jgi.p|Nanoce1779_2|584636, mRNA_3119 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584636
Unique NamemRNA_3119
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1148
Alignment locationscaffold_7:703896..705285 -

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Properties
Property NameValue
TranscriptId584722
TrackFilteredModels2
ProteinId584636
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:703896..705285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584636gene_3119Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584636mRNA_3119-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3119CDS_3119Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3119 ID=mRNA_3119|Name=jgi.p|Nanoce1779_2|584636|organism=Nannochloropsis oceanica|type=mRNA|length=1148bp
AGCCATGGAGCAAGCGCAGCAAGCGTTCATAGACGAGGAGTTTGCCAGGG
CCGAAGAGCTATACACCGTCTATCTCACCACTCACCCCGATGACGTCATC
GCCCTTGCCTCCCGCGCTGCCGTATACCTGAAGCTGGACAAGCCGCCTCA
AGCCATGCAAGACGCTGCGAAAGCTGCCACGCTCAAACCCGACTTGGAAG
TGGCATGGTACCGCCAAGGACTCGCTGCCTTTGCTCTCGAGGACTTTGCG
CGGGCCAAAATCGCGTTCATGGAAGGCAAGCAGTTGTTGGGCGAGGGTAC
TGAGCCGGAGGGGCGAAAGTACGCGACATGGCTCCGCAAGGTGGCGGTTG
AGATGGAGGAAGGGGAGGAAGGGGTGAAGGAGGCGTCCAGCGTCACCACC
ACCACTACCACAAGAGAGCCTGCGCCCCTCACCACGCTTAAACCCACGAC
TGCGGCCGCCTTATCTATGCCTGTGCAACCCAAATATCAATACTATCAGA
CCCCGACCCATCTGACTGTGACGCTCCTCCAGAAGGGGCTGAAGGAAGGG
GAGGCTAGCGTGGTGATCCAGCCTCGTCAACTCACAATCAAGGGTAATGA
CGGAAGTACCGTGCTGCTAAAGAGACAGTTATTTGAGGCTGTAATTCCGG
AGGAGAGTGTCATCATTTTTTTTGCAACCAAAGTCGAAATCAAGCTCAAG
AAAGTCACCGAAGGCTTGCCCTGGCCTGACTTGAGTGCTTCTTCCTCCTC
GACGAACGCTGCTTCCGTTCCTGTTTTGCAGCCGCCTCTCTCGTCTTCTT
CTTCTCCTTCATCGTCAGTTTCTTACAGTAGTAGTAAGTGCAGTACTAGC
AGCAAGCCGTTGCGGCCGTACGCCAGCCATAAGGATTGGGGCGCGGTCGA
GCGGGAGATAACGAAGGAGCTGGAGAGCGAGAAGCCGGTAGGGGAGGAAG
CGTTGAACAAATTGTTCAAAGACATTTATTCCAATGCTAGCGACGATACA
CGCAGGGCAATGGTGAAGAGCTATCAGACGTCGGGTGGGACTGTGCTATC
CACGAATTGGGGAGAGGTCGCCAACAAGGATTATGAAAAGGACGAGGAGA
GAAAGGCACCCGAGGGGATGGAGTGGCGGAAGTGGGGATGAAGGGAGG
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protein sequence of jgi.p|Nanoce1779_2|584636

>mRNA_3119-protein ID=mRNA_3119-protein|Name=jgi.p|Nanoce1779_2|584636|organism=Nannochloropsis oceanica|type=polypeptide|length=379bp
MEQAQQAFIDEEFARAEELYTVYLTTHPDDVIALASRAAVYLKLDKPPQA
MQDAAKAATLKPDLEVAWYRQGLAAFALEDFARAKIAFMEGKQLLGEGTE
PEGRKYATWLRKVAVEMEEGEEGVKEASSVTTTTTTREPAPLTTLKPTTA
AALSMPVQPKYQYYQTPTHLTVTLLQKGLKEGEASVVIQPRQLTIKGNDG
STVLLKRQLFEAVIPEESVIIFFATKVEIKLKKVTEGLPWPDLSASSSST
NAASVPVLQPPLSSSSSPSSSVSYSSSKCSTSSKPLRPYASHKDWGAVER
EITKELESEKPVGEEALNKLFKDIYSNASDDTRRAMVKSYQTSGGTVLST
NWGEVANKDYEKDEERKAPEGMEWRKWG*
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mRNA from alignment at scaffold_7:703896..705285-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3119 ID=mRNA_3119|Name=jgi.p|Nanoce1779_2|584636|organism=Nannochloropsis oceanica|type=mRNA|length=1390bp|location=Sequence derived from alignment at scaffold_7:703896..705285- (Nannochloropsis oceanica)
AGCCATGGAGCAAGCGCAGCAAGCGTTCATAGACGAGGAGTTTGCCAGGG
CCGAAGAGGTGCGTGCCCTCCGCACTGTGGAAGGAATGGGGTTGAAAAAA
AGAAAGTTGGCTGCATTTTTCCTCCGCCTGGGACCTAAATCATACGCCAA
AATTCCACCGCCCTGATTCTGCTATATGTGGGTTTATGGCTGAGACTGGG
CATGGCGCTTTCTATCCTCCTCTTCTCCTTCCTCAAAGCCTTCCCTCCTC
CCCTTGCTCCCTACCTCCCCTCTCTTCCCTCCACCGACACACACCCATAG
CTATACACCGTCTATCTCACCACTCACCCCGATGACGTCATCGCCCTTGC
CTCCCGCGCTGCCGTATACCTGAAGCTGGACAAGCCGCCTCAAGCCATGC
AAGACGCTGCGAAAGCTGCCACGCTCAAACCCGACTTGGAAGTGGCATGG
TACCGCCAAGGACTCGCTGCCTTTGCTCTCGAGGACTTTGCGCGGGCCAA
AATCGCGTTCATGGAAGGCAAGCAGTTGTTGGGCGAGGGTACTGAGCCGG
AGGGGCGAAAGTACGCGACATGGCTCCGCAAGGTGGCGGTTGAGATGGAG
GAAGGGGAGGAAGGGGTGAAGGAGGCGTCCAGCGTCACCACCACCACTAC
CACAAGAGAGCCTGCGCCCCTCACCACGCTTAAACCCACGACTGCGGCCG
CCTTATCTATGCCTGTGCAACCCAAATATCAATACTATCAGACCCCGACC
CATCTGACTGTGACGCTCCTCCAGAAGGGGCTGAAGGAAGGGGAGGCTAG
CGTGGTGATCCAGCCTCGTCAACTCACAATCAAGGGTAATGACGGAAGTA
CCGTGCTGCTAAAGAGACAGTTATTTGAGGCTGTAATTCCGGAGGAGAGT
GTCATCATTTTTTTTGCAACCAAAGTCGAAATCAAGCTCAAGAAAGTCAC
CGAAGGCTTGCCCTGGCCTGACTTGAGTGCTTCTTCCTCCTCGACGAACG
CTGCTTCCGTTCCTGTTTTGCAGCCGCCTCTCTCGTCTTCTTCTTCTCCT
TCATCGTCAGTTTCTTACAGTAGTAGTAAGTGCAGTACTAGCAGCAAGCC
GTTGCGGCCGTACGCCAGCCATAAGGATTGGGGCGCGGTCGAGCGGGAGA
TAACGAAGGAGCTGGAGAGCGAGAAGCCGGTAGGGGAGGAAGCGTTGAAC
AAATTGTTCAAAGACATTTATTCCAATGCTAGCGACGATACACGCAGGGC
AATGGTGAAGAGCTATCAGACGTCGGGTGGGACTGTGCTATCCACGAATT
GGGGAGAGGTCGCCAACAAGGATTATGAAAAGGACGAGGAGAGAAAGGCA
CCCGAGGGGATGGAGTGGCGGAAGTGGGGATGAAGGGAGG
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Coding sequence (CDS) from alignment at scaffold_7:703896..705285-

>mRNA_3119 ID=mRNA_3119|Name=jgi.p|Nanoce1779_2|584636|organism=Nannochloropsis oceanica|type=CDS|length=2274bp|location=Sequence derived from alignment at scaffold_7:703896..705285- (Nannochloropsis oceanica)
CTATACACCGTCTATCTCACCACTCACCCCGATGACGTCATCGCCCTTGC
CTCCCGCGCTGCCGTATACCTGAAGCTGGACAAGCCGCCTCAAGCCATGC
AAGACGCTGCGAAAGCTGCCACGCTCAAACCCGACTTGGAAGTGGCATGG
TACCGCCAAGGACTCGCTGCCTTTGCTCTCGAGGACTTTGCGCGGGCCAA
AATCGCGTTCATGGAAGGCAAGCAGTTGTTGGGCGAGGGTACTGAGCCGG
AGGGGCGAAAGTACGCGACATGGCTCCGCAAGGTGGCGGTTGAGATGGAG
GAAGGGGAGGAAGGGGTGAAGGAGGCGTCCAGCGTCACCACCACCACTAC
CACAAGAGAGCCTGCGCCCCTCACCACGCTTAAACCCACGACTGCGGCCG
CCTTATCTATGCCTGTGCAACCCAAATATCAATACTATCAGACCCCGACC
CATCTGACTGTGACGCTCCTCCAGAAGGGGCTGAAGGAAGGGGAGGCTAG
CGTGGTGATCCAGCCTCGTCAACTCACAATCAAGGGTAATGACGGAAGTA
CCGTGCTGCTAAAGAGACAGTTATTTGAGGCTGTAATTCCGGAGGAGAGT
GTCATCATTTTTTTTGCAACCAAAGTCGAAATCAAGCTCAAGAAAGTCAC
CGAAGGCTTGCCCTGGCCTGACTTGAGTGCTTCTTCCTCCTCGACGAACG
CTGCTTCCGTTCCTGTTTTGCAGCCGCCTCTCTCGTCTTCTTCTTCTCCT
TCATCGTCAGTTTCTTACAGTAGTAGTAAGTGCAGTACTAGCAGCAAGCC
GTTGCGGCCGTACGCCAGCCATAAGGATTGGGGCGCGGTCGAGCGGGAGA
TAACGAAGGAGCTGGAGAGCGAGAAGCCGGTAGGGGAGGAAGCGTTGAAC
AAATTGTTCAAAGACATTTATTCCAATGCTAGCGACGATACACGCAGGGC
AATGGTGAAGAGCTATCAGACGTCGGGTGGGACTGTGCTATCCACGAATT
GGGGAGAGGTCGCCAACAAGGATTATGAAAAGGACGAGGAGAGAAAGGCA
CCCGAGGGGATGGAGTGGCGGAAGTGGGGATGAATGGAGCAAGCGCAGCA
AGCGTTCATAGACGAGGAGTTTGCCAGGGCCGAAGAGCTATACACCGTCT
ATCTCACCACTCACCCCGATGACGTCATCGCCCTTGCCTCCCGCGCTGCC
GTATACCTGAAGCTGGACAAGCCGCCTCAAGCCATGCAAGACGCTGCGAA
AGCTGCCACGCTCAAACCCGACTTGGAAGTGGCATGGTACCGCCAAGGAC
TCGCTGCCTTTGCTCTCGAGGACTTTGCGCGGGCCAAAATCGCGTTCATG
GAAGGCAAGCAGTTGTTGGGCGAGGGTACTGAGCCGGAGGGGCGAAAGTA
CGCGACATGGCTCCGCAAGGTGGCGGTTGAGATGGAGGAAGGGGAGGAAG
GGGTGAAGGAGGCGTCCAGCGTCACCACCACCACTACCACAAGAGAGCCT
GCGCCCCTCACCACGCTTAAACCCACGACTGCGGCCGCCTTATCTATGCC
TGTGCAACCCAAATATCAATACTATCAGACCCCGACCCATCTGACTGTGA
CGCTCCTCCAGAAGGGGCTGAAGGAAGGGGAGGCTAGCGTGGTGATCCAG
CCTCGTCAACTCACAATCAAGGGTAATGACGGAAGTACCGTGCTGCTAAA
GAGACAGTTATTTGAGGCTGTAATTCCGGAGGAGAGTGTCATCATTTTTT
TTGCAACCAAAGTCGAAATCAAGCTCAAGAAAGTCACCGAAGGCTTGCCC
TGGCCTGACTTGAGTGCTTCTTCCTCCTCGACGAACGCTGCTTCCGTTCC
TGTTTTGCAGCCGCCTCTCTCGTCTTCTTCTTCTCCTTCATCGTCAGTTT
CTTACAGTAGTAGTAAGTGCAGTACTAGCAGCAAGCCGTTGCGGCCGTAC
GCCAGCCATAAGGATTGGGGCGCGGTCGAGCGGGAGATAACGAAGGAGCT
GGAGAGCGAGAAGCCGGTAGGGGAGGAAGCGTTGAACAAATTGTTCAAAG
ACATTTATTCCAATGCTAGCGACGATACACGCAGGGCAATGGTGAAGAGC
TATCAGACGTCGGGTGGGACTGTGCTATCCACGAATTGGGGAGAGGTCGC
CAACAAGGATTATGAAAAGGACGAGGAGAGAAAGGCACCCGAGGGGATGG
AGTGGCGGAAGTGGGGATGAATGGAGCAAGCGCAGCAAGCGTTCATAGAC
GAGGAGTTTGCCAGGGCCGAAGAG
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Synonyms
Publications