jgi.p|Nanoce1779_2|584616, mRNA_3115 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584616
Unique NamemRNA_3115
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length708
Alignment locationscaffold_7:690476..691804 +

Link to JBrowse

Properties
Property NameValue
TranscriptId584702
TrackFilteredModels2
ProteinId584616
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:690476..691804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584616gene_3115Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584616mRNA_3115-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3115CDS_3115Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3115 ID=mRNA_3115|Name=jgi.p|Nanoce1779_2|584616|organism=Nannochloropsis oceanica|type=mRNA|length=708bp
ACAGGCACACGACATTAGCTATGAGCAACAGAAGGCGACCTCGGCCCGTG
CAGGACGGGGATAATGAGGACGCGGGGGACGAGGACGAGGGGAACCAGCC
CGACTTGCTGGACGAGGACGAGCAGGCGAGGCTAATCGCAGAGCTGCGGC
GGAAAGGGGAGGAGCAAAGTCAGAGTACGCGGCGGCTATTCCAAGCACTG
TATGTTTTGTTGCTCCTGGCCTTCATCTACTGCACCGCGATGACACTGAC
CATGCCCTACTTCCTCGAGCACCAAGCCTTTTTCCAGTCTGCCGTCTCCC
CCTTCAGCTTTCTACTCACATATTTCGCAGACGTCCAGTGTGTCGTCGCG
GCGATTTCGGTGTTTGCGGGCCGACCAAACAAGACCCTCCTCTTCCTTGG
CTTCGGCGTTGGCGTTCTAAATCTCGTCGCGTGGCTCGGCGTCTTCTATC
AGTACACACCCTACCCCGCCATTGGTTTCTGGTGGCTCCCTGTCACTGCT
CTATTCGTCCTGGCCGTTTCCCTACATGTGGATAGGGACTTGCGGAGATT
GACGAAAGAGATTGATTTATTGGATAAGCTCAAGTATGATTATAAAAAGG
TTTGAGGGAGGCGGGACGAAGATACGCACGTGTGTGTACATAGACAAATA
AAGACAGCAAAATCGGCGTTAAATGCAGAAAGAAATAGTGGAAAGGTAGT
AAATCGTA
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protein sequence of jgi.p|Nanoce1779_2|584616

>mRNA_3115-protein ID=mRNA_3115-protein|Name=jgi.p|Nanoce1779_2|584616|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MSNRRRPRPVQDGDNEDAGDEDEGNQPDLLDEDEQARLIAELRRKGEEQS
QSTRRLFQALYVLLLLAFIYCTAMTLTMPYFLEHQAFFQSAVSPFSFLLT
YFADVQCVVAAISVFAGRPNKTLLFLGFGVGVLNLVAWLGVFYQYTPYPA
IGFWWLPVTALFVLAVSLHVDRDLRRLTKEIDLLDKLKYDYKKV*
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mRNA from alignment at scaffold_7:690476..691804+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3115 ID=mRNA_3115|Name=jgi.p|Nanoce1779_2|584616|organism=Nannochloropsis oceanica|type=mRNA|length=1329bp|location=Sequence derived from alignment at scaffold_7:690476..691804+ (Nannochloropsis oceanica)
ACAGGCACACGACATTAGCTATGAGCAACAGAAGGCGACCTCGGCCCGTG
CAGGACGGGGATAATGAGGACGCGGGGGACGAGGACGAGGGGAACCAGCC
CGACTTGCTGGACGAGGACGAGCAGGCGAGGCTAATCGCAGAGCTGCGGC
GGAAAGGGGAGGAGCAAAGTCAGAGTACGCGGGTAAGATGGGTGGTCGGA
TAGAAGGACGGTGGGAGGGGCAAAGCATTTGGTGAGAATGTGCTGCAGCT
GAGAGAGGATACGACAGGTCCGCACGCTATCCTTTTGTTCCATCGATTGT
CGGATGTCTACCTGAAAGGCAGGTAGATGGTAGTGGTAGAGAATTTTCTC
CACGCGAGATCAGGCTTAGATAGTCATAGTCCTACTATTTTCCTTCTTTC
CTTTCTCCCATCCTGCAGTTGCCTTTCCTTCTTCTGCGCTCATCTCCTTT
GCCATTTCTCCCTTGCCTACTTTCCCCTCACGCAGCGGCTATTCCAAGCA
CTGTATGTTTTGTTGCTCCTGGCCTTCATCTACTGCACCGCGATGACACT
GACCATGCCCTACTTCCTCGAGCACCAAGCCTTTTTCCAGTCTGCCGTCT
CCCCCTTCAGCTTTCTACTCACATATTTCGCAGACGTCCAGTGTGTCGTC
GCGGCGATTTCGGTGTTTGCGGTACGTTTATTGGAGCCTGGATGGATTGA
TTTGGATGATGTTGTCGGTTTTCAAACCTCGCTCCTAACCACCCTTTTCT
ATCTTTACACACAGGGCCGACCAAACAAGACCCTCCTCTTCCTTGGCTTC
GGCGTTGGCGTTCTAAATCTCGTCGCGTGGCTCGGGTATGGAAGTAAATG
TAAAATCCTATTTTACACGTCTTTTTTAAATGTTTTCTCTTGGTCTTGTT
CTTTGGTCTTGCTTTCTTGGTCGCTTCTTGCTGATCTTGTGCTGGTGCAA
GGAAACTTTAGACGGAAAAGAAAGGGAGGCCACCCACATCTCCCCGCCCC
ACACTAACATGCGGCACTTTGATCCCTTACTCCGCACCTTCATCACCCAT
ACGATTACAGCGTCTTCTATCAGTACACACCCTACCCCGCCATTGGTTTC
TGGTGGCTCCCTGTCACTGCTCTATTCGTCCTGGCCGTTTCCCTACATGT
GGATAGGGACTTGCGGAGATTGACGAAAGAGATTGATTTATTGGATAAGC
TCAAGTATGATTATAAAAAGGTTTGAGGGAGGCGGGACGAAGATACGCAC
GTGTGTGTACATAGACAAATAAAGACAGCAAAATCGGCGTTAAATGCAGA
AAGAAATAGTGGAAAGGTAGTAAATCGTA
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Coding sequence (CDS) from alignment at scaffold_7:690476..691804+

>mRNA_3115 ID=mRNA_3115|Name=jgi.p|Nanoce1779_2|584616|organism=Nannochloropsis oceanica|type=CDS|length=2340bp|location=Sequence derived from alignment at scaffold_7:690476..691804+ (Nannochloropsis oceanica)
ATGAGCAACAGAAGGCGACCTCGGCCCGTGCAGGACGGGGATAATGAGGA
CGCGGGGGACGAGGACGAGGGGAACCAGCCCGACTTGCTGGACGAGGACG
AGCAGGCGAGGCTAATCGCAGAGCTGCGGCGGAAAGGGGAGGAGCAAAGT
CAGAGTACGCGGCGGCTATTCCAAGCACTGTATGTTTTGTTGCTCCTGGC
CTTCATCTACTGCACCGCGATGACACTGACCATGCCCTACTTCCTCGAGC
ACCAAGCCTTTTTCCAGTCTGCCGTCTCCCCCTTCAGCTTTCTACTCACA
TATTTCGCAGACGTCCAGTGTGTCGTCGCGGCGATTTCGGTGTTTGCGGG
CCGACCAAACAAGACCCTCCTCTTCCTTGGCTTCGGCGTTGGCGTTCTAA
ATCTCGTCGCGTGGCTCGGCGTCTTCTATCAGTACACACCCTACCCCGCC
ATTGGTTTCTGGTGGCTCCCTGTCACTGCTCTATTCGTCCTGGCCGTTTC
CCTACATGTGGATAGGGACTTGCGGAGATTGACGAAAGAGATTGATTTAT
TGGATAAGCTCAAGTATGATTATAAAAAGGTTTGAATGAGCAACAGAAGG
CGACCTCGGCCCGTGCAGGACGGGGATAATGAGGACGCGGGGGACGAGGA
CGAGGGGAACCAGCCCGACTTGCTGGACGAGGACGAGCAGGCGAGGCTAA
TCGCAGAGCTGCGGCGGAAAGGGGAGGAGCAAAGTCAGAGTACGCGGCGG
CTATTCCAAGCACTGTATGTTTTGTTGCTCCTGGCCTTCATCTACTGCAC
CGCGATGACACTGACCATGCCCTACTTCCTCGAGCACCAAGCCTTTTTCC
AGTCTGCCGTCTCCCCCTTCAGCTTTCTACTCACATATTTCGCAGACGTC
CAGTGTGTCGTCGCGGCGATTTCGGTGTTTGCGGGCCGACCAAACAAGAC
CCTCCTCTTCCTTGGCTTCGGCGTTGGCGTTCTAAATCTCGTCGCGTGGC
TCGGCGTCTTCTATCAGTACACACCCTACCCCGCCATTGGTTTCTGGTGG
CTCCCTGTCACTGCTCTATTCGTCCTGGCCGTTTCCCTACATGTGGATAG
GGACTTGCGGAGATTGACGAAAGAGATTGATTTATTGGATAAGCTCAAGT
ATGATTATAAAAAGGTTTGAATGAGCAACAGAAGGCGACCTCGGCCCGTG
CAGGACGGGGATAATGAGGACGCGGGGGACGAGGACGAGGGGAACCAGCC
CGACTTGCTGGACGAGGACGAGCAGGCGAGGCTAATCGCAGAGCTGCGGC
GGAAAGGGGAGGAGCAAAGTCAGAGTACGCGGCGGCTATTCCAAGCACTG
TATGTTTTGTTGCTCCTGGCCTTCATCTACTGCACCGCGATGACACTGAC
CATGCCCTACTTCCTCGAGCACCAAGCCTTTTTCCAGTCTGCCGTCTCCC
CCTTCAGCTTTCTACTCACATATTTCGCAGACGTCCAGTGTGTCGTCGCG
GCGATTTCGGTGTTTGCGGGCCGACCAAACAAGACCCTCCTCTTCCTTGG
CTTCGGCGTTGGCGTTCTAAATCTCGTCGCGTGGCTCGGCGTCTTCTATC
AGTACACACCCTACCCCGCCATTGGTTTCTGGTGGCTCCCTGTCACTGCT
CTATTCGTCCTGGCCGTTTCCCTACATGTGGATAGGGACTTGCGGAGATT
GACGAAAGAGATTGATTTATTGGATAAGCTCAAGTATGATTATAAAAAGG
TTTGAATGAGCAACAGAAGGCGACCTCGGCCCGTGCAGGACGGGGATAAT
GAGGACGCGGGGGACGAGGACGAGGGGAACCAGCCCGACTTGCTGGACGA
GGACGAGCAGGCGAGGCTAATCGCAGAGCTGCGGCGGAAAGGGGAGGAGC
AAAGTCAGAGTACGCGGCGGCTATTCCAAGCACTGTATGTTTTGTTGCTC
CTGGCCTTCATCTACTGCACCGCGATGACACTGACCATGCCCTACTTCCT
CGAGCACCAAGCCTTTTTCCAGTCTGCCGTCTCCCCCTTCAGCTTTCTAC
TCACATATTTCGCAGACGTCCAGTGTGTCGTCGCGGCGATTTCGGTGTTT
GCGGGCCGACCAAACAAGACCCTCCTCTTCCTTGGCTTCGGCGTTGGCGT
TCTAAATCTCGTCGCGTGGCTCGGCGTCTTCTATCAGTACACACCCTACC
CCGCCATTGGTTTCTGGTGGCTCCCTGTCACTGCTCTATTCGTCCTGGCC
GTTTCCCTACATGTGGATAGGGACTTGCGGAGATTGACGAAAGAGATTGA
TTTATTGGATAAGCTCAAGTATGATTATAAAAAGGTTTGA
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Synonyms
Publications