jgi.p|Nanoce1779_2|553670, mRNA_3120 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|553670
Unique Name	mRNA_3120
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1743
Alignment location	scaffold_7:705425..707215 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	553756
Track	FilteredModels2
ProteinId	553670

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:705425..707215 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|553670	gene_3120	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|553670	mRNA_3120-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3120	CDS_3120	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:705425..707215+
coding sequence from alignment at scaffold_7:705425..707215+

mRNA sequence

>mRNA_3120 ID=mRNA_3120|Name=jgi.p|Nanoce1779_2|553670|organism=Nannochloropsis oceanica|type=mRNA|length=1743bp
TCATCGTGATGCCGGGCGACGCAACGACACCAAGCGGCCCACGCCCCTCT
TCTTGCAAGTTGAATGCCTCTTAAGCGTCTGCCATCCAGAGTAGACGCGA
CAACCACATCAACGTGACAATGACGACTAACACCTTGTTACCCGCCACTC
AACCGGGGTACCCATGACAGCCGAAGCTAACAAGGCACACCATCATCGAG
GCCCCCTCATTTTACGCGCCCGTTATTCTAACTGCCTTTGCACCCTCCCG
AATCGCTGTCACGCAACACTTGACTAGCCAGCGCCATGGAAGTCGGTGGG
GGCGAGACGGTGGAGAGTGTGCTGAAGCGGCTTGAACAGAAGAGCGAATA
CGCCGTGGTACGAGGAACATGCGTAGGCATTCTCTTCATTTCCCTGTGGG
CTCTCAACCTGCACGTCTTTAAGGTTGCACACATCGACATCTCCTGCATA
TACCCGGCGAAGCTCGTGCCAAACGCGACAGGGATCAACAGTAATGGTAG
CGGAGGAGCGAGTGGCGGGCCAAGTTCCAGCAACAGCAGCGGCTGTACCA
ACAGCAGCGGCAGCAACATCAGCAACACCACCTCGAGCAGCAGCAGAATA
TCCCATTCCGCCCTTCAACAACCCCACCAGCCCGTGTGCCACCCGCGCAA
GGTCGTTGGTCTTGTTACGTCATTAATCATGGGCATGGTGGTATGCACCC
TCCTTATGTCGGAGCTTCTGGGTCAACCCTACCAACACGCCCCCTTTGTC
TTCTACTTTCTTCTCCTCGCCGCCCTCCTCTATCCCTTTGACACAACCCG
GGTCTTCCGCGAGTTCGCTGTCCTCTTCGGGCGGGTACTCTGGCTCGTCT
TCTTCCCTGGAAGCGAAGTGCATTTCCTAGAAGTCCTAGTGGGTGATATA
TTGACCAGCATGTCCAAAGTCTTTTTCGAAATCGGTCTCGCTTGTGTTGC
GACTCTCCTCGCCCTCTCCCCCACTTTCTTCCGCGTCCTTTCTCCAGATA
TCCTACCTACGCTCATGGCAAGTACACCCTTCATCCTGCGAATCCGCCAA
TGCCTGGTGCAACACCGAGGGGCGACGTCAGAAAAAAGTCGATTTCTCAT
TTCGCTCAATATCTTAAAGTACTGCTCCTCGATTCCTGGCCTATGGCTGC
CCCTCCTCCTTGCCCCCCATTACGCAACCCGACAAATTGAACGTGTATTG
CTGTGGGTACTGTTAGTTAATTCTTTGTATTCTTTTCTATGGGATGTCAT
CATGGATTGGGGTCTAGGACACATCAACCTGAGCGGCCACGGGGAAAGAA
GTCCGTCATCGAGATTAAGGCATTGGGGCCTGAGGCCGACATTGTTATTT
GGGTCGGCGGGGTCTTATTATGCGGCCATTGGGTTGGATTTGGTGCTTCG
GTTGGTGTGGGTGTTGAAGTACGTGGAGTTTGACCACCGGCTTTCATATG
ATAAATTCATGTTGTTGATTGAGGGGTTGGAGGTGCTCAGGAGAGGGGTA
TGGTCGATATATAGGATTGAGTGGGAGTGTTTGAATTTGACGGGGGGTAG
GAGGGTGGAGGGTGGGGGAGGGATAAGTATGGTGGATGTTGGAAAGGGGG
GACTGGCAGGAGGAGGAGGGTTTGTGGGAAAGAAGGGAGTGGGAGGTCAT
GATAGTGATGAAAGTGTTGACTTGGAGAGGTCGTTGGGGATGGATGAGGA
TGACATTGGAATGGAGGTGACGAGTAAATTGTTGTCGCGTTGA

protein sequence of jgi.p|Nanoce1779_2|553670

>mRNA_3120-protein ID=mRNA_3120-protein|Name=jgi.p|Nanoce1779_2|553670|organism=Nannochloropsis oceanica|type=polypeptide|length=486bp
MEVGGGETVESVLKRLEQKSEYAVVRGTCVGILFISLWALNLHVFKVAHI
DISCIYPAKLVPNATGINSNGSGGASGGPSSSNSSGCTNSSGSNISNTTS
SSSRISHSALQQPHQPVCHPRKVVGLVTSLIMGMVVCTLLMSELLGQPYQ
HAPFVFYFLLLAALLYPFDTTRVFREFAVLFGRVLWLVFFPGSEVHFLEV
LVGDILTSMSKVFFEIGLACVATLLALSPTFFRVLSPDILPTLMASTPFI
LRIRQCLVQHRGATSEKSRFLISLNILKYCSSIPGLWLPLLLAPHYATRQ
IERVLLWVLLVNSLYSFLWDVIMDWGLGHINLSGHGERSPSSRLRHWGLR
PTLLFGSAGSYYAAIGLDLVLRLVWVLKYVEFDHRLSYDKFMLLIEGLEV
LRRGVWSIYRIEWECLNLTGGRRVEGGGGISMVDVGKGGLAGGGGFVGKK
GVGGHDSDESVDLERSLGMDEDDIGMEVTSKLLSR*

mRNA from alignment at scaffold_7:705425..707215+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3120 ID=mRNA_3120|Name=jgi.p|Nanoce1779_2|553670|organism=Nannochloropsis oceanica|type=mRNA|length=1791bp|location=Sequence derived from alignment at scaffold_7:705425..707215+ (Nannochloropsis oceanica)
TCATCGTGATGCCGGGCGACGCAACGACACCAAGCGGCCCACGCCCCTCT
TCTTGCAAGTTGAATGCCTCTTAAGCGTCTGCCATCCAGAGTAGACGCGA
CAACCACATCAACGTGACAATGACGACTAACACCTTGTTACCCGCCACTC
AACCGGGGTACCCATGACAGCCGAAGCTAACAAGGCACACCATCATCGAG
GCCCCCTCATTTTACGCGCCCGTTATTCTAACTGCCTTTGCACCCTCCCG
AATCGCTGTCACGCAACACTTGACTAGCCAGCGCCATGGAAGTCGGTGGG
GGCGAGACGGTGGAGAGTGTGCTGAAGCGGCTTGAACAGAAGAGCGAATA
CGCCGTGGTACGAGGAACATGCGTAGGCATTCTCTTCATTTCCCTGTGGG
CTCTCAACCTGCACGTCTTTAAGGTTGCACACATCGACATCTCCTGCATA
TACCCGGCGAAGCTCGTGCCAAACGCGACAGGGATCAACAGTAATGGTAG
CGGAGGAGCGAGTGGCGGGCCAAGTTCCAGCAACAGCAGCGGCTGTACCA
ACAGCAGCGGCAGCAACATCAGCAACACCACCTCGAGCAGCAGCAGAATA
TCCCATTCCGCCCTTCAACAACCCCACCAGCCCGTGTGCCACCCGCGCAA
GGTCGTTGGTCTTGTTACGTCATTAATCATGGGCATGGTGGTATGCACCC
TCCTTATGTCGGAGCTTCTGGGTCAACCCTACCAACACGCCCCCTTTGTC
TTCTACTTTCTTCTCCTCGCCGCCCTCCTCTATCCCTTTGACACAACCCG
GGTCTTCCGCGAGTTCGCTGTCCTCTTCGGGCGGGTACTCTGGCTCGTCT
TCTTCCCTGGAAGCGAAGTGCATTTCCTAGAAGTCCTAGTGGGTGATATA
TTGACCAGCATGTCCAAAGTCTTTTTCGAAATCGGTCTCGCTTGTGTTGC
GACTCTCCTCGCCCTCTCCCCCACTTTCTTCCGCGTCCTTTCTCCAGATA
TCCTACCTACGCTCATGGCAAGTACACCCTTCATCCTGCGAATCCGCCAA
TGCCTGGTGCAACACCGAGGGGCGACGTCAGAAAAAAGTCGATTTCTCAT
TTCGCTCAATATCTTAAAGTACTGCTCCTCGATTCCTGGCCTATGGCTGC
CCCTCCTCCTTGCCCCCCATTACGCAACCCGACAAATTGAACGTGTATTG
CTGTGGGTACTGTTAGTTAATTCTTTGTATTCTTTTCTATGGGATGTCAT
CATGGATTGGGGTCTAGGACACATCAACCTGAGCGGCCACGGTAGCAGCA
GCAGCAGCACCAGTGGCGGCGGTAGGAAAGGCGGGGGAGGGGAAAGAAGT
CCGTCATCGAGATTAAGGCATTGGGGCCTGAGGCCGACATTGTTATTTGG
GTCGGCGGGGTCTTATTATGCGGCCATTGGGTTGGATTTGGTGCTTCGGT
TGGTGTGGGTGTTGAAGTACGTGGAGTTTGACCACCGGCTTTCATATGAT
AAATTCATGTTGTTGATTGAGGGGTTGGAGGTGCTCAGGAGAGGGGTATG
GTCGATATATAGGATTGAGTGGGAGTGTTTGAATTTGACGGGGGGTAGGA
GGGTGGAGGGTGGGGGAGGGATAAGTATGGTGGATGTTGGAAAGGGGGGA
CTGGCAGGAGGAGGAGGGTTTGTGGGAAAGAAGGGAGTGGGAGGTCATGA
TAGTGATGAAAGTGTTGACTTGGAGAGGTCGTTGGGGATGGATGAGGATG
ACATTGGAATGGAGGTGACGAGTAAATTGTTGTCGCGTTGA

Coding sequence (CDS) from alignment at scaffold_7:705425..707215+

>mRNA_3120 ID=mRNA_3120|Name=jgi.p|Nanoce1779_2|553670|organism=Nannochloropsis oceanica|type=CDS|length=2916bp|location=Sequence derived from alignment at scaffold_7:705425..707215+ (Nannochloropsis oceanica)
ATGGAAGTCGGTGGGGGCGAGACGGTGGAGAGTGTGCTGAAGCGGCTTGA
ACAGAAGAGCGAATACGCCGTGGTACGAGGAACATGCGTAGGCATTCTCT
TCATTTCCCTGTGGGCTCTCAACCTGCACGTCTTTAAGGTTGCACACATC
GACATCTCCTGCATATACCCGGCGAAGCTCGTGCCAAACGCGACAGGGAT
CAACAGTAATGGTAGCGGAGGAGCGAGTGGCGGGCCAAGTTCCAGCAACA
GCAGCGGCTGTACCAACAGCAGCGGCAGCAACATCAGCAACACCACCTCG
AGCAGCAGCAGAATATCCCATTCCGCCCTTCAACAACCCCACCAGCCCGT
GTGCCACCCGCGCAAGGTCGTTGGTCTTGTTACGTCATTAATCATGGGCA
TGGTGGTATGCACCCTCCTTATGTCGGAGCTTCTGGGTCAACCCTACCAA
CACGCCCCCTTTGTCTTCTACTTTCTTCTCCTCGCCGCCCTCCTCTATCC
CTTTGACACAACCCGGGTCTTCCGCGAGTTCGCTGTCCTCTTCGGGCGGG
TACTCTGGCTCGTCTTCTTCCCTGGAAGCGAAGTGCATTTCCTAGAAGTC
CTAGTGGGTGATATATTGACCAGCATGTCCAAAGTCTTTTTCGAAATCGG
TCTCGCTTGTGTTGCGACTCTCCTCGCCCTCTCCCCCACTTTCTTCCGCG
TCCTTTCTCCAGATATCCTACCTACGCTCATGGCAAGTACACCCTTCATC
CTGCGAATCCGCCAATGCCTGGTGCAACACCGAGGGGCGACGTCAGAAAA
AAGTCGATTTCTCATTTCGCTCAATATCTTAAAGTACTGCTCCTCGATTC
CTGGCCTATGGCTGCCCCTCCTCCTTGCCCCCCATTACGCAACCCGACAA
ATTGAACGTGTATTGCTGTGGGTACTGTTAGTTAATTCTTTGTATTCTTT
TCTATGGGATGTCATCATGGATTGGGGTCTAGGACACATCAACCTGAGCG
GCCACGGGGAAAGAAGTCCGTCATCGAGATTAAGGCATTGGGGCCTGAGG
CCGACATTGTTATTTGGGTCGGCGGGGTCTTATTATGCGGCCATTGGGTT
GGATTTGGTGCTTCGGTTGGTGTGGGTGTTGAAGTACGTGGAGTTTGACC
ACCGGCTTTCATATGATAAATTCATGTTGTTGATTGAGGGGTTGGAGGTG
CTCAGGAGAGGGGTATGGTCGATATATAGGATTGAGTGGGAGTGTTTGAA
TTTGACGGGGGGTAGGAGGGTGGAGGGTGGGGGAGGGATAAGTATGGTGG
ATGTTGGAAAGGGGGGACTGGCAGGAGGAGGAGGGTTTGTGGGAAAGAAG
GGAGTGGGAGGTCATGATAGTGATGAAAGTGTTGACTTGGAGAGGTCGTT
GGGGATGGATGAGGATGACATTGGAATGGAGGTGACGAGTAAATTGTTGT
CGCGTTGAATGGAAGTCGGTGGGGGCGAGACGGTGGAGAGTGTGCTGAAG
CGGCTTGAACAGAAGAGCGAATACGCCGTGGTACGAGGAACATGCGTAGG
CATTCTCTTCATTTCCCTGTGGGCTCTCAACCTGCACGTCTTTAAGGTTG
CACACATCGACATCTCCTGCATATACCCGGCGAAGCTCGTGCCAAACGCG
ACAGGGATCAACAGTAATGGTAGCGGAGGAGCGAGTGGCGGGCCAAGTTC
CAGCAACAGCAGCGGCTGTACCAACAGCAGCGGCAGCAACATCAGCAACA
CCACCTCGAGCAGCAGCAGAATATCCCATTCCGCCCTTCAACAACCCCAC
CAGCCCGTGTGCCACCCGCGCAAGGTCGTTGGTCTTGTTACGTCATTAAT
CATGGGCATGGTGGTATGCACCCTCCTTATGTCGGAGCTTCTGGGTCAAC
CCTACCAACACGCCCCCTTTGTCTTCTACTTTCTTCTCCTCGCCGCCCTC
CTCTATCCCTTTGACACAACCCGGGTCTTCCGCGAGTTCGCTGTCCTCTT
CGGGCGGGTACTCTGGCTCGTCTTCTTCCCTGGAAGCGAAGTGCATTTCC
TAGAAGTCCTAGTGGGTGATATATTGACCAGCATGTCCAAAGTCTTTTTC
GAAATCGGTCTCGCTTGTGTTGCGACTCTCCTCGCCCTCTCCCCCACTTT
CTTCCGCGTCCTTTCTCCAGATATCCTACCTACGCTCATGGCAAGTACAC
CCTTCATCCTGCGAATCCGCCAATGCCTGGTGCAACACCGAGGGGCGACG
TCAGAAAAAAGTCGATTTCTCATTTCGCTCAATATCTTAAAGTACTGCTC
CTCGATTCCTGGCCTATGGCTGCCCCTCCTCCTTGCCCCCCATTACGCAA
CCCGACAAATTGAACGTGTATTGCTGTGGGTACTGTTAGTTAATTCTTTG
TATTCTTTTCTATGGGATGTCATCATGGATTGGGGTCTAGGACACATCAA
CCTGAGCGGCCACGGGGAAAGAAGTCCGTCATCGAGATTAAGGCATTGGG
GCCTGAGGCCGACATTGTTATTTGGGTCGGCGGGGTCTTATTATGCGGCC
ATTGGGTTGGATTTGGTGCTTCGGTTGGTGTGGGTGTTGAAGTACGTGGA
GTTTGACCACCGGCTTTCATATGATAAATTCATGTTGTTGATTGAGGGGT
TGGAGGTGCTCAGGAGAGGGGTATGGTCGATATATAGGATTGAGTGGGAG
TGTTTGAATTTGACGGGGGGTAGGAGGGTGGAGGGTGGGGGAGGGATAAG
TATGGTGGATGTTGGAAAGGGGGGACTGGCAGGAGGAGGAGGGTTTGTGG
GAAAGAAGGGAGTGGGAGGTCATGATAGTGATGAAAGTGTTGACTTGGAG
AGGTCGTTGGGGATGGATGAGGATGACATTGGAATGGAGGTGACGAGTAA
ATTGTTGTCGCGTTGA

Synonyms

Publications