jgi.p|Nanoce1779_2|669912, mRNA_3122 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|669912
Unique Name	mRNA_3122
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2653
Alignment location	scaffold_7:710281..712933 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	669998
Track	FilteredModels2
ProteinId	669912

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:710281..712933 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669912	gene_3122	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669912	mRNA_3122-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3122	CDS_3122	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:710281..712933+
coding sequence from alignment at scaffold_7:710281..712933+

mRNA sequence

>mRNA_3122 ID=mRNA_3122|Name=jgi.p|Nanoce1779_2|669912|organism=Nannochloropsis oceanica|type=mRNA|length=2653bp
AACAGGGCACGCGTAAAACGCGTCCAAGCCCGCCGCCTCGCTAGCCCGTC
GTCCACCCCACAACTCTCTTCAAGGAACAACTTACCTTCAGGCAGGAGCA
AGGAACAGGCTACAGCAATGAGGAGCGATCACTCAAGAAGACCACTCAGC
AGGGGGACAGGCTTGCCATCGCTTCTGGTGCTGCTCGTGTTGCTCGGCGC
CAGCATGGCTTTTCTCCTCCCGTCTTCCCACCTGTCCGCCGTGACCCTCT
CCACTGCAACATGGCGTGTGGCCCCCCTCCAGGCCGTTCCTCCGCCCGCG
GTCGACTACACCGCTGCGACCACGGTCACCGTCCAGGTGCAGCAGCATCG
AATGCAAGAATTGGAGGCCAAGGTTATGGCTGTCTCGGACACGCAGGTGC
GCGGCGCGGCCACTGATGTGGAGCCTCTACTGGCGGCGGTCGTTGAGGAG
AAGCCGCTTGATGCTATCGTGAAGACGTCTAGCGGTGCCCTCAAAGGATT
CGAAGGCGTGGCCCTGTTGGGTGCTTTGCCCTTGGCCTTCTTCTCGGCGC
GTACGCTGGAGAGGAAGCAAAAGGAATTGGAGGCTGTGGCTGCCAAGGAG
CTGGAGGACAACGCAGCGCGCATTGACCGAGAAGCGGAACAAGCCCGCGC
CAAGGCCGTGGAAGACGCTCAGAAGGCGGCAAAGAAGGAACTCCTCGATG
TTAAAATTCAGCGGGCCCGCGATGAAGAGAATCGTCTTCGCAAGAACCAG
GAAGAGGAGATCGAGCGTGAGAAGGCCAAACAAGATGCCATCGCCGCCCA
AAAGGTTGCCGAGCAAAAAGAACTACAAATCAAGCGTGAAGGGGAACAAG
CTGCGGCGGCCAGCCTGCAGAGAGAACAGCGTGCGGCTGAAGAGCTTGCT
AAGCTTTCCATCGCCCCAGAGCAAAATGTGGAAGCAGCAGCAGCGGCAGC
AGCCAAGAAGGAAGCCGAGATGAAAGCCGCGGCTGAAGCGAAGGCGGCGG
CTGAAGCGAAGGCGGCGGCCGAAGCGAAGGCCAAGGCGGATGCAGCAGCA
GCAGCAGCGGCAGCAAAGAAGGAGGCCGAGTTGAAAGCCGCGGCTGAAGC
AAAAGCGGCGGCCGAAGCGAAGGCCAAGGCGGATGCAGAAGCAGCAGCAG
CGGCAGCAGCCAAGAAGGAAGCCGAGATGATAGCCGCGGCTGAAGCAAAA
GCGGCGGCTGAAGCGAAGGCCAAGGCGGATGCAGAGGCAGCAGCAGCGGC
AGCAGCCAAGAAGGAAGCCGAGATGAAAGCCGCGGCTGAAGCGAAGGCCA
AGGCGGATGCAGAGGCATCAGCAGCGGCAGCAGCCAAGAAGGAAGCCGAG
ATGAAAGCCGCGGCTGAAGCGAAGGCCAAGGCGGATGCAGAGGCAGCAGC
AGCGGCAGCAGCCAAGAAGGAAGCCGAGATGAAAGCCGCGGCTGAAGCGA
AGGCCAAGGCGGATGCAGAGGCAGCAGCAGCGGCAGCAGCCAAGAAGGAA
GCCGAGATGAAAGCCGCGGCTGAAGCTAAGGCCAAATCAGATGCGGAAGA
CATACGCAAGCAAGAAAAAGCACAGGCATTCAAAACAAAGCAAGCAGAGG
AGGCTAGGGCGGCTGCTGAGAAGCGAGCTGATGCTGTCAAGGCCAAGCGT
GAGAAGGAGCAGGCGGAAGAGCGACAGCGTTTAATCAAGGTGAAGGCAGC
AAAGGAGGGCGCGGCAGCCAAACATGCTGAGAAGAAGCAATTAGAAGTGC
AAGCAAAGGCGGGTGCAAAGACAAAGGCCCCTGCTCCTATTACCTCTGAT
GTTCCTAAGAATACCACTCCTGCTTCTGTTGCTGCTCCTGAAGCTGTTCC
GGCACCAAACAAGCCCGTCGAGTTAAGCGCCGCAGAGCAGGCGGCTCAAC
GTGCACGACGAGAGGAGGAGATTCGGGCCCGGGCACGAGAGACGCAAAAA
GAGTTGTCGAAGCGGATGGTGGCCGATTTGACCGAAAAATTGTCGATTCC
CAAGTTGAAGGATTACTTGAAGCAGAATAAGGTGAAGGGCCCGAAGAGTA
GTGCGAAAAAGGCAGACTTTGTGAGTGCTGCCTTGACTGTAGCGGAGACA
AAAGGATGGGAAGCTTCAGTGATGGAGTTGCAGAGTTTGAGCAGCGTGCA
GGCCAAGGGGTTTGGGGGTGGCGGGGCGTCGAAGGGAGATGCGAAGAAAA
AGAAGTAAAAGAGAAGTGGAGAAGTAGTTGAAATTAGCTAGTCGGGAAGA
AAGGGGGAAATGATTTGAATCGACGTATGAAGTGTACGTTTATCCATTTT
AAGAAAGAGATGGAAGGTGTGGAAGTGTGTAAGTGATTTGAGTGTGAGAG
TCAAGTCTAAATTTCTGGTAGTGGAAGCGAAAGCAAACTGTTCCCCCTTT
TTAAAACCCGCAGCGTAAGACTAGGAACACTCTCACCTCTTCTCTGTTTT
CTGTTCTTCTGCTGTATGTGAGGAGAGAGTCCGGCTTTTCTGCCAGACAA
TCGCGACGATTGCAAAGAAAGCAGCGACACGTGTCTGCAGCGCACGGACG
GAAACCCCCAAAATAATCATTTGAAGCGATAGATGAAGATTACAGAAAAT
AGAAAACACAGTCGATCGTAAAAAAAGAAAGGAAAAGAATCGCGTTCTTT
CTT

protein sequence of jgi.p|Nanoce1779_2|669912

>mRNA_3122-protein ID=mRNA_3122-protein|Name=jgi.p|Nanoce1779_2|669912|organism=Nannochloropsis oceanica|type=polypeptide|length=697bp
MRSDHSRRPLSRGTGLPSLLVLLVLLGASMAFLLPSSHLSAVTLSTATWR
VAPLQAVPPPAVDYTAATTVTVQVQQHRMQELEAKVMAVSDTQVRGAATD
VEPLLAAVVEEKPLDAIVKTSSGALKGFEGVALLGALPLAFFSARTLERK
QKELEAVAAKELEDNAARIDREAEQARAKAVEDAQKAAKKELLDVKIQRA
RDEENRLRKNQEEEIEREKAKQDAIAAQKVAEQKELQIKREGEQAAAASL
QREQRAAEELAKLSIAPEQNVEAAAAAAAKKEAEMKAAAEAKAAAEAKAA
AEAKAKADAAAAAAAAKKEAELKAAAEAKAAAEAKAKADAEAAAAAAAKK
EAEMIAAAEAKAAAEAKAKADAEAAAAAAAKKEAEMKAAAEAKAKADAEA
SAAAAAKKEAEMKAAAEAKAKADAEAAAAAAAKKEAEMKAAAEAKAKADA
EAAAAAAAKKEAEMKAAAEAKAKSDAEDIRKQEKAQAFKTKQAEEARAAA
EKRADAVKAKREKEQAEERQRLIKVKAAKEGAAAKHAEKKQLEVQAKAGA
KTKAPAPITSDVPKNTTPASVAAPEAVPAPNKPVELSAAEQAAQRARREE
EIRARARETQKELSKRMVADLTEKLSIPKLKDYLKQNKVKGPKSSAKKAD
FVSAALTVAETKGWEASVMELQSLSSVQAKGFGGGGASKGDAKKKK*

mRNA from alignment at scaffold_7:710281..712933+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3122 ID=mRNA_3122|Name=jgi.p|Nanoce1779_2|669912|organism=Nannochloropsis oceanica|type=mRNA|length=2653bp|location=Sequence derived from alignment at scaffold_7:710281..712933+ (Nannochloropsis oceanica)
AACAGGGCACGCGTAAAACGCGTCCAAGCCCGCCGCCTCGCTAGCCCGTC
GTCCACCCCACAACTCTCTTCAAGGAACAACTTACCTTCAGGCAGGAGCA
AGGAACAGGCTACAGCAATGAGGAGCGATCACTCAAGAAGACCACTCAGC
AGGGGGACAGGCTTGCCATCGCTTCTGGTGCTGCTCGTGTTGCTCGGCGC
CAGCATGGCTTTTCTCCTCCCGTCTTCCCACCTGTCCGCCGTGACCCTCT
CCACTGCAACATGGCGTGTGGCCCCCCTCCAGGCCGTTCCTCCGCCCGCG
GTCGACTACACCGCTGCGACCACGGTCACCGTCCAGGTGCAGCAGCATCG
AATGCAAGAATTGGAGGCCAAGGTTATGGCTGTCTCGGACACGCAGGTGC
GCGGCGCGGCCACTGATGTGGAGCCTCTACTGGCGGCGGTCGTTGAGGAG
AAGCCGCTTGATGCTATCGTGAAGACGTCTAGCGGTGCCCTCAAAGGATT
CGAAGGCGTGGCCCTGTTGGGTGCTTTGCCCTTGGCCTTCTTCTCGGCGC
GTACGCTGGAGAGGAAGCAAAAGGAATTGGAGGCTGTGGCTGCCAAGGAG
CTGGAGGACAACGCAGCGCGCATTGACCGAGAAGCGGAACAAGCCCGCGC
CAAGGCCGTGGAAGACGCTCAGAAGGCGGCAAAGAAGGAACTCCTCGATG
TTAAAATTCAGCGGGCCCGCGATGAAGAGAATCGTCTTCGCAAGAACCAG
GAAGAGGAGATCGAGCGTGAGAAGGCCAAACAAGATGCCATCGCCGCCCA
AAAGGTTGCCGAGCAAAAAGAACTACAAATCAAGCGTGAAGGGGAACAAG
CTGCGGCGGCCAGCCTGCAGAGAGAACAGCGTGCGGCTGAAGAGCTTGCT
AAGCTTTCCATCGCCCCAGAGCAAAATGTGGAAGCAGCAGCAGCGGCAGC
AGCCAAGAAGGAAGCCGAGATGAAAGCCGCGGCTGAAGCGAAGGCGGCGG
CTGAAGCGAAGGCGGCGGCCGAAGCGAAGGCCAAGGCGGATGCAGCAGCA
GCAGCAGCGGCAGCAAAGAAGGAGGCCGAGTTGAAAGCCGCGGCTGAAGC
AAAAGCGGCGGCCGAAGCGAAGGCCAAGGCGGATGCAGAAGCAGCAGCAG
CGGCAGCAGCCAAGAAGGAAGCCGAGATGATAGCCGCGGCTGAAGCAAAA
GCGGCGGCTGAAGCGAAGGCCAAGGCGGATGCAGAGGCAGCAGCAGCGGC
AGCAGCCAAGAAGGAAGCCGAGATGAAAGCCGCGGCTGAAGCGAAGGCCA
AGGCGGATGCAGAGGCATCAGCAGCGGCAGCAGCCAAGAAGGAAGCCGAG
ATGAAAGCCGCGGCTGAAGCGAAGGCCAAGGCGGATGCAGAGGCAGCAGC
AGCGGCAGCAGCCAAGAAGGAAGCCGAGATGAAAGCCGCGGCTGAAGCGA
AGGCCAAGGCGGATGCAGAGGCAGCAGCAGCGGCAGCAGCCAAGAAGGAA
GCCGAGATGAAAGCCGCGGCTGAAGCTAAGGCCAAATCAGATGCGGAAGA
CATACGCAAGCAAGAAAAAGCACAGGCATTCAAAACAAAGCAAGCAGAGG
AGGCTAGGGCGGCTGCTGAGAAGCGAGCTGATGCTGTCAAGGCCAAGCGT
GAGAAGGAGCAGGCGGAAGAGCGACAGCGTTTAATCAAGGTGAAGGCAGC
AAAGGAGGGCGCGGCAGCCAAACATGCTGAGAAGAAGCAATTAGAAGTGC
AAGCAAAGGCGGGTGCAAAGACAAAGGCCCCTGCTCCTATTACCTCTGAT
GTTCCTAAGAATACCACTCCTGCTTCTGTTGCTGCTCCTGAAGCTGTTCC
GGCACCAAACAAGCCCGTCGAGTTAAGCGCCGCAGAGCAGGCGGCTCAAC
GTGCACGACGAGAGGAGGAGATTCGGGCCCGGGCACGAGAGACGCAAAAA
GAGTTGTCGAAGCGGATGGTGGCCGATTTGACCGAAAAATTGTCGATTCC
CAAGTTGAAGGATTACTTGAAGCAGAATAAGGTGAAGGGCCCGAAGAGTA
GTGCGAAAAAGGCAGACTTTGTGAGTGCTGCCTTGACTGTAGCGGAGACA
AAAGGATGGGAAGCTTCAGTGATGGAGTTGCAGAGTTTGAGCAGCGTGCA
GGCCAAGGGGTTTGGGGGTGGCGGGGCGTCGAAGGGAGATGCGAAGAAAA
AGAAGTAAAAGAGAAGTGGAGAAGTAGTTGAAATTAGCTAGTCGGGAAGA
AAGGGGGAAATGATTTGAATCGACGTATGAAGTGTACGTTTATCCATTTT
AAGAAAGAGATGGAAGGTGTGGAAGTGTGTAAGTGATTTGAGTGTGAGAG
TCAAGTCTAAATTTCTGGTAGTGGAAGCGAAAGCAAACTGTTCCCCCTTT
TTAAAACCCGCAGCGTAAGACTAGGAACACTCTCACCTCTTCTCTGTTTT
CTGTTCTTCTGCTGTATGTGAGGAGAGAGTCCGGCTTTTCTGCCAGACAA
TCGCGACGATTGCAAAGAAAGCAGCGACACGTGTCTGCAGCGCACGGACG
GAAACCCCCAAAATAATCATTTGAAGCGATAGATGAAGATTACAGAAAAT
AGAAAACACAGTCGATCGTAAAAAAAGAAAGGAAAAGAATCGCGTTCTTT
CTT

Coding sequence (CDS) from alignment at scaffold_7:710281..712933+

>mRNA_3122 ID=mRNA_3122|Name=jgi.p|Nanoce1779_2|669912|organism=Nannochloropsis oceanica|type=CDS|length=2091bp|location=Sequence derived from alignment at scaffold_7:710281..712933+ (Nannochloropsis oceanica)
ATGAGGAGCGATCACTCAAGAAGACCACTCAGCAGGGGGACAGGCTTGCC
ATCGCTTCTGGTGCTGCTCGTGTTGCTCGGCGCCAGCATGGCTTTTCTCC
TCCCGTCTTCCCACCTGTCCGCCGTGACCCTCTCCACTGCAACATGGCGT
GTGGCCCCCCTCCAGGCCGTTCCTCCGCCCGCGGTCGACTACACCGCTGC
GACCACGGTCACCGTCCAGGTGCAGCAGCATCGAATGCAAGAATTGGAGG
CCAAGGTTATGGCTGTCTCGGACACGCAGGTGCGCGGCGCGGCCACTGAT
GTGGAGCCTCTACTGGCGGCGGTCGTTGAGGAGAAGCCGCTTGATGCTAT
CGTGAAGACGTCTAGCGGTGCCCTCAAAGGATTCGAAGGCGTGGCCCTGT
TGGGTGCTTTGCCCTTGGCCTTCTTCTCGGCGCGTACGCTGGAGAGGAAG
CAAAAGGAATTGGAGGCTGTGGCTGCCAAGGAGCTGGAGGACAACGCAGC
GCGCATTGACCGAGAAGCGGAACAAGCCCGCGCCAAGGCCGTGGAAGACG
CTCAGAAGGCGGCAAAGAAGGAACTCCTCGATGTTAAAATTCAGCGGGCC
CGCGATGAAGAGAATCGTCTTCGCAAGAACCAGGAAGAGGAGATCGAGCG
TGAGAAGGCCAAACAAGATGCCATCGCCGCCCAAAAGGTTGCCGAGCAAA
AAGAACTACAAATCAAGCGTGAAGGGGAACAAGCTGCGGCGGCCAGCCTG
CAGAGAGAACAGCGTGCGGCTGAAGAGCTTGCTAAGCTTTCCATCGCCCC
AGAGCAAAATGTGGAAGCAGCAGCAGCGGCAGCAGCCAAGAAGGAAGCCG
AGATGAAAGCCGCGGCTGAAGCGAAGGCGGCGGCTGAAGCGAAGGCGGCG
GCCGAAGCGAAGGCCAAGGCGGATGCAGCAGCAGCAGCAGCGGCAGCAAA
GAAGGAGGCCGAGTTGAAAGCCGCGGCTGAAGCAAAAGCGGCGGCCGAAG
CGAAGGCCAAGGCGGATGCAGAAGCAGCAGCAGCGGCAGCAGCCAAGAAG
GAAGCCGAGATGATAGCCGCGGCTGAAGCAAAAGCGGCGGCTGAAGCGAA
GGCCAAGGCGGATGCAGAGGCAGCAGCAGCGGCAGCAGCCAAGAAGGAAG
CCGAGATGAAAGCCGCGGCTGAAGCGAAGGCCAAGGCGGATGCAGAGGCA
TCAGCAGCGGCAGCAGCCAAGAAGGAAGCCGAGATGAAAGCCGCGGCTGA
AGCGAAGGCCAAGGCGGATGCAGAGGCAGCAGCAGCGGCAGCAGCCAAGA
AGGAAGCCGAGATGAAAGCCGCGGCTGAAGCGAAGGCCAAGGCGGATGCA
GAGGCAGCAGCAGCGGCAGCAGCCAAGAAGGAAGCCGAGATGAAAGCCGC
GGCTGAAGCTAAGGCCAAATCAGATGCGGAAGACATACGCAAGCAAGAAA
AAGCACAGGCATTCAAAACAAAGCAAGCAGAGGAGGCTAGGGCGGCTGCT
GAGAAGCGAGCTGATGCTGTCAAGGCCAAGCGTGAGAAGGAGCAGGCGGA
AGAGCGACAGCGTTTAATCAAGGTGAAGGCAGCAAAGGAGGGCGCGGCAG
CCAAACATGCTGAGAAGAAGCAATTAGAAGTGCAAGCAAAGGCGGGTGCA
AAGACAAAGGCCCCTGCTCCTATTACCTCTGATGTTCCTAAGAATACCAC
TCCTGCTTCTGTTGCTGCTCCTGAAGCTGTTCCGGCACCAAACAAGCCCG
TCGAGTTAAGCGCCGCAGAGCAGGCGGCTCAACGTGCACGACGAGAGGAG
GAGATTCGGGCCCGGGCACGAGAGACGCAAAAAGAGTTGTCGAAGCGGAT
GGTGGCCGATTTGACCGAAAAATTGTCGATTCCCAAGTTGAAGGATTACT
TGAAGCAGAATAAGGTGAAGGGCCCGAAGAGTAGTGCGAAAAAGGCAGAC
TTTGTGAGTGCTGCCTTGACTGTAGCGGAGACAAAAGGATGGGAAGCTTC
AGTGATGGAGTTGCAGAGTTTGAGCAGCGTGCAGGCCAAGGGGTTTGGGG
GTGGCGGGGCGTCGAAGGGAGATGCGAAGAAAAAGAAGTAA

Synonyms

Publications