jgi.p|Nanoce1779_2|584633, mRNA_3118 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584633
Unique Name	mRNA_3118
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1283
Alignment location	scaffold_7:702021..703572 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584719
Track	FilteredModels2
ProteinId	584633

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:702021..703572 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584633	gene_3118	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584633	mRNA_3118-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3118	CDS_3118	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:702021..703572+
coding sequence from alignment at scaffold_7:702021..703572+

mRNA sequence

>mRNA_3118 ID=mRNA_3118|Name=jgi.p|Nanoce1779_2|584633|organism=Nannochloropsis oceanica|type=mRNA|length=1283bp
AGGGCCACATGTCATCCTTCCTGAGCCGGCTGCGGCAGAGAGTTTTGCGT
TTCAGTGTCCGGCAGCGGGACCTGCAGGAAAAAGCGGACATTGAAACCGC
TTTGTTACTCACGTCATGGTGGAACCATATCGTGCTACAAGGGCAAGAGG
ACCGAAGTGTGCTGCAGCAAGAAGCGGAGCGTGTGCAACAAATGGCGGGC
TTTCAGCAAGTGAGGACCCTCAAAGAAAACCTCGACACCCAGGTCCTGCG
CATGTTCAAGGCTATACACGCGGCGCGCAAGATTCAAACAGACCCAGCAA
AACTATGTGAGATTTATGGACAAAGCCAGAAAGGCAGCAACGACGAAAAT
GACCCCACCCCTCAACATCCCCAGCACTACCAAGAAGTGGAAAATTGGCA
TCCACCCAAAGGCGCGCGGGGACGACAACAGGCCTCCATGCATTCGCGTG
GAGGAACTGGCAGCAGGGAAGAATACAGGGGCCGTGCCGACGTGGATTCG
GTGCGCAAGGCGTTGCGGCAGCAGTTGGGGTTCACGCTCCGCCGAGGGCC
CTCCACCATCCCCATGGCTGGGGAGGGCATTTTCCTAGAGGGCCGCGTTC
GGATTGGGACGATGGTGGGTTTATATCCCGGCTTGGTTTATTTGCAAGAG
CATGTGCGGAAGCCGGAGGAGGTTGCACAACTTTTCCCTGACCCGGACAT
GTTTTTGTTTCAGAGGTATGATAGGGTTATGGTGGATGGACGGGCAGCAG
AGGAGCAACAGCCGAATGAGTATGCCTTGGCCCATCTTTGTAATCACGGT
AAACCAAACGTTATGGCTTTGGCTTATGATTTCGCGCAGGATCCATTAGA
TTGGGGCGGGTTTCCGAAGGAATTAAGACCTTATATTCCTAATAGCTACA
CGCGGCCTCGTTCGTTGCTGGGAAGTCCGGATCAATCAGCGTTGATGCAG
TCGGTGGTGCTGCTGACGACGACAGATGTGGAGGATGGGGAGGAGCTGTT
GTTGAATTATCGGTTGAATCCGAAGCATGGTAAGGAGAGCTTGCCATCTT
GGTATGTGCCCGTGGATGTGGAGGAGGACTCTCGACGGTGGGCGTGAAGA
GGATACAATTAGGAGGAAGGTGGGCGGCAGGGAAAAAGGACACGTACTTG
TGTAAGAGAAAAAGCACTTTGTTTCAATACAAATATGGAAGAGGGCAGGC
TCACCAGATACTATGGTGGAGTTTGGGCTCGTTTCAATGGGAAAGACACC
CAAAGCAAAAACTACCAACATATACACGCGTGG

protein sequence of jgi.p|Nanoce1779_2|584633

>mRNA_3118-protein ID=mRNA_3118-protein|Name=jgi.p|Nanoce1779_2|584633|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MSSFLSRLRQRVLRFSVRQRDLQEKADIETALLLTSWWNHIVLQGQEDRS
VLQQEAERVQQMAGFQQVRTLKENLDTQVLRMFKAIHAARKIQTDPAKLC
EIYGQSQKGSNDENDPTPQHPQHYQEVENWHPPKGARGRQQASMHSRGGT
GSREEYRGRADVDSVRKALRQQLGFTLRRGPSTIPMAGEGIFLEGRVRIG
TMVGLYPGLVYLQEHVRKPEEVAQLFPDPDMFLFQRYDRVMVDGRAAEEQ
QPNEYALAHLCNHGKPNVMALAYDFAQDPLDWGGFPKELRPYIPNSYTRP
RSLLGSPDQSALMQSVVLLTTTDVEDGEELLLNYRLNPKHGKESLPSWYV
PVDVEEDSRRWA*

mRNA from alignment at scaffold_7:702021..703572+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3118 ID=mRNA_3118|Name=jgi.p|Nanoce1779_2|584633|organism=Nannochloropsis oceanica|type=mRNA|length=1552bp|location=Sequence derived from alignment at scaffold_7:702021..703572+ (Nannochloropsis oceanica)
AGGGCCACATGTCATCCTTCCTGAGCCGGCTGCGGCAGAGAGTTTTGCGT
TTCAGTGTCCGGCAGCGGGACCTGCAGGTAAAAAGACAATATCTTGCGTT
CCCCCAGCCCATTTCAATACCCTCCCATGCTCAAGCGCTTGCACACATGC
AAGCAGAGGCTAATATGTGATTCAGAACGTGTCCTTGTTCTCTCTCCCCC
TGTACCAGAGTAAGCTATTCCAAACTCTCTCCGTCCCTCTGTCCCGCCTC
CACTCCATCACGGTGCCCTCCCTACCTCTCTGAAACCCTCCTCAATCAGA
AAGCGCCACACTTCCCAACTGCCCCACTTTTCACAATATCTCACAGGAAA
AAGCGGACATTGAAACCGCTTTGTTACTCACGTCATGGTGGAACCATATC
GTGCTACAAGGGCAAGAGGACCGAAGTGTGCTGCAGCAAGAAGCGGAGCG
TGTGCAACAAATGGCGGGCTTTCAGCAAGTGAGGACCCTCAAAGAAAACC
TCGACACCCAGGTCCTGCGCATGTTCAAGGCTATACACGCGGCGCGCAAG
ATTCAAACAGACCCAGCAAAACTATGTGAGATTTATGGACAAAGCCAGAA
AGGCAGCAACGACGAAAATGACCCCACCCCTCAACATCCCCAGCACTACC
AAGAAGTGGAAAATTGGCATCCACCCAAAGGCGCGCGGGGACGACAACAG
GCCTCCATGCATTCGCGTGGAGGAACTGGCAGCAGGGAAGAATACAGGGG
CCGTGCCGACGTGGATTCGGTGCGCAAGGCGTTGCGGCAGCAGTTGGGGT
TCACGCTCCGCCGAGGGCCCTCCACCATCCCCATGGCTGGGGAGGGCATT
TTCCTAGAGGGCCGCGTTCGGATTGGGACGATGGTGGGTTTATATCCCGG
CTTGGTTTATTTGCAAGAGCATGTGCGGAAGCCGGAGGAGGTTGCACAAC
TTTTCCCTGACCCGGACATGTTTTTGTTTCAGAGGTATGATAGGGTTATG
GTGGATGGACGGGCAGCAGAGGAGCAACAGCCGAATGAGTATGCCTTGGC
CCATCTTTGTAATCACGGTAAACCAAACGTTATGGCTTTGGCTTATGATT
TCGCGCAGGATCCATTAGATTGGGGCGGGTTTCCGAAGGAATTAAGACCT
TATATTCCTAATAGCTACACGCGGCCTCGTTCGTTGCTGGGAAGTCCGGA
TCAATCAGCGTTGATGCAGTCGGTGGTGCTGCTGACGACGACAGATGTGG
AGGATGGGGAGGAGCTGTTGTTGAATTATCGGTTGAATCCGAAGCATGGT
AAGGAGAGCTTGCCATCTTGGTATGTGCCCGTGGATGTGGAGGAGGACTC
TCGACGGTGGGCGTGAAGAGGATACAATTAGGAGGAAGGTGGGCGGCAGG
GAAAAAGGACACGTACTTGTGTAAGAGAAAAAGCACTTTGTTTCAATACA
AATATGGAAGAGGGCAGGCTCACCAGATACTATGGTGGAGTTTGGGCTCG
TTTCAATGGGAAAGACACCCAAAGCAAAAACTACCAACATATACACGCGT
GG

Coding sequence (CDS) from alignment at scaffold_7:702021..703572+

>mRNA_3118 ID=mRNA_3118|Name=jgi.p|Nanoce1779_2|584633|organism=Nannochloropsis oceanica|type=CDS|length=2178bp|location=Sequence derived from alignment at scaffold_7:702021..703572+ (Nannochloropsis oceanica)
ATGTCATCCTTCCTGAGCCGGCTGCGGCAGAGAGTTTTGCGTTTCAGTGT
CCGGCAGCGGGACCTGCAGGAAAAAGCGGACATTGAAACCGCTTTGTTAC
TCACGTCATGGTGGAACCATATCGTGCTACAAGGGCAAGAGGACCGAAGT
GTGCTGCAGCAAGAAGCGGAGCGTGTGCAACAAATGGCGGGCTTTCAGCA
AGTGAGGACCCTCAAAGAAAACCTCGACACCCAGGTCCTGCGCATGTTCA
AGGCTATACACGCGGCGCGCAAGATTCAAACAGACCCAGCAAAACTATGT
GAGATTTATGGACAAAGCCAGAAAGGCAGCAACGACGAAAATGACCCCAC
CCCTCAACATCCCCAGCACTACCAAGAAGTGGAAAATTGGCATCCACCCA
AAGGCGCGCGGGGACGACAACAGGCCTCCATGCATTCGCGTGGAGGAACT
GGCAGCAGGGAAGAATACAGGGGCCGTGCCGACGTGGATTCGGTGCGCAA
GGCGTTGCGGCAGCAGTTGGGGTTCACGCTCCGCCGAGGGCCCTCCACCA
TCCCCATGGCTGGGGAGGGCATTTTCCTAGAGGGCCGCGTTCGGATTGGG
ACGATGGTGGGTTTATATCCCGGCTTGGTTTATTTGCAAGAGCATGTGCG
GAAGCCGGAGGAGGTTGCACAACTTTTCCCTGACCCGGACATGTTTTTGT
TTCAGAGGTATGATAGGGTTATGGTGGATGGACGGGCAGCAGAGGAGCAA
CAGCCGAATGAGTATGCCTTGGCCCATCTTTGTAATCACGGTAAACCAAA
CGTTATGGCTTTGGCTTATGATTTCGCGCAGGATCCATTAGATTGGGGCG
GGTTTCCGAAGGAATTAAGACCTTATATTCCTAATAGCTACACGCGGCCT
CGTTCGTTGCTGGGAAGTCCGGATCAATCAGCGTTGATGCAGTCGGTGGT
GCTGCTGACGACGACAGATGTGGAGGATGGGGAGGAGCTGTTGTTGAATT
ATCGGTTGAATCCGAAGCATGGTAAGGAGAGCTTGCCATCTTGGTATGTG
CCCGTGGATGTGGAGGAGGACTCTCGACGGTGGGCGTGAATGTCATCCTT
CCTGAGCCGGCTGCGGCAGAGAGTTTTGCGTTTCAGTGTCCGGCAGCGGG
ACCTGCAGGAAAAAGCGGACATTGAAACCGCTTTGTTACTCACGTCATGG
TGGAACCATATCGTGCTACAAGGGCAAGAGGACCGAAGTGTGCTGCAGCA
AGAAGCGGAGCGTGTGCAACAAATGGCGGGCTTTCAGCAAGTGAGGACCC
TCAAAGAAAACCTCGACACCCAGGTCCTGCGCATGTTCAAGGCTATACAC
GCGGCGCGCAAGATTCAAACAGACCCAGCAAAACTATGTGAGATTTATGG
ACAAAGCCAGAAAGGCAGCAACGACGAAAATGACCCCACCCCTCAACATC
CCCAGCACTACCAAGAAGTGGAAAATTGGCATCCACCCAAAGGCGCGCGG
GGACGACAACAGGCCTCCATGCATTCGCGTGGAGGAACTGGCAGCAGGGA
AGAATACAGGGGCCGTGCCGACGTGGATTCGGTGCGCAAGGCGTTGCGGC
AGCAGTTGGGGTTCACGCTCCGCCGAGGGCCCTCCACCATCCCCATGGCT
GGGGAGGGCATTTTCCTAGAGGGCCGCGTTCGGATTGGGACGATGGTGGG
TTTATATCCCGGCTTGGTTTATTTGCAAGAGCATGTGCGGAAGCCGGAGG
AGGTTGCACAACTTTTCCCTGACCCGGACATGTTTTTGTTTCAGAGGTAT
GATAGGGTTATGGTGGATGGACGGGCAGCAGAGGAGCAACAGCCGAATGA
GTATGCCTTGGCCCATCTTTGTAATCACGGTAAACCAAACGTTATGGCTT
TGGCTTATGATTTCGCGCAGGATCCATTAGATTGGGGCGGGTTTCCGAAG
GAATTAAGACCTTATATTCCTAATAGCTACACGCGGCCTCGTTCGTTGCT
GGGAAGTCCGGATCAATCAGCGTTGATGCAGTCGGTGGTGCTGCTGACGA
CGACAGATGTGGAGGATGGGGAGGAGCTGTTGTTGAATTATCGGTTGAAT
CCGAAGCATGGTAAGGAGAGCTTGCCATCTTGGTATGTGCCCGTGGATGT
GGAGGAGGACTCTCGACGGTGGGCGTGA

Synonyms

Publications