=1038bp
ATGCCTGCCGAGCCTACTATCCTTGTCTACAATGTTGCTATCGGTACCTG
CGTGCGGGCCGGGCAAATGGGGAAAGCCATTGGCCTGCTAAACCAGCTCT
TTGAAAGCCAGAAAACGCATGTCGTCCCAAACCATCTCACCTACAACCTC
TTAGTCTTCGGCGCCGCACGCGCGGGCGACTGGACTCAAGCCCAAAGCTT
TCGCGATGAAATGCTGCAGCATCAACTCCGCCCGGACGCGCATACGTACC
AAGGCTTGCTCATGGCATGTGGCAAGGCCAAGGAAAAAAAAATGGTAGCA
GAGCTCCTTAGTCAGATAGACGGACCGAAGCTCGTCCCTATTTATACGAC
TGCCATTGCCGCCTCGGCCCGTTGCGGGGACTGGCAGGGTGCGCTAGCAT
TGCTCCGACAGATGAAGGAGGAAGATGGATTGGAACCAGGGGTAGGTGCG
TACCAAGCCGCTATGTTTGCTTGCTCGAAACCCGACCCAGCACGATGGAC
GGAGAGTCTGGATCTGTTGAGGGAGATGCGTAGTAAAGGGTTACCTGTAG
GACTGACGGCTTATAACACCGCTATTTTATGTGCGGGGATGGCGCATGAG
ACGGCGGTAGCGCAGCGGTTGTTGGATGAGATGAAGAAGGAGGGTGGGCG
GGAGGGGGGTGAGGAGGGAAAAGGGGGAAGGCTGGTGCCGAATAATGGGA
GCTATAGGGGTTTGATAAAAAGTTTGGCTAAAGCGGGAGCTTATGAAAAA
TGTCTGGGGGTGCTGGAGGAGATGGCGAAGGAGGGGTTGGAGCCTGATTT
GTTATTGTACACAGATGCCATGGAGGTGTTTGCGAGGAGTCACAACCCGG
GGGCGACGATGAGGATTTTGAACCAAATGAAGGGGGCGAAGCAACCGGAT
CTAAGGTTGTACCTAGCGCCATTAATTGATGCAGATGAGGCGGCAGAAAG
GCCGGTGGTGGAGATGTTCGTGAAGGAGGTGGAGAAGTTGGGAGGGTTGC
ATGTGGCGGAGCAGGGAGGAGAGGGAGGGGGGATGTGA
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protein sequence of jgi.p|Nanoce1779_2|564904

>mRNA_3126-protein ID=mRNA_3126-protein|Name=jgi.p|Nanoce1779_2|564904|organism=Nannochloropsis oceanica|type=polypeptide|length=346bp
MPAEPTILVYNVAIGTCVRAGQMGKAIGLLNQLFESQKTHVVPNHLTYNL
LVFGAARAGDWTQAQSFRDEMLQHQLRPDAHTYQGLLMACGKAKEKKMVA
ELLSQIDGPKLVPIYTTAIAASARCGDWQGALALLRQMKEEDGLEPGVGA
YQAAMFACSKPDPARWTESLDLLREMRSKGLPVGLTAYNTAILCAGMAHE
TAVAQRLLDEMKKEGGREGGEEGKGGRLVPNNGSYRGLIKSLAKAGAYEK
CLGVLEEMAKEGLEPDLLLYTDAMEVFARSHNPGATMRILNQMKGAKQPD
LRLYLAPLIDADEAAERPVVEMFVKEVEKLGGLHVAEQGGEGGGM*
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mRNA from alignment at scaffold_7:719857..720894+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3126 ID=mRNA_3126|Name=jgi.p|Nanoce1779_2|564904|organism=Nannochloropsis oceanica|type=mRNA|length=1038bp|location=Sequence derived from alignment at scaffold_7:719857..720894+ (Nannochloropsis oceanica)
ATGCCTGCCGAGCCTACTATCCTTGTCTACAATGTTGCTATCGGTACCTG
CGTGCGGGCCGGGCAAATGGGGAAAGCCATTGGCCTGCTAAACCAGCTCT
TTGAAAGCCAGAAAACGCATGTCGTCCCAAACCATCTCACCTACAACCTC
TTAGTCTTCGGCGCCGCACGCGCGGGCGACTGGACTCAAGCCCAAAGCTT
TCGCGATGAAATGCTGCAGCATCAACTCCGCCCGGACGCGCATACGTACC
AAGGCTTGCTCATGGCATGTGGCAAGGCCAAGGAAAAAAAAATGGTAGCA
GAGCTCCTTAGTCAGATAGACGGACCGAAGCTCGTCCCTATTTATACGAC
TGCCATTGCCGCCTCGGCCCGTTGCGGGGACTGGCAGGGTGCGCTAGCAT
TGCTCCGACAGATGAAGGAGGAAGATGGATTGGAACCAGGGGTAGGTGCG
TACCAAGCCGCTATGTTTGCTTGCTCGAAACCCGACCCAGCACGATGGAC
GGAGAGTCTGGATCTGTTGAGGGAGATGCGTAGTAAAGGGTTACCTGTAG
GACTGACGGCTTATAACACCGCTATTTTATGTGCGGGGATGGCGCATGAG
ACGGCGGTAGCGCAGCGGTTGTTGGATGAGATGAAGAAGGAGGGTGGGCG
GGAGGGGGGTGAGGAGGGAAAAGGGGGAAGGCTGGTGCCGAATAATGGGA
GCTATAGGGGTTTGATAAAAAGTTTGGCTAAAGCGGGAGCTTATGAAAAA
TGTCTGGGGGTGCTGGAGGAGATGGCGAAGGAGGGGTTGGAGCCTGATTT
GTTATTGTACACAGATGCCATGGAGGTGTTTGCGAGGAGTCACAACCCGG
GGGCGACGATGAGGATTTTGAACCAAATGAAGGGGGCGAAGCAACCGGAT
CTAAGGTTGTACCTAGCGCCATTAATTGATGCAGATGAGGCGGCAGAAAG
GCCGGTGGTGGAGATGTTCGTGAAGGAGGTGGAGAAGTTGGGAGGGTTGC
ATGTGGCGGAGCAGGGAGGAGAGGGAGGGGGGATGTGA
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Coding sequence (CDS) from alignment at scaffold_7:719857..720894+

>mRNA_3126 ID=mRNA_3126|Name=jgi.p|Nanoce1779_2|564904|organism=Nannochloropsis oceanica|type=CDS|length=1038bp|location=Sequence derived from alignment at scaffold_7:719857..720894+ (Nannochloropsis oceanica)
ATGCCTGCCGAGCCTACTATCCTTGTCTACAATGTTGCTATCGGTACCTG
CGTGCGGGCCGGGCAAATGGGGAAAGCCATTGGCCTGCTAAACCAGCTCT
TTGAAAGCCAGAAAACGCATGTCGTCCCAAACCATCTCACCTACAACCTC
TTAGTCTTCGGCGCCGCACGCGCGGGCGACTGGACTCAAGCCCAAAGCTT
TCGCGATGAAATGCTGCAGCATCAACTCCGCCCGGACGCGCATACGTACC
AAGGCTTGCTCATGGCATGTGGCAAGGCCAAGGAAAAAAAAATGGTAGCA
GAGCTCCTTAGTCAGATAGACGGACCGAAGCTCGTCCCTATTTATACGAC
TGCCATTGCCGCCTCGGCCCGTTGCGGGGACTGGCAGGGTGCGCTAGCAT
TGCTCCGACAGATGAAGGAGGAAGATGGATTGGAACCAGGGGTAGGTGCG
TACCAAGCCGCTATGTTTGCTTGCTCGAAACCCGACCCAGCACGATGGAC
GGAGAGTCTGGATCTGTTGAGGGAGATGCGTAGTAAAGGGTTACCTGTAG
GACTGACGGCTTATAACACCGCTATTTTATGTGCGGGGATGGCGCATGAG
ACGGCGGTAGCGCAGCGGTTGTTGGATGAGATGAAGAAGGAGGGTGGGCG
GGAGGGGGGTGAGGAGGGAAAAGGGGGAAGGCTGGTGCCGAATAATGGGA
GCTATAGGGGTTTGATAAAAAGTTTGGCTAAAGCGGGAGCTTATGAAAAA
TGTCTGGGGGTGCTGGAGGAGATGGCGAAGGAGGGGTTGGAGCCTGATTT
GTTATTGTACACAGATGCCATGGAGGTGTTTGCGAGGAGTCACAACCCGG
GGGCGACGATGAGGATTTTGAACCAAATGAAGGGGGCGAAGCAACCGGAT
CTAAGGTTGTACCTAGCGCCATTAATTGATGCAGATGAGGCGGCAGAAAG
GCCGGTGGTGGAGATGTTCGTGAAGGAGGTGGAGAAGTTGGGAGGGTTGC
ATGTGGCGGAGCAGGGAGGAGAGGGAGGGGGGATGTGA
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Synonyms
Publications