jgi.p|Nanoce1779_2|584622, mRNA_3116 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584622
Unique NamemRNA_3116
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length481
Alignment locationscaffold_7:691837..692896 -

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Properties
Property NameValue
TranscriptId584708
TrackFilteredModels2
ProteinId584622
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:691837..692896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584622gene_3116Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584622mRNA_3116-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3116CDS_3116Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3116 ID=mRNA_3116|Name=jgi.p|Nanoce1779_2|584622|organism=Nannochloropsis oceanica|type=mRNA|length=481bp
AAATCAAAAGGGTAGCATCCAACATAATAGCTTCCCTATCAGAAGCCCCT
CGGTCAAATGTCGGCAGTGCTCGTGAACCCCAAGCCCTTCCTGCAAGGCC
TAACAGGCAAGCCAGTCTTCATCAAGCTTAAGTGGGGCATGGAGTACAAG
GGCATCCTTTTGTCTGTCGATAACTACTACAACGTGCAGCTGGCAGATAC
AGAGGAATGGATTGATGGAGCTATGATGGGAAATTTGGGGGAGGTGCTCA
TCAGATGCAACAACGTGTTGTACGTGCGGGGCGCGCCGGATGACGACATG
GACGCATAGAAGAGAAGGGTTGAGAAGAATGAAATTAAATAGCGCACAGA
GAGGAAAGAGATGAGAAAGTGGAGCGTAGAGTGTGGTGTGTACGCTTGGT
GTGTAAAAGGCCAAAAGAGGAAGAAATAAAGGCAACGACGGGGAGTTGAA
AAAAAACCCAAAAAGCCTTGCTGAGACACAA
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protein sequence of jgi.p|Nanoce1779_2|584622

>mRNA_3116-protein ID=mRNA_3116-protein|Name=jgi.p|Nanoce1779_2|584622|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MSAVLVNPKPFLQGLTGKPVFIKLKWGMEYKGILLSVDNYYNVQLADTEE
WIDGAMMGNLGEVLIRCNNVLYVRGAPDDDMDA*
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mRNA from alignment at scaffold_7:691837..692896-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3116 ID=mRNA_3116|Name=jgi.p|Nanoce1779_2|584622|organism=Nannochloropsis oceanica|type=mRNA|length=1060bp|location=Sequence derived from alignment at scaffold_7:691837..692896- (Nannochloropsis oceanica)
AAATCAAAAGGGTAGCATCCAACATAATAGCTTCCCTATCAGAAGCCCCT
CGGTCAAATGTCGGCAGTAAGTAGTGTAGCGGTGGATTTGGGACAGATTT
TAACAACAGACTATCCTCCCACGCTCACGCCTTCCGACTCCCCACTCGCA
CTCTATCACTTTATAGGTGCTCGTGAACCCCAAGCCCTTCCTGCAAGGCC
TAACAGGCAAGCCAGTCTTCATCAAGCTTAAGTGGGGCATGGAGTACAAG
GGTATGTCATGGTGTTTCTGGCTCTGTGAATGTACCTTTCCTTCTCCCTT
CCCTCCCATCTTAGCAGGACACCACCACCATCCTGCCAGTCGCCGGCGTA
TTATCTCACAGCTAATGCGATCAATGGTGCCATACCCTGCCGACATGCGT
GCATGTAATCGCCCTCTTTGTTCTTATCTGCACCTCCCCGCCGTGCTATG
AAGACCATCCTACTCAAATCAATTTGTTCCTTACCTTGTTTTCCCACGTT
AGGCATCCTTTTGTCTGTCGATAACTACTACAACGTGCAGCTGGCAGATA
CAGAGGAATGGATTGATGGAGCTATGATGGGAAATTTGGGGGAGGTGCTC
ATCAGGTATGAAGAACAGAAAGAAGGAAGACAGGAGAGGGAGACAGGGTG
AAAGGAGAAAGAGGAGACAGGGTGTAAGGAGAAAGAGGAGAGCAGGAGCA
GGAAGGGGAGGGTCGCTAAGGCAACGCTAAGTAAAAAGAATCGACGTCTC
ACCCCCTCCCTTTCCTGCTCGCTCACACTCAAACACATACCCACCCCTTC
CCACGAATATGAAAACGAATATAAACGTGATAGATGCAACAACGTGTTGT
ACGTGCGGGGCGCGCCGGATGACGACATGGACGCATAGAAGAGAAGGGTT
GAGAAGAATGAAATTAAATAGCGCACAGAGAGGAAAGAGATGAGAAAGTG
GAGCGTAGAGTGTGGTGTGTACGCTTGGTGTGTAAAAGGCCAAAAGAGGA
AGAAATAAAGGCAACGACGGGGAGTTGAAAAAAAACCCAAAAAGCCTTGC
TGAGACACAA
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Coding sequence (CDS) from alignment at scaffold_7:691837..692896-

>mRNA_3116 ID=mRNA_3116|Name=jgi.p|Nanoce1779_2|584622|organism=Nannochloropsis oceanica|type=CDS|length=1008bp|location=Sequence derived from alignment at scaffold_7:691837..692896- (Nannochloropsis oceanica)
ATGCAACAACGTGTTGTACGTGCGGGGCGCGCCGGATGACGACATGGACG
CATAGGCATCCTTTTGTCTGTCGATAACTACTACAACGTGCAGCTGGCAG
ATACAGAGGAATGGATTGATGGAGCTATGATGGGAAATTTGGGGGAGGTG
CTCATCAGGTGCTCGTGAACCCCAAGCCCTTCCTGCAAGGCCTAACAGGC
AAGCCAGTCTTCATCAAGCTTAAGTGGGGCATGGAGTACAAGGATGTCGG
CAATGCAACAACGTGTTGTACGTGCGGGGCGCGCCGGATGACGACATGGA
CGCATAGGCATCCTTTTGTCTGTCGATAACTACTACAACGTGCAGCTGGC
AGATACAGAGGAATGGATTGATGGAGCTATGATGGGAAATTTGGGGGAGG
TGCTCATCAGGTGCTCGTGAACCCCAAGCCCTTCCTGCAAGGCCTAACAG
GCAAGCCAGTCTTCATCAAGCTTAAGTGGGGCATGGAGTACAAGGATGTC
GGCAATGCAACAACGTGTTGTACGTGCGGGGCGCGCCGGATGACGACATG
GACGCATAGGCATCCTTTTGTCTGTCGATAACTACTACAACGTGCAGCTG
GCAGATACAGAGGAATGGATTGATGGAGCTATGATGGGAAATTTGGGGGA
GGTGCTCATCAGGTGCTCGTGAACCCCAAGCCCTTCCTGCAAGGCCTAAC
AGGCAAGCCAGTCTTCATCAAGCTTAAGTGGGGCATGGAGTACAAGGATG
TCGGCAATGCAACAACGTGTTGTACGTGCGGGGCGCGCCGGATGACGACA
TGGACGCATAGGCATCCTTTTGTCTGTCGATAACTACTACAACGTGCAGC
TGGCAGATACAGAGGAATGGATTGATGGAGCTATGATGGGAAATTTGGGG
GAGGTGCTCATCAGGTGCTCGTGAACCCCAAGCCCTTCCTGCAAGGCCTA
ACAGGCAAGCCAGTCTTCATCAAGCTTAAGTGGGGCATGGAGTACAAGGA
TGTCGGCA
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Synonyms
Publications