jgi.p|Nanoce1779_2|584653, mRNA_3125 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584653
Unique NamemRNA_3125
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1331
Alignment locationscaffold_7:716793..718123 -

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Properties
Property NameValue
TranscriptId584739
TrackFilteredModels2
ProteinId584653
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:716793..718123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584653gene_3125Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584653mRNA_3125-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3125CDS_3125Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3125 ID=mRNA_3125|Name=jgi.p|Nanoce1779_2|584653|organism=Nannochloropsis oceanica|type=mRNA|length=1331bp
GGAGGTGGAGACACTCGCACAGTTCGGCTCCATCTTTTTGTTGTTTGGTC
ATGGCATGATTTACTGCCAGCAATTTCATATCACGCAATTAGGAGGAACT
CTCTCGGATACTTTCGCGGCAGGGGTGCTTATCCTATCGATAATCTTCTT
TCTAATCATTTTGGCCTACACATGCTTTGTGGGCAGCGCTCAGTTCTATC
AAGCCACGCTAGTCGCGTCTGCCGTGTCCTTGTCCTCGACCACAGCAACC
GCGCATGTGCTGGTTGCCAATCGGCTGCGAGAGACGGGTTATGGCCAAAC
GCTAATTGAGCTCATGTCCGTCCAAGATCTGTTGATGGCCCCCCTTCTTT
CCATTCCTACCGCGGTGAAAGAGCTTATGTCCGAGCACGGCTTGCTGCAT
ACGATTCTGATTCTTGCTCGTTACGCCGCTGCGATCACGGGTGCGGCGAT
GTTGAGCAAGAAGTATATGCCTCGGATTATAAATTTGAGGAATCGCGCGG
AGAATTCACTAAGTCTCGATTTGTTCATCTTGGGCTTGGTGTCGTATTGC
CTTCTAATGTCTTTGCTGACGGAATGGATGGGGTTGAGCCACGAAGCGGG
TGCATTGCTTGCTGGGCTTGTCTTGGCGGATGTACCTCAGATTGGGAAGG
CGGTTGTGGTGATGGAGCCTTTGACTTGCTTGTTTGGCGGAATGTACCTC
GGGTCATTGGGCATGATCCTCAGTCCTCTCTTCCTGGTTCATCACATGGG
CACCATTGTCCTGTGTGTAACGGCGGTGTTGCTGATTAAGATTGCTACTG
TTTCTATCGGCATGCGCGTGCTGGACTACTCGCTGAAAGCCTCTCTGCTT
GGAGCGTTGTCCATGGCACACATCTCCGAACTTTCCCTCTTCCTCGTCTC
CCGCGCCCAAGAATACAAGCTCATCTCCCGGCATGTCTACCTGATGGTGG
TGGCTACCACAATCATCCTCCTCATCCTTACGCCCTTCGCTTCTCATGCC
TTCAAAGGAGTCGATCGCAACGAGTATAAGAAAGGCATTCATAAATCAAT
TTTTGCCAAAGGTCCTGTCGCCGCGCCATCGTCAGCATCGTAAGGGGGGA
GTCCTCAGCTGTCAGGCATCACTCATGGGAATGGTACGGGAGTATTACCT
TGTATTGGAGGGAGTCGGGCAAGTCATTGATGGCCTGCTGGAGTAGGTGG
GTTAGGGGGGAGAAGAGGAGGCACGGAGAACGATGGAATGGGGCAAGAAG
TCATGTACGGGCGACCTTGAGAGTGATGAAAGCTGTCCAACGAATGTAAC
TGACGGTGTCTAATTTATCTGTGCCACTCCT
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protein sequence of jgi.p|Nanoce1779_2|584653

>mRNA_3125-protein ID=mRNA_3125-protein|Name=jgi.p|Nanoce1779_2|584653|organism=Nannochloropsis oceanica|type=polypeptide|length=346bp
MIYCQQFHITQLGGTLSDTFAAGVLILSIIFFLIILAYTCFVGSAQFYQA
TLVASAVSLSSTTATAHVLVANRLRETGYGQTLIELMSVQDLLMAPLLSI
PTAVKELMSEHGLLHTILILARYAAAITGAAMLSKKYMPRIINLRNRAEN
SLSLDLFILGLVSYCLLMSLLTEWMGLSHEAGALLAGLVLADVPQIGKAV
VVMEPLTCLFGGMYLGSLGMILSPLFLVHHMGTIVLCVTAVLLIKIATVS
IGMRVLDYSLKASLLGALSMAHISELSLFLVSRAQEYKLISRHVYLMVVA
TTIILLILTPFASHAFKGVDRNEYKKGIHKSIFAKGPVAAPSSAS*
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mRNA from alignment at scaffold_7:716793..718123-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3125 ID=mRNA_3125|Name=jgi.p|Nanoce1779_2|584653|organism=Nannochloropsis oceanica|type=mRNA|length=1331bp|location=Sequence derived from alignment at scaffold_7:716793..718123- (Nannochloropsis oceanica)
GGAGGTGGAGACACTCGCACAGTTCGGCTCCATCTTTTTGTTGTTTGGTC
ATGGCATGATTTACTGCCAGCAATTTCATATCACGCAATTAGGAGGAACT
CTCTCGGATACTTTCGCGGCAGGGGTGCTTATCCTATCGATAATCTTCTT
TCTAATCATTTTGGCCTACACATGCTTTGTGGGCAGCGCTCAGTTCTATC
AAGCCACGCTAGTCGCGTCTGCCGTGTCCTTGTCCTCGACCACAGCAACC
GCGCATGTGCTGGTTGCCAATCGGCTGCGAGAGACGGGTTATGGCCAAAC
GCTAATTGAGCTCATGTCCGTCCAAGATCTGTTGATGGCCCCCCTTCTTT
CCATTCCTACCGCGGTGAAAGAGCTTATGTCCGAGCACGGCTTGCTGCAT
ACGATTCTGATTCTTGCTCGTTACGCCGCTGCGATCACGGGTGCGGCGAT
GTTGAGCAAGAAGTATATGCCTCGGATTATAAATTTGAGGAATCGCGCGG
AGAATTCACTAAGTCTCGATTTGTTCATCTTGGGCTTGGTGTCGTATTGC
CTTCTAATGTCTTTGCTGACGGAATGGATGGGGTTGAGCCACGAAGCGGG
TGCATTGCTTGCTGGGCTTGTCTTGGCGGATGTACCTCAGATTGGGAAGG
CGGTTGTGGTGATGGAGCCTTTGACTTGCTTGTTTGGCGGAATGTACCTC
GGGTCATTGGGCATGATCCTCAGTCCTCTCTTCCTGGTTCATCACATGGG
CACCATTGTCCTGTGTGTAACGGCGGTGTTGCTGATTAAGATTGCTACTG
TTTCTATCGGCATGCGCGTGCTGGACTACTCGCTGAAAGCCTCTCTGCTT
GGAGCGTTGTCCATGGCACACATCTCCGAACTTTCCCTCTTCCTCGTCTC
CCGCGCCCAAGAATACAAGCTCATCTCCCGGCATGTCTACCTGATGGTGG
TGGCTACCACAATCATCCTCCTCATCCTTACGCCCTTCGCTTCTCATGCC
TTCAAAGGAGTCGATCGCAACGAGTATAAGAAAGGCATTCATAAATCAAT
TTTTGCCAAAGGTCCTGTCGCCGCGCCATCGTCAGCATCGTAAGGGGGGA
GTCCTCAGCTGTCAGGCATCACTCATGGGAATGGTACGGGAGTATTACCT
TGTATTGGAGGGAGTCGGGCAAGTCATTGATGGCCTGCTGGAGTAGGTGG
GTTAGGGGGGAGAAGAGGAGGCACGGAGAACGATGGAATGGGGCAAGAAG
TCATGTACGGGCGACCTTGAGAGTGATGAAAGCTGTCCAACGAATGTAAC
TGACGGTGTCTAATTTATCTGTGCCACTCCT
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Coding sequence (CDS) from alignment at scaffold_7:716793..718123-

>mRNA_3125 ID=mRNA_3125|Name=jgi.p|Nanoce1779_2|584653|organism=Nannochloropsis oceanica|type=CDS|length=1038bp|location=Sequence derived from alignment at scaffold_7:716793..718123- (Nannochloropsis oceanica)
ATGATTTACTGCCAGCAATTTCATATCACGCAATTAGGAGGAACTCTCTC
GGATACTTTCGCGGCAGGGGTGCTTATCCTATCGATAATCTTCTTTCTAA
TCATTTTGGCCTACACATGCTTTGTGGGCAGCGCTCAGTTCTATCAAGCC
ACGCTAGTCGCGTCTGCCGTGTCCTTGTCCTCGACCACAGCAACCGCGCA
TGTGCTGGTTGCCAATCGGCTGCGAGAGACGGGTTATGGCCAAACGCTAA
TTGAGCTCATGTCCGTCCAAGATCTGTTGATGGCCCCCCTTCTTTCCATT
CCTACCGCGGTGAAAGAGCTTATGTCCGAGCACGGCTTGCTGCATACGAT
TCTGATTCTTGCTCGTTACGCCGCTGCGATCACGGGTGCGGCGATGTTGA
GCAAGAAGTATATGCCTCGGATTATAAATTTGAGGAATCGCGCGGAGAAT
TCACTAAGTCTCGATTTGTTCATCTTGGGCTTGGTGTCGTATTGCCTTCT
AATGTCTTTGCTGACGGAATGGATGGGGTTGAGCCACGAAGCGGGTGCAT
TGCTTGCTGGGCTTGTCTTGGCGGATGTACCTCAGATTGGGAAGGCGGTT
GTGGTGATGGAGCCTTTGACTTGCTTGTTTGGCGGAATGTACCTCGGGTC
ATTGGGCATGATCCTCAGTCCTCTCTTCCTGGTTCATCACATGGGCACCA
TTGTCCTGTGTGTAACGGCGGTGTTGCTGATTAAGATTGCTACTGTTTCT
ATCGGCATGCGCGTGCTGGACTACTCGCTGAAAGCCTCTCTGCTTGGAGC
GTTGTCCATGGCACACATCTCCGAACTTTCCCTCTTCCTCGTCTCCCGCG
CCCAAGAATACAAGCTCATCTCCCGGCATGTCTACCTGATGGTGGTGGCT
ACCACAATCATCCTCCTCATCCTTACGCCCTTCGCTTCTCATGCCTTCAA
AGGAGTCGATCGCAACGAGTATAAGAAAGGCATTCATAAATCAATTTTTG
CCAAAGGTCCTGTCGCCGCGCCATCGTCAGCATCGTAA
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Synonyms
Publications