jgi.p|Nanoce1779_2|638254, mRNA_3124 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|638254
Unique NamemRNA_3124
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length168
Alignment locationscaffold_7:716685..716999 -

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Properties
Property NameValue
TranscriptId638340
TrackFilteredModels2
ProteinId638254
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:716685..716999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|638254gene_3124Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|638254mRNA_3124-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3124CDS_3124Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3124 ID=mRNA_3124|Name=jgi.p|Nanoce1779_2|638254|organism=Nannochloropsis oceanica|type=mRNA|length=168bp
ATGGGAATGGTACGGGAGTATTACCTTGTATTGGAGGGAGTCGGGCAAGT
CATTGATGGCCTGCTGGAGGGTTTGAGAGGGAAGGCGGAAAAAGAGGTTG
AGGAGGAGGAGGGGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAAGAG
GAGGAGGCCTGGGCCTAA
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protein sequence of jgi.p|Nanoce1779_2|638254

>mRNA_3124-protein ID=mRNA_3124-protein|Name=jgi.p|Nanoce1779_2|638254|organism=Nannochloropsis oceanica|type=polypeptide|length=56bp
MGMVREYYLVLEGVGQVIDGLLEGLRGKAEKEVEEEEGEEEEEEEEEEEE
EEAWA*
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mRNA from alignment at scaffold_7:716685..716999-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3124 ID=mRNA_3124|Name=jgi.p|Nanoce1779_2|638254|organism=Nannochloropsis oceanica|type=mRNA|length=315bp|location=Sequence derived from alignment at scaffold_7:716685..716999- (Nannochloropsis oceanica)
ATGGGAATGGTACGGGAGTATTACCTTGTATTGGAGGGAGTCGGGCAAGT
CATTGATGGCCTGCTGGAGTAGGTGGGTTAGGGGGGAGAAGAGGAGGCAC
GGAGAACGATGGAATGGGGCAAGAAGTCATGTACGGGCGACCTTGAGAGT
GATGAAAGCTGTCCAACGAATGTAACTGACGGTGTCTAATTTATCTGTGC
CACTCCTATCGAAAGGGGTTTGAGAGGGAAGGCGGAAAAAGAGGTTGAGG
AGGAGGAGGGGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAAGAGGAG
GAGGCCTGGGCCTAA
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Coding sequence (CDS) from alignment at scaffold_7:716685..716999-

>mRNA_3124 ID=mRNA_3124|Name=jgi.p|Nanoce1779_2|638254|organism=Nannochloropsis oceanica|type=CDS|length=336bp|location=Sequence derived from alignment at scaffold_7:716685..716999- (Nannochloropsis oceanica)
GGGTTTGAGAGGGAAGGCGGAAAAAGAGGTTGAGGAGGAGGAGGGGGAGG
AGGAAGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGCCTGGGCCTAA
ATGGGAATGGTACGGGAGTATTACCTTGTATTGGAGGGAGTCGGGCAAGT
CATTGATGGCCTGCTGGAGGGTTTGAGAGGGAAGGCGGAAAAAGAGGTTG
AGGAGGAGGAGGGGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAAGAG
GAGGAGGCCTGGGCCTAAATGGGAATGGTACGGGAGTATTACCTTGTATT
GGAGGGAGTCGGGCAAGTCATTGATGGCCTGCTGGA
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Synonyms
Publications