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Properties
| Property Name | Value |
|---|
| TranscriptId | 537484 |
| Track | FilteredModels2 |
| ProteinId | 537398 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:770790..773767 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_312 ID=mRNA_312|Name=jgi.p|Nanoce1779_2|537398|organism=Nannochloropsis oceanica|type=mRNA|length=2886bp
AGTAAGCACAGCTGCCCTACAAAGAGCCCGAGCACAGAAAGGTCCAGATT
ACAAGCAATATGAGCAGAGCTAGTCAAAGACGGCAGCTTCCCGTGCTTGG
GTTGGTAGCTGGGTGCTTCATCTCATTTGCCAGTGCCTTTGCCGTCCCAC
CCTCGTATTGGGCGCCATTGTCGTCTTCAGTCGCCGCCCCAGCAGAAGTC
ACGAGCACCACAACAGCTTCGCAGTGCCCCCTCCCTACGCCACAGAGTGC
CAGGTCATACAACAATATCCCACCCACCAACGCAGCTTCCGTCTCGACTG
ATGCCACCACTACAGCAGCAGCATCGTCCGTTCTCGCGCAGGAGGATGCG
GAAGTGGCGGCTCTCATCCAAGCAGAGCGGAAGCGACAAATTTCGGGCAT
TGAATTGATTGCAAGCGAGAATTTTGCCTCCAAAGCTGTTTTGGAAGCCT
TGGGCTCCATCATGACCAACAAGTACTCCGAAGGCCGACCAGGTGCCCGC
TATTATGGAGGAAACAAGTACGTGGATGCCTTGGAGAGGCTGTGTGAGGC
GAGGGCGTTGTCGCTTTTTAATCTGTCTTCTGAGAGCTGGGGCGTGAACG
TGCAACCCTACTCGGGTAGCCCAGCCAATTTCGCTGTCTATACTGCGTTG
CTCCAACCCCATGACCGCATAATGGGCCTGGATTTGCCATCGGGGGGGCA
TTTGACACACGGATACTACAACGAAAAGCGGCGGGTCTCGGCGACCTCTA
TATATTTTGAGAGCTTGCCTTATCGCGTGGACCCCGTCACAGGTCTAATT
GATTACGAGGAACTTCAAAAGCTCGCCTTGCTTTTCCGACCCCGCCTTAT
TGTGGCGGGTGGAAGTGCCTACCCGCGTGATTGGGATTACGCACGTTTGC
GAGAGATTGCTGATGCTTGCGGTGCTTACTTGATGACAGATATGGCTCAC
ATAAGTGGCTTGGTCTCCGCGGGGGCGTGCAACAACCCTTTCCCCTACTC
CGACGTTGTCACTTCTACCACGCACAAGTCTTTGCGTGGGCCTCGTTCAG
GCATGATTTTTTTCAAAAAGGAGCTGGCGGAGGCGATTCATTTTGCTGTC
TTTCCCTCTTTGCAAGGGGGGCCGCACAACCACCAGATTGCCGCCTTGGC
CGTGGCGCTGAAGGAGGCGTCCACTCCCTCTTTTCGGCAAGAGTACATTT
GGCAGGTGAAACGCAATGCAGAGGCGCTTGCGATGGGGCTTCAGAGTTTG
GGACATGTCATCGTGACGAATGGCACGGAGAATCATCTCTTATTGTGGGA
TGTGCGTCCACATGGTATAACGGGCTCCAAAGTGGAGAAGCTATTAGAGG
CTATTGCCATTTCGGTGAATAAAAATACAATCCATGGGGATAAAAGTGCT
AGTGCTCCAGGTGGGGTTAGGGTAGGGACCCCAGCCATGACTACACGGGG
GTTGACAGAAGGCGATTTCGTCAAGGTGGCGGCCTTCCTGGATGAAGGCT
TACGGTTGGCTTTGAAGATACAGGCGGGAAGTAGCAGTAAGAAATTGGTG
GATTTTGAAAAGACAATGGTTGCGCATGCGGGCGAAGTGGTAGCGTTAAG
AGAGAGGGTGGAGGCGTTTGCGACACAATATCCGTTTCCATCGTGAGGAG
GGGAGGGGGGCCAGGGAAGGAAAAAAGGGGAAAATGACAAAGCTTTTGAG
AGGCAGTAACGAGAGATGCACGCCCACACCCAGCAGAACAAGAAGAGATG
TAACGAAATGTATATAAATGTAAAGAAGCCGCTGTTTTCATCCTTAAACT
CGATGCAAATTACAGCTGTTGTCTTCTTCCGTATCTACCCTCTTTCCTCG
TCTTACCCCTTGGGCTTCCTGTCACAATCGATCACCACCCGCAACACCGG
CTTCTCCGACGGCAACGCATCAGCAGCATACAAAGAATGCTGCAAATACG
CCCTGTAGGCCGGCAAGAATCTCGACACAAAATCCCCCACCTCCTCATCA
GTCATGCTCCCCTCCTTCCCCTTTTTCTCTCTCATTTTCCGTTCCGCCTC
CAACCGCCACTTGTATATTACCTCTAAGTCCTCCACCTGCACTATCACCC
AAGCATCGACCAGCTCGTGCCATTCCTGATAGCTGCCCAAGTAATTATTC
ACGTCCTTCAATCCCTCCTCACTCCTTCCCCCTTCCTCCCCATCAGAGGG
CCACGGCCTAAATCCAAGCATCCACCCTTCCAGCAAAATAACGTCCACAG
GGCCCTCCACCACTGGCCATCTCTCCCGTGGTGCTCGATCCCCCCATCCT
CCACACAAAGACTTATCATAAAAAGGAACTGTTATATTCTCTCCTTCCCT
AGCGGAAATGCATTTCAAGATGGTTTCTCGGCCTAGGGCGACATCATGCG
TCCCAGCATTCCCCCGGTATTGTAAGAGAGGATTACCTTTGTGCTTTGCC
GCTACGGCTCGTTGCTCTTTGTTGGTTAAATAAAAATCATCAATGGAAAG
AACGACGCACCTCAGCCCGTCTAGCTTGAAGAGAGCTCGGCAGAAATTGA
CTAGGGTCGTCTTGCCAGCGCCTTGGGGAGCATTGATACCCACGACGAGA
GGACAGCGCTGCTGCTGGTGTTGTGGTTGCAATCCTTGTTGTCGTTGTTG
TCGCTGCTGCTGCTGCTGCTGTTGCTGCTGCTGGAGTGGTGATGGCGGCT
CAAACGGCCTATTTCGGCATCGACTCCGCAGCACGAGGCCGCGTAGCCAA
AAGTAAAGCTGGGGACCAAAGGAGGAGAGAGAGATGAAAAATGGGTTGGA
GAAGTGAGATGGAATCAAAAGAAACCCTTTCCTTTCCAACAACAATACAC
ACACTGACACACGTTTGTTTGTTTGTTTGTTTGTTT back to topprotein sequence of jgi.p|Nanoce1779_2|537398 >mRNA_312-protein ID=mRNA_312-protein|Name=jgi.p|Nanoce1779_2|537398|organism=Nannochloropsis oceanica|type=polypeptide|length=529bp
MSRASQRRQLPVLGLVAGCFISFASAFAVPPSYWAPLSSSVAAPAEVTST
TTASQCPLPTPQSARSYNNIPPTNAASVSTDATTTAAASSVLAQEDAEVA
ALIQAERKRQISGIELIASENFASKAVLEALGSIMTNKYSEGRPGARYYG
GNKYVDALERLCEARALSLFNLSSESWGVNVQPYSGSPANFAVYTALLQP
HDRIMGLDLPSGGHLTHGYYNEKRRVSATSIYFESLPYRVDPVTGLIDYE
ELQKLALLFRPRLIVAGGSAYPRDWDYARLREIADACGAYLMTDMAHISG
LVSAGACNNPFPYSDVVTSTTHKSLRGPRSGMIFFKKELAEAIHFAVFPS
LQGGPHNHQIAALAVALKEASTPSFRQEYIWQVKRNAEALAMGLQSLGHV
IVTNGTENHLLLWDVRPHGITGSKVEKLLEAIAISVNKNTIHGDKSASAP
GGVRVGTPAMTTRGLTEGDFVKVAAFLDEGLRLALKIQAGSSSKKLVDFE
KTMVAHAGEVVALRERVEAFATQYPFPS* back to topmRNA from alignment at scaffold_3:770790..773767- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_312 ID=mRNA_312|Name=jgi.p|Nanoce1779_2|537398|organism=Nannochloropsis oceanica|type=mRNA|length=2978bp|location=Sequence derived from alignment at scaffold_3:770790..773767- (Nannochloropsis oceanica)
AGTAAGCACAGCTGCCCTACAAAGAGCCCGAGCACAGAAAGGTCCAGATT
ACAAGCAATATGAGCAGAGCTAGTCAAAGGTAAGCCAGCTCCCAGCTCCT
CCCTCCCTAGCCTCCCCACCCCATCTCATCTCATCATCACTCGCCTCTCA
CACCCCACGCCAATACAAAAGACGGCAGCTTCCCGTGCTTGGGTTGGTAG
CTGGGTGCTTCATCTCATTTGCCAGTGCCTTTGCCGTCCCACCCTCGTAT
TGGGCGCCATTGTCGTCTTCAGTCGCCGCCCCAGCAGAAGTCACGAGCAC
CACAACAGCTTCGCAGTGCCCCCTCCCTACGCCACAGAGTGCCAGGTCAT
ACAACAATATCCCACCCACCAACGCAGCTTCCGTCTCGACTGATGCCACC
ACTACAGCAGCAGCATCGTCCGTTCTCGCGCAGGAGGATGCGGAAGTGGC
GGCTCTCATCCAAGCAGAGCGGAAGCGACAAATTTCGGGCATTGAATTGA
TTGCAAGCGAGAATTTTGCCTCCAAAGCTGTTTTGGAAGCCTTGGGCTCC
ATCATGACCAACAAGTACTCCGAAGGCCGACCAGGTGCCCGCTATTATGG
AGGAAACAAGTACGTGGATGCCTTGGAGAGGCTGTGTGAGGCGAGGGCGT
TGTCGCTTTTTAATCTGTCTTCTGAGAGCTGGGGCGTGAACGTGCAACCC
TACTCGGGTAGCCCAGCCAATTTCGCTGTCTATACTGCGTTGCTCCAACC
CCATGACCGCATAATGGGCCTGGATTTGCCATCGGGGGGGCATTTGACAC
ACGGATACTACAACGAAAAGCGGCGGGTCTCGGCGACCTCTATATATTTT
GAGAGCTTGCCTTATCGCGTGGACCCCGTCACAGGTCTAATTGATTACGA
GGAACTTCAAAAGCTCGCCTTGCTTTTCCGACCCCGCCTTATTGTGGCGG
GTGGAAGTGCCTACCCGCGTGATTGGGATTACGCACGTTTGCGAGAGATT
GCTGATGCTTGCGGTGCTTACTTGATGACAGATATGGCTCACATAAGTGG
CTTGGTCTCCGCGGGGGCGTGCAACAACCCTTTCCCCTACTCCGACGTTG
TCACTTCTACCACGCACAAGTCTTTGCGTGGGCCTCGTTCAGGCATGATT
TTTTTCAAAAAGGAGCTGGCGGAGGCGATTCATTTTGCTGTCTTTCCCTC
TTTGCAAGGGGGGCCGCACAACCACCAGATTGCCGCCTTGGCCGTGGCGC
TGAAGGAGGCGTCCACTCCCTCTTTTCGGCAAGAGTACATTTGGCAGGTG
AAACGCAATGCAGAGGCGCTTGCGATGGGGCTTCAGAGTTTGGGACATGT
CATCGTGACGAATGGCACGGAGAATCATCTCTTATTGTGGGATGTGCGTC
CACATGGTATAACGGGCTCCAAAGTGGAGAAGCTATTAGAGGCTATTGCC
ATTTCGGTGAATAAAAATACAATCCATGGGGATAAAAGTGCTAGTGCTCC
AGGTGGGGTTAGGGTAGGGACCCCAGCCATGACTACACGGGGGTTGACAG
AAGGCGATTTCGTCAAGGTGGCGGCCTTCCTGGATGAAGGCTTACGGTTG
GCTTTGAAGATACAGGCGGGAAGTAGCAGTAAGAAATTGGTGGATTTTGA
AAAGACAATGGTTGCGCATGCGGGCGAAGTGGTAGCGTTAAGAGAGAGGG
TGGAGGCGTTTGCGACACAATATCCGTTTCCATCGTGAGGAGGGGAGGGG
GGCCAGGGAAGGAAAAAAGGGGAAAATGACAAAGCTTTTGAGAGGCAGTA
ACGAGAGATGCACGCCCACACCCAGCAGAACAAGAAGAGATGTAACGAAA
TGTATATAAATGTAAAGAAGCCGCTGTTTTCATCCTTAAACTCGATGCAA
ATTACAGCTGTTGTCTTCTTCCGTATCTACCCTCTTTCCTCGTCTTACCC
CTTGGGCTTCCTGTCACAATCGATCACCACCCGCAACACCGGCTTCTCCG
ACGGCAACGCATCAGCAGCATACAAAGAATGCTGCAAATACGCCCTGTAG
GCCGGCAAGAATCTCGACACAAAATCCCCCACCTCCTCATCAGTCATGCT
CCCCTCCTTCCCCTTTTTCTCTCTCATTTTCCGTTCCGCCTCCAACCGCC
ACTTGTATATTACCTCTAAGTCCTCCACCTGCACTATCACCCAAGCATCG
ACCAGCTCGTGCCATTCCTGATAGCTGCCCAAGTAATTATTCACGTCCTT
CAATCCCTCCTCACTCCTTCCCCCTTCCTCCCCATCAGAGGGCCACGGCC
TAAATCCAAGCATCCACCCTTCCAGCAAAATAACGTCCACAGGGCCCTCC
ACCACTGGCCATCTCTCCCGTGGTGCTCGATCCCCCCATCCTCCACACAA
AGACTTATCATAAAAAGGAACTGTTATATTCTCTCCTTCCCTAGCGGAAA
TGCATTTCAAGATGGTTTCTCGGCCTAGGGCGACATCATGCGTCCCAGCA
TTCCCCCGGTATTGTAAGAGAGGATTACCTTTGTGCTTTGCCGCTACGGC
TCGTTGCTCTTTGTTGGTTAAATAAAAATCATCAATGGAAAGAACGACGC
ACCTCAGCCCGTCTAGCTTGAAGAGAGCTCGGCAGAAATTGACTAGGGTC
GTCTTGCCAGCGCCTTGGGGAGCATTGATACCCACGACGAGAGGACAGCG
CTGCTGCTGGTGTTGTGGTTGCAATCCTTGTTGTCGTTGTTGTCGCTGCT
GCTGCTGCTGCTGTTGCTGCTGCTGGAGTGGTGATGGCGGCTCAAACGGC
CTATTTCGGCATCGACTCCGCAGCACGAGGCCGCGTAGCCAAAAGTAAAG
CTGGGGACCAAAGGAGGAGAGAGAGATGAAAAATGGGTTGGAGAAGTGAG
ATGGAATCAAAAGAAACCCTTTCCTTTCCAACAACAATACACACACTGAC
ACACGTTTGTTTGTTTGTTTGTTTGTTT back to topCoding sequence (CDS) from alignment at scaffold_3:770790..773767- >mRNA_312 ID=mRNA_312|Name=jgi.p|Nanoce1779_2|537398|organism=Nannochloropsis oceanica|type=CDS|length=3174bp|location=Sequence derived from alignment at scaffold_3:770790..773767- (Nannochloropsis oceanica)
ACGGCAGCTTCCCGTGCTTGGGTTGGTAGCTGGGTGCTTCATCTCATTTG
CCAGTGCCTTTGCCGTCCCACCCTCGTATTGGGCGCCATTGTCGTCTTCA
GTCGCCGCCCCAGCAGAAGTCACGAGCACCACAACAGCTTCGCAGTGCCC
CCTCCCTACGCCACAGAGTGCCAGGTCATACAACAATATCCCACCCACCA
ACGCAGCTTCCGTCTCGACTGATGCCACCACTACAGCAGCAGCATCGTCC
GTTCTCGCGCAGGAGGATGCGGAAGTGGCGGCTCTCATCCAAGCAGAGCG
GAAGCGACAAATTTCGGGCATTGAATTGATTGCAAGCGAGAATTTTGCCT
CCAAAGCTGTTTTGGAAGCCTTGGGCTCCATCATGACCAACAAGTACTCC
GAAGGCCGACCAGGTGCCCGCTATTATGGAGGAAACAAGTACGTGGATGC
CTTGGAGAGGCTGTGTGAGGCGAGGGCGTTGTCGCTTTTTAATCTGTCTT
CTGAGAGCTGGGGCGTGAACGTGCAACCCTACTCGGGTAGCCCAGCCAAT
TTCGCTGTCTATACTGCGTTGCTCCAACCCCATGACCGCATAATGGGCCT
GGATTTGCCATCGGGGGGGCATTTGACACACGGATACTACAACGAAAAGC
GGCGGGTCTCGGCGACCTCTATATATTTTGAGAGCTTGCCTTATCGCGTG
GACCCCGTCACAGGTCTAATTGATTACGAGGAACTTCAAAAGCTCGCCTT
GCTTTTCCGACCCCGCCTTATTGTGGCGGGTGGAAGTGCCTACCCGCGTG
ATTGGGATTACGCACGTTTGCGAGAGATTGCTGATGCTTGCGGTGCTTAC
TTGATGACAGATATGGCTCACATAAGTGGCTTGGTCTCCGCGGGGGCGTG
CAACAACCCTTTCCCCTACTCCGACGTTGTCACTTCTACCACGCACAAGT
CTTTGCGTGGGCCTCGTTCAGGCATGATTTTTTTCAAAAAGGAGCTGGCG
GAGGCGATTCATTTTGCTGTCTTTCCCTCTTTGCAAGGGGGGCCGCACAA
CCACCAGATTGCCGCCTTGGCCGTGGCGCTGAAGGAGGCGTCCACTCCCT
CTTTTCGGCAAGAGTACATTTGGCAGGTGAAACGCAATGCAGAGGCGCTT
GCGATGGGGCTTCAGAGTTTGGGACATGTCATCGTGACGAATGGCACGGA
GAATCATCTCTTATTGTGGGATGTGCGTCCACATGGTATAACGGGCTCCA
AAGTGGAGAAGCTATTAGAGGCTATTGCCATTTCGGTGAATAAAAATACA
ATCCATGGGGATAAAAGTGCTAGTGCTCCAGGTGGGGTTAGGGTAGGGAC
CCCAGCCATGACTACACGGGGGTTGACAGAAGGCGATTTCGTCAAGGTGG
CGGCCTTCCTGGATGAAGGCTTACGGTTGGCTTTGAAGATACAGGCGGGA
AGTAGCAGTAAGAAATTGGTGGATTTTGAAAAGACAATGGTTGCGCATGC
GGGCGAAGTGGTAGCGTTAAGAGAGAGGGTGGAGGCGTTTGCGACACAAT
ATCCGTTTCCATCGTGAATGAGCAGAGCTAGTCAAAGACGGCAGCTTCCC
GTGCTTGGGTTGGTAGCTGGGTGCTTCATCTCATTTGCCAGTGCCTTTGC
CGTCCCACCCTCGTATTGGGCGCCATTGTCGTCTTCAGTCGCCGCCCCAG
CAGAAGTCACGAGCACCACAACAGCTTCGCAGTGCCCCCTCCCTACGCCA
CAGAGTGCCAGGTCATACAACAATATCCCACCCACCAACGCAGCTTCCGT
CTCGACTGATGCCACCACTACAGCAGCAGCATCGTCCGTTCTCGCGCAGG
AGGATGCGGAAGTGGCGGCTCTCATCCAAGCAGAGCGGAAGCGACAAATT
TCGGGCATTGAATTGATTGCAAGCGAGAATTTTGCCTCCAAAGCTGTTTT
GGAAGCCTTGGGCTCCATCATGACCAACAAGTACTCCGAAGGCCGACCAG
GTGCCCGCTATTATGGAGGAAACAAGTACGTGGATGCCTTGGAGAGGCTG
TGTGAGGCGAGGGCGTTGTCGCTTTTTAATCTGTCTTCTGAGAGCTGGGG
CGTGAACGTGCAACCCTACTCGGGTAGCCCAGCCAATTTCGCTGTCTATA
CTGCGTTGCTCCAACCCCATGACCGCATAATGGGCCTGGATTTGCCATCG
GGGGGGCATTTGACACACGGATACTACAACGAAAAGCGGCGGGTCTCGGC
GACCTCTATATATTTTGAGAGCTTGCCTTATCGCGTGGACCCCGTCACAG
GTCTAATTGATTACGAGGAACTTCAAAAGCTCGCCTTGCTTTTCCGACCC
CGCCTTATTGTGGCGGGTGGAAGTGCCTACCCGCGTGATTGGGATTACGC
ACGTTTGCGAGAGATTGCTGATGCTTGCGGTGCTTACTTGATGACAGATA
TGGCTCACATAAGTGGCTTGGTCTCCGCGGGGGCGTGCAACAACCCTTTC
CCCTACTCCGACGTTGTCACTTCTACCACGCACAAGTCTTTGCGTGGGCC
TCGTTCAGGCATGATTTTTTTCAAAAAGGAGCTGGCGGAGGCGATTCATT
TTGCTGTCTTTCCCTCTTTGCAAGGGGGGCCGCACAACCACCAGATTGCC
GCCTTGGCCGTGGCGCTGAAGGAGGCGTCCACTCCCTCTTTTCGGCAAGA
GTACATTTGGCAGGTGAAACGCAATGCAGAGGCGCTTGCGATGGGGCTTC
AGAGTTTGGGACATGTCATCGTGACGAATGGCACGGAGAATCATCTCTTA
TTGTGGGATGTGCGTCCACATGGTATAACGGGCTCCAAAGTGGAGAAGCT
ATTAGAGGCTATTGCCATTTCGGTGAATAAAAATACAATCCATGGGGATA
AAAGTGCTAGTGCTCCAGGTGGGGTTAGGGTAGGGACCCCAGCCATGACT
ACACGGGGGTTGACAGAAGGCGATTTCGTCAAGGTGGCGGCCTTCCTGGA
TGAAGGCTTACGGTTGGCTTTGAAGATACAGGCGGGAAGTAGCAGTAAGA
AATTGGTGGATTTTGAAAAGACAATGGTTGCGCATGCGGGCGAAGTGGTA
GCGTTAAGAGAGAGGGTGGAGGCGTTTGCGACACAATATCCGTTTCCATC
GTGAATGAGCAGAGCTAGTCAAAG back to top
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