jgi.p|Nanoce1779_2|584643, mRNA_3121 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584643
Unique Name	mRNA_3121
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2192
Alignment location	scaffold_7:707579..709770 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584729
Track	FilteredModels2
ProteinId	584643

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:707579..709770 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584643	gene_3121	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584643	mRNA_3121-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3121	CDS_3121	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:707579..709770-
coding sequence from alignment at scaffold_7:707579..709770-

mRNA sequence

>mRNA_3121 ID=mRNA_3121|Name=jgi.p|Nanoce1779_2|584643|organism=Nannochloropsis oceanica|type=mRNA|length=2192bp
ACAGGATAAGCCAAGAGCCAGCAAAGGGACACGACGAAGGGTTGCTTGGG
CGGCGGTCGGTCGTGTGTGCTAGGGAGGCCCAGTCAGACACTTGCATCGG
TAAGATTCGGGGCTGATTCTTGTCCGAGCAAAAGTTACGCTGGCCCACGA
CCAGCCCTTTCTTTAGAGCCCACAATCTGCGGATCAAGTAGTGCGATAGG
GTTACGACTAAGCCGGGCCACAATCCCTCACTTCTCCCCCCTTGCTTTCG
TTGAAACATTCCACGCGAGCTACTTTTCTCCTTGAGCACCTCCATTCCCC
GCCTACACCACCGTCTCTGCAAATGCTCATGCTGGCACGTCTATTGTTTG
TCGTAGTAGCGTGCGGGGTGTTGGTCGTGTCTCGGGTCTTGATCGTGCAA
GGCGAGAAGGGCAGAGGCTCAGGCTCGGCTGGGAGCCATGTCCGCTTACC
TATGACTTTCGACGGCCTAGGTGGGGCAGCCTCAAGAAATGAGAACATGG
ACGGACCTCTTGACTATGACAGCATCACAGGGAAGAGTAGCAGCAGCAAG
CTGAGCTACCGCCGGCTTCGGAAGGCTTCCAGAGCTGCCGCGGCGCCGGG
ACACCACTACGACGACGGCCTCAACGTGCTCGACTTGAGCGGGGGCATGG
CCCGTCGCACGTGGCCTTTGCAGAGGATCCGCATGCGGTTACGTTCTCAA
GTGCTTCATTTAAGGGAATCCTGGCGATTTTCCAATTCATCCAAACTGGT
TGCAGCGCTGATATCTCGCTTGCCCCAACGGTCGCAACGGCAGAAAGGAG
CGTCGGAAAAGAGATCTACGAGAAATCTGGGCTTGTTTGCCGAGAGATTG
ATTCGGCAGTTGAGACGGCAGCAGGCAGGGCTAATGGATGCGACTGGAGA
AGTTTTGGCTGGCGATGGTGCGGCGTCTCTGGATGGGGTAGACTCGCGGT
ACCTGTCGTTGCTTCGTTCTTTAGAGGAAGAGGGACACAAAGCCTTGATT
GAGGAGGGGGATGACTGGCATCAGGTCTCAGAGAAGGAGGACACTAAGGT
GTGGAAGCGGGTGCAGGCAGAGGATACATATGGGAGGGAATACCCATGCC
TGAAGCTGTCGACGGTCTTGCACGCGCCGCCGGACGCGGTGATAGATTTG
TTGGTCGACTCGGAGCGTGTGGCCGAGTACAATAAATACAGCAAAGGCCG
GCAAGATATCGCACAAGTAGGGCCCAACACCAAAATTGTCCGAAATCGTA
CCCTGCCTCCGTTACAGAAACGCGCGCATGAATTTTGTACGATCATGCAC
GTTATTCGCCGGCCCGATGGTAGTCAGGTTATGCTGACCAAATACACCGA
TCACCCGGAAGTACCACGCTCCTCCGCCTTCGCTCGATCGGAGATTATTT
TGGGAGTGACCGAGGTAAAGCCCCATCCGACGGACCCCGACCGCGCGCAA
CTCACGACTGTGAGTCACGTCAAGTCGGCAGGAGTTCCCCCGTTTGTTGC
CGAAAAATTTAGTGTGAGAGGGGTGGTGGATTTTGCGGACAGTCTGAGGA
AGGCCTTGCATTCAGGGAAGCAGCAGGGGCAGAAAGACCAAGGGCGGCAG
GATAATAGGTTTGGGGAACTGCTGGATCAATGACAACAGCACCAGCAACA
ACAGCACCAGCAACAACAGCCCCAACTCGCCTAAAAGTTGGGAAATGATC
TGATGATGATAACTGGTGTGAGCTTTTTTGGTGCAGATATGTAATTTATT
TTACTTTTGTACCACGTGCTGTGTGTGGGTATGTCGGAGACGAGTTTTAT
TGGGTTCGTGCGCATGACAAACGACACACCCCGAGCACTGTCATCAATAC
AACCACTATCACCATCATCAGGACTTGGTGTGTGGGTACTGCGGCCGAAA
AATTGTACTTATGCATGTAAAATAGGAAAGCAGGAAAGAGAACGAGAGCA
AGCTTGTCTCTGCCTGAGTGAAAAACTATCTGGGAAATTAAGGAACATTG
CAATTTAGTGGACGGGCAAATGAGCAAATCAGCATTGAATGAAAAGTAGT
AGCTGCAGTGGTGGTAGTAACGGCCAAAACAGAGGGACAAAAATCCCACG
ATAACATAATCCTCCCCAGCCATGCATTTTGGGGGAGGGAAAAGAATGAT
GGAAACCCGAAAATTAGACGATGAGAAAAGTCAGCAAGCATG

protein sequence of jgi.p|Nanoce1779_2|584643

>mRNA_3121-protein ID=mRNA_3121-protein|Name=jgi.p|Nanoce1779_2|584643|organism=Nannochloropsis oceanica|type=polypeptide|length=437bp
MLMLARLLFVVVACGVLVVSRVLIVQGEKGRGSGSAGSHVRLPMTFDGLG
GAASRNENMDGPLDYDSITGKSSSSKLSYRRLRKASRAAAAPGHHYDDGL
NVLDLSGGMARRTWPLQRIRMRLRSQVLHLRESWRFSNSSKLVAALISRL
PQRSQRQKGASEKRSTRNLGLFAERLIRQLRRQQAGLMDATGEVLAGDGA
ASLDGVDSRYLSLLRSLEEEGHKALIEEGDDWHQVSEKEDTKVWKRVQAE
DTYGREYPCLKLSTVLHAPPDAVIDLLVDSERVAEYNKYSKGRQDIAQVG
PNTKIVRNRTLPPLQKRAHEFCTIMHVIRRPDGSQVMLTKYTDHPEVPRS
SAFARSEIILGVTEVKPHPTDPDRAQLTTVSHVKSAGVPPFVAEKFSVRG
VVDFADSLRKALHSGKQQGQKDQGRQDNRFGELLDQ*

mRNA from alignment at scaffold_7:707579..709770-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3121 ID=mRNA_3121|Name=jgi.p|Nanoce1779_2|584643|organism=Nannochloropsis oceanica|type=mRNA|length=2192bp|location=Sequence derived from alignment at scaffold_7:707579..709770- (Nannochloropsis oceanica)
ACAGGATAAGCCAAGAGCCAGCAAAGGGACACGACGAAGGGTTGCTTGGG
CGGCGGTCGGTCGTGTGTGCTAGGGAGGCCCAGTCAGACACTTGCATCGG
TAAGATTCGGGGCTGATTCTTGTCCGAGCAAAAGTTACGCTGGCCCACGA
CCAGCCCTTTCTTTAGAGCCCACAATCTGCGGATCAAGTAGTGCGATAGG
GTTACGACTAAGCCGGGCCACAATCCCTCACTTCTCCCCCCTTGCTTTCG
TTGAAACATTCCACGCGAGCTACTTTTCTCCTTGAGCACCTCCATTCCCC
GCCTACACCACCGTCTCTGCAAATGCTCATGCTGGCACGTCTATTGTTTG
TCGTAGTAGCGTGCGGGGTGTTGGTCGTGTCTCGGGTCTTGATCGTGCAA
GGCGAGAAGGGCAGAGGCTCAGGCTCGGCTGGGAGCCATGTCCGCTTACC
TATGACTTTCGACGGCCTAGGTGGGGCAGCCTCAAGAAATGAGAACATGG
ACGGACCTCTTGACTATGACAGCATCACAGGGAAGAGTAGCAGCAGCAAG
CTGAGCTACCGCCGGCTTCGGAAGGCTTCCAGAGCTGCCGCGGCGCCGGG
ACACCACTACGACGACGGCCTCAACGTGCTCGACTTGAGCGGGGGCATGG
CCCGTCGCACGTGGCCTTTGCAGAGGATCCGCATGCGGTTACGTTCTCAA
GTGCTTCATTTAAGGGAATCCTGGCGATTTTCCAATTCATCCAAACTGGT
TGCAGCGCTGATATCTCGCTTGCCCCAACGGTCGCAACGGCAGAAAGGAG
CGTCGGAAAAGAGATCTACGAGAAATCTGGGCTTGTTTGCCGAGAGATTG
ATTCGGCAGTTGAGACGGCAGCAGGCAGGGCTAATGGATGCGACTGGAGA
AGTTTTGGCTGGCGATGGTGCGGCGTCTCTGGATGGGGTAGACTCGCGGT
ACCTGTCGTTGCTTCGTTCTTTAGAGGAAGAGGGACACAAAGCCTTGATT
GAGGAGGGGGATGACTGGCATCAGGTCTCAGAGAAGGAGGACACTAAGGT
GTGGAAGCGGGTGCAGGCAGAGGATACATATGGGAGGGAATACCCATGCC
TGAAGCTGTCGACGGTCTTGCACGCGCCGCCGGACGCGGTGATAGATTTG
TTGGTCGACTCGGAGCGTGTGGCCGAGTACAATAAATACAGCAAAGGCCG
GCAAGATATCGCACAAGTAGGGCCCAACACCAAAATTGTCCGAAATCGTA
CCCTGCCTCCGTTACAGAAACGCGCGCATGAATTTTGTACGATCATGCAC
GTTATTCGCCGGCCCGATGGTAGTCAGGTTATGCTGACCAAATACACCGA
TCACCCGGAAGTACCACGCTCCTCCGCCTTCGCTCGATCGGAGATTATTT
TGGGAGTGACCGAGGTAAAGCCCCATCCGACGGACCCCGACCGCGCGCAA
CTCACGACTGTGAGTCACGTCAAGTCGGCAGGAGTTCCCCCGTTTGTTGC
CGAAAAATTTAGTGTGAGAGGGGTGGTGGATTTTGCGGACAGTCTGAGGA
AGGCCTTGCATTCAGGGAAGCAGCAGGGGCAGAAAGACCAAGGGCGGCAG
GATAATAGGTTTGGGGAACTGCTGGATCAATGACAACAGCACCAGCAACA
ACAGCACCAGCAACAACAGCCCCAACTCGCCTAAAAGTTGGGAAATGATC
TGATGATGATAACTGGTGTGAGCTTTTTTGGTGCAGATATGTAATTTATT
TTACTTTTGTACCACGTGCTGTGTGTGGGTATGTCGGAGACGAGTTTTAT
TGGGTTCGTGCGCATGACAAACGACACACCCCGAGCACTGTCATCAATAC
AACCACTATCACCATCATCAGGACTTGGTGTGTGGGTACTGCGGCCGAAA
AATTGTACTTATGCATGTAAAATAGGAAAGCAGGAAAGAGAACGAGAGCA
AGCTTGTCTCTGCCTGAGTGAAAAACTATCTGGGAAATTAAGGAACATTG
CAATTTAGTGGACGGGCAAATGAGCAAATCAGCATTGAATGAAAAGTAGT
AGCTGCAGTGGTGGTAGTAACGGCCAAAACAGAGGGACAAAAATCCCACG
ATAACATAATCCTCCCCAGCCATGCATTTTGGGGGAGGGAAAAGAATGAT
GGAAACCCGAAAATTAGACGATGAGAAAAGTCAGCAAGCATG

Coding sequence (CDS) from alignment at scaffold_7:707579..709770-

>mRNA_3121 ID=mRNA_3121|Name=jgi.p|Nanoce1779_2|584643|organism=Nannochloropsis oceanica|type=CDS|length=1311bp|location=Sequence derived from alignment at scaffold_7:707579..709770- (Nannochloropsis oceanica)
ATGCTCATGCTGGCACGTCTATTGTTTGTCGTAGTAGCGTGCGGGGTGTT
GGTCGTGTCTCGGGTCTTGATCGTGCAAGGCGAGAAGGGCAGAGGCTCAG
GCTCGGCTGGGAGCCATGTCCGCTTACCTATGACTTTCGACGGCCTAGGT
GGGGCAGCCTCAAGAAATGAGAACATGGACGGACCTCTTGACTATGACAG
CATCACAGGGAAGAGTAGCAGCAGCAAGCTGAGCTACCGCCGGCTTCGGA
AGGCTTCCAGAGCTGCCGCGGCGCCGGGACACCACTACGACGACGGCCTC
AACGTGCTCGACTTGAGCGGGGGCATGGCCCGTCGCACGTGGCCTTTGCA
GAGGATCCGCATGCGGTTACGTTCTCAAGTGCTTCATTTAAGGGAATCCT
GGCGATTTTCCAATTCATCCAAACTGGTTGCAGCGCTGATATCTCGCTTG
CCCCAACGGTCGCAACGGCAGAAAGGAGCGTCGGAAAAGAGATCTACGAG
AAATCTGGGCTTGTTTGCCGAGAGATTGATTCGGCAGTTGAGACGGCAGC
AGGCAGGGCTAATGGATGCGACTGGAGAAGTTTTGGCTGGCGATGGTGCG
GCGTCTCTGGATGGGGTAGACTCGCGGTACCTGTCGTTGCTTCGTTCTTT
AGAGGAAGAGGGACACAAAGCCTTGATTGAGGAGGGGGATGACTGGCATC
AGGTCTCAGAGAAGGAGGACACTAAGGTGTGGAAGCGGGTGCAGGCAGAG
GATACATATGGGAGGGAATACCCATGCCTGAAGCTGTCGACGGTCTTGCA
CGCGCCGCCGGACGCGGTGATAGATTTGTTGGTCGACTCGGAGCGTGTGG
CCGAGTACAATAAATACAGCAAAGGCCGGCAAGATATCGCACAAGTAGGG
CCCAACACCAAAATTGTCCGAAATCGTACCCTGCCTCCGTTACAGAAACG
CGCGCATGAATTTTGTACGATCATGCACGTTATTCGCCGGCCCGATGGTA
GTCAGGTTATGCTGACCAAATACACCGATCACCCGGAAGTACCACGCTCC
TCCGCCTTCGCTCGATCGGAGATTATTTTGGGAGTGACCGAGGTAAAGCC
CCATCCGACGGACCCCGACCGCGCGCAACTCACGACTGTGAGTCACGTCA
AGTCGGCAGGAGTTCCCCCGTTTGTTGCCGAAAAATTTAGTGTGAGAGGG
GTGGTGGATTTTGCGGACAGTCTGAGGAAGGCCTTGCATTCAGGGAAGCA
GCAGGGGCAGAAAGACCAAGGGCGGCAGGATAATAGGTTTGGGGAACTGC
TGGATCAATGA

Synonyms

Publications