jgi.p|Nanoce1779_2|584613, mRNA_3114 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584613
Unique NamemRNA_3114
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2276
Alignment locationscaffold_7:687657..689932 -

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Properties
Property NameValue
TranscriptId584699
TrackFilteredModels2
ProteinId584613
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:687657..689932 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584613gene_3114Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584613mRNA_3114-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3114CDS_3114Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3114 ID=mRNA_3114|Name=jgi.p|Nanoce1779_2|584613|organism=Nannochloropsis oceanica|type=mRNA|length=2276bp
ACAGAATATGCCGTTGGACGGCCCCTCTCGTAGGGTATGGCACTACTGCC
CCGATCTCTGGTGCCATCGCAGGGGGCCCTTCATCCGTTGTTCAGTCGTA
GGACTAGCCGTCGCCATGTGCATCCTGCATCTCCACATTTACATGGATCC
CACATTATCCCGAACCGGGACCCAAGCTCGAGAGAGCAGCCCTGGCAATA
TAGAACAGCAACCAGTCGACAACAGCTTTGCCGCGACCAACGGGCTTAAG
GCACATGCTCCACCTGTTCCGTCGCGAAAGCAAGAAGATGGAGAGGACCT
GTTGTCCCTCGCCAACCCCTACGCCGGCCGCGATAATCCTTTTGCAGCGC
GCACGGACCGCGACAAGACCAGGAAGAAAAATGTGCTATTCATCATGACG
GATGATCTGCGTCCTTCATTGAGCGTGTACGACAAACCAGTGATCTCCCC
TGGGATCGAGCGCCTGGCCAAGGGCGGGGTGGTGTTTGAACGGAACTACA
ATCAAGACCCCATCTGCAACCCCTCGCGCGACTCCATGCTTTCTGGGAGG
AGACCCGATACGACACAGACGTGGTTATTTGAGAGTATAGTACCGCACAA
GTACAGTAACATCTTCAGATATTTCAAGGAAGAGGGCGGGTACAAAGTGT
TGGGGACGGGGAAGCTCTGGCATTGGACGTCGACATATCTGGATGATTTT
CACAATGATTATTTCCCTCCAAACTCCGATGATTGGAATAGTGGCACAGA
CGAGAATTATAGCATGATGAATGCATCTGTCCAACCGGACAAAAATTGGC
CAGAAGAGCGGTATTGGGACTTTCGTATCGCTTCGGAAGGGATCTCACTC
ATGCAAGGCGCCGCTGACACCATTGACACCCAGCCCTTTTTCTTGGGTGT
CGGCTTCCATCAACCGCACCGCCCTTGGCACATGCCCCAGAAATACTGGG
ATTTATATGACAAAGTGCCCGTGCCCGTGACCCCCCATTCAACCTGGCCT
GTTGATGCCCCTGTGGTAGCAACGGGGGATATCAACCCTGCTGAAATCGG
CATGTTGCCTGATTCATCGAAAAGGTATTTGGCGAACCCGGACGGAGGTA
TTCCTGAAGATGCCATTCGGGAGAATGTAAGGGGATATCATGCTTCAATT
TCATTTCTAGATCATCAGATTCAACGCTTGCTAGACGAGATGGAACGGTT
GAAATTGGTAGAGGACACGATTATTGTTTTTTGTGTAGACCATGGGATGA
ACATTGGGGATCACGGGATGTGGGATAAACGGACATTGTTTGAAACCAAT
GCGAGAGTCCCTCTTATCATTCGGGATCCGGACTTCCCAGAAAGTTTTGG
GACGAATGCCTCGGCCCTGGCTGAAAATGTGGATATTTTCCCAACGTTGA
TTGAAATGGCTGGCTTGCCTGACCCTGCTGGGCGATTGTTTCCGCCGTTG
GAAGGAAAAAGTCTGGTTCCTATTTTAGCGGATCCGGCCATGGGGTCTGT
AAAGGATTTCGCGATGACTCAGATTGCGCGTTGTTGTAGTTCAGGATGCG
GGAGTGAGAAGGTGGAGAAGGTGAACTATCTGAAGTGGGAGGTGTGTAAG
GGAGGAAATTGGGAGTGGAACGAACTTAATGAGCGGGTATACATGGGATA
CTCGATGCGGACGGATGAGTGGCGGTATACTGTGTGGGTGCCTTTTGATG
CGCCATCGCGTGCGCCGCAGTGGGGGCAACCCTTGGGAGGGGAAGAATTG
TATGATCATCGGGATCCACGGTGTAATGAGAAGGGTAACTTTGATATGTG
TGAGACAAGGAATGTTGCGAAGGATGCGTCTTTGAAGAAGATTAAGGCAG
AGTTGTTCATGAAATTGAGGAGTATTGTTGACGAGAACAATTTGAAGCAT
TGGAAGGATGAGTGGGAGAAGGAGGAAGGGTTAAGAAAGACGAAGAATGA
GAAGTAGAGGTTTAGGCGTGATGATAGTTGTGTATCGTAATGGACTTTTG
GTGAATATAAAGAAGAGAAGGAAGCCATAGCGCGCATGTAAGCTACCAAC
ATTTAAATACAATTCTCTGAGTGCAATAAGCAGAGAGGAAGTGTGTGTGT
GTGTGTGTGATCGAGGGAGGAGACAGTGTGCTCGCAAAGTCTAAGGGTTT
AGAAAAAACACAAATTTCGTCAATTTCTTGCCATTTCCCCCTTTTCCAGT
CTTAGAAATATATCTATCTGGAGCAGTTACCCTCCCAACAACAATAATAC
ACCAAAATTAATTATGTTATACTTAC
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protein sequence of jgi.p|Nanoce1779_2|584613

>mRNA_3114-protein ID=mRNA_3114-protein|Name=jgi.p|Nanoce1779_2|584613|organism=Nannochloropsis oceanica|type=polypeptide|length=650bp
MPLDGPSRRVWHYCPDLWCHRRGPFIRCSVVGLAVAMCILHLHIYMDPTL
SRTGTQARESSPGNIEQQPVDNSFAATNGLKAHAPPVPSRKQEDGEDLLS
LANPYAGRDNPFAARTDRDKTRKKNVLFIMTDDLRPSLSVYDKPVISPGI
ERLAKGGVVFERNYNQDPICNPSRDSMLSGRRPDTTQTWLFESIVPHKYS
NIFRYFKEEGGYKVLGTGKLWHWTSTYLDDFHNDYFPPNSDDWNSGTDEN
YSMMNASVQPDKNWPEERYWDFRIASEGISLMQGAADTIDTQPFFLGVGF
HQPHRPWHMPQKYWDLYDKVPVPVTPHSTWPVDAPVVATGDINPAEIGML
PDSSKRYLANPDGGIPEDAIRENVRGYHASISFLDHQIQRLLDEMERLKL
VEDTIIVFCVDHGMNIGDHGMWDKRTLFETNARVPLIIRDPDFPESFGTN
ASALAENVDIFPTLIEMAGLPDPAGRLFPPLEGKSLVPILADPAMGSVKD
FAMTQIARCCSSGCGSEKVEKVNYLKWEVCKGGNWEWNELNERVYMGYSM
RTDEWRYTVWVPFDAPSRAPQWGQPLGGEELYDHRDPRCNEKGNFDMCET
RNVAKDASLKKIKAELFMKLRSIVDENNLKHWKDEWEKEEGLRKTKNEK*
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mRNA from alignment at scaffold_7:687657..689932-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3114 ID=mRNA_3114|Name=jgi.p|Nanoce1779_2|584613|organism=Nannochloropsis oceanica|type=mRNA|length=2276bp|location=Sequence derived from alignment at scaffold_7:687657..689932- (Nannochloropsis oceanica)
ACAGAATATGCCGTTGGACGGCCCCTCTCGTAGGGTATGGCACTACTGCC
CCGATCTCTGGTGCCATCGCAGGGGGCCCTTCATCCGTTGTTCAGTCGTA
GGACTAGCCGTCGCCATGTGCATCCTGCATCTCCACATTTACATGGATCC
CACATTATCCCGAACCGGGACCCAAGCTCGAGAGAGCAGCCCTGGCAATA
TAGAACAGCAACCAGTCGACAACAGCTTTGCCGCGACCAACGGGCTTAAG
GCACATGCTCCACCTGTTCCGTCGCGAAAGCAAGAAGATGGAGAGGACCT
GTTGTCCCTCGCCAACCCCTACGCCGGCCGCGATAATCCTTTTGCAGCGC
GCACGGACCGCGACAAGACCAGGAAGAAAAATGTGCTATTCATCATGACG
GATGATCTGCGTCCTTCATTGAGCGTGTACGACAAACCAGTGATCTCCCC
TGGGATCGAGCGCCTGGCCAAGGGCGGGGTGGTGTTTGAACGGAACTACA
ATCAAGACCCCATCTGCAACCCCTCGCGCGACTCCATGCTTTCTGGGAGG
AGACCCGATACGACACAGACGTGGTTATTTGAGAGTATAGTACCGCACAA
GTACAGTAACATCTTCAGATATTTCAAGGAAGAGGGCGGGTACAAAGTGT
TGGGGACGGGGAAGCTCTGGCATTGGACGTCGACATATCTGGATGATTTT
CACAATGATTATTTCCCTCCAAACTCCGATGATTGGAATAGTGGCACAGA
CGAGAATTATAGCATGATGAATGCATCTGTCCAACCGGACAAAAATTGGC
CAGAAGAGCGGTATTGGGACTTTCGTATCGCTTCGGAAGGGATCTCACTC
ATGCAAGGCGCCGCTGACACCATTGACACCCAGCCCTTTTTCTTGGGTGT
CGGCTTCCATCAACCGCACCGCCCTTGGCACATGCCCCAGAAATACTGGG
ATTTATATGACAAAGTGCCCGTGCCCGTGACCCCCCATTCAACCTGGCCT
GTTGATGCCCCTGTGGTAGCAACGGGGGATATCAACCCTGCTGAAATCGG
CATGTTGCCTGATTCATCGAAAAGGTATTTGGCGAACCCGGACGGAGGTA
TTCCTGAAGATGCCATTCGGGAGAATGTAAGGGGATATCATGCTTCAATT
TCATTTCTAGATCATCAGATTCAACGCTTGCTAGACGAGATGGAACGGTT
GAAATTGGTAGAGGACACGATTATTGTTTTTTGTGTAGACCATGGGATGA
ACATTGGGGATCACGGGATGTGGGATAAACGGACATTGTTTGAAACCAAT
GCGAGAGTCCCTCTTATCATTCGGGATCCGGACTTCCCAGAAAGTTTTGG
GACGAATGCCTCGGCCCTGGCTGAAAATGTGGATATTTTCCCAACGTTGA
TTGAAATGGCTGGCTTGCCTGACCCTGCTGGGCGATTGTTTCCGCCGTTG
GAAGGAAAAAGTCTGGTTCCTATTTTAGCGGATCCGGCCATGGGGTCTGT
AAAGGATTTCGCGATGACTCAGATTGCGCGTTGTTGTAGTTCAGGATGCG
GGAGTGAGAAGGTGGAGAAGGTGAACTATCTGAAGTGGGAGGTGTGTAAG
GGAGGAAATTGGGAGTGGAACGAACTTAATGAGCGGGTATACATGGGATA
CTCGATGCGGACGGATGAGTGGCGGTATACTGTGTGGGTGCCTTTTGATG
CGCCATCGCGTGCGCCGCAGTGGGGGCAACCCTTGGGAGGGGAAGAATTG
TATGATCATCGGGATCCACGGTGTAATGAGAAGGGTAACTTTGATATGTG
TGAGACAAGGAATGTTGCGAAGGATGCGTCTTTGAAGAAGATTAAGGCAG
AGTTGTTCATGAAATTGAGGAGTATTGTTGACGAGAACAATTTGAAGCAT
TGGAAGGATGAGTGGGAGAAGGAGGAAGGGTTAAGAAAGACGAAGAATGA
GAAGTAGAGGTTTAGGCGTGATGATAGTTGTGTATCGTAATGGACTTTTG
GTGAATATAAAGAAGAGAAGGAAGCCATAGCGCGCATGTAAGCTACCAAC
ATTTAAATACAATTCTCTGAGTGCAATAAGCAGAGAGGAAGTGTGTGTGT
GTGTGTGTGATCGAGGGAGGAGACAGTGTGCTCGCAAAGTCTAAGGGTTT
AGAAAAAACACAAATTTCGTCAATTTCTTGCCATTTCCCCCTTTTCCAGT
CTTAGAAATATATCTATCTGGAGCAGTTACCCTCCCAACAACAATAATAC
ACCAAAATTAATTATGTTATACTTAC
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Coding sequence (CDS) from alignment at scaffold_7:687657..689932-

>mRNA_3114 ID=mRNA_3114|Name=jgi.p|Nanoce1779_2|584613|organism=Nannochloropsis oceanica|type=CDS|length=1950bp|location=Sequence derived from alignment at scaffold_7:687657..689932- (Nannochloropsis oceanica)
ATGCCGTTGGACGGCCCCTCTCGTAGGGTATGGCACTACTGCCCCGATCT
CTGGTGCCATCGCAGGGGGCCCTTCATCCGTTGTTCAGTCGTAGGACTAG
CCGTCGCCATGTGCATCCTGCATCTCCACATTTACATGGATCCCACATTA
TCCCGAACCGGGACCCAAGCTCGAGAGAGCAGCCCTGGCAATATAGAACA
GCAACCAGTCGACAACAGCTTTGCCGCGACCAACGGGCTTAAGGCACATG
CTCCACCTGTTCCGTCGCGAAAGCAAGAAGATGGAGAGGACCTGTTGTCC
CTCGCCAACCCCTACGCCGGCCGCGATAATCCTTTTGCAGCGCGCACGGA
CCGCGACAAGACCAGGAAGAAAAATGTGCTATTCATCATGACGGATGATC
TGCGTCCTTCATTGAGCGTGTACGACAAACCAGTGATCTCCCCTGGGATC
GAGCGCCTGGCCAAGGGCGGGGTGGTGTTTGAACGGAACTACAATCAAGA
CCCCATCTGCAACCCCTCGCGCGACTCCATGCTTTCTGGGAGGAGACCCG
ATACGACACAGACGTGGTTATTTGAGAGTATAGTACCGCACAAGTACAGT
AACATCTTCAGATATTTCAAGGAAGAGGGCGGGTACAAAGTGTTGGGGAC
GGGGAAGCTCTGGCATTGGACGTCGACATATCTGGATGATTTTCACAATG
ATTATTTCCCTCCAAACTCCGATGATTGGAATAGTGGCACAGACGAGAAT
TATAGCATGATGAATGCATCTGTCCAACCGGACAAAAATTGGCCAGAAGA
GCGGTATTGGGACTTTCGTATCGCTTCGGAAGGGATCTCACTCATGCAAG
GCGCCGCTGACACCATTGACACCCAGCCCTTTTTCTTGGGTGTCGGCTTC
CATCAACCGCACCGCCCTTGGCACATGCCCCAGAAATACTGGGATTTATA
TGACAAAGTGCCCGTGCCCGTGACCCCCCATTCAACCTGGCCTGTTGATG
CCCCTGTGGTAGCAACGGGGGATATCAACCCTGCTGAAATCGGCATGTTG
CCTGATTCATCGAAAAGGTATTTGGCGAACCCGGACGGAGGTATTCCTGA
AGATGCCATTCGGGAGAATGTAAGGGGATATCATGCTTCAATTTCATTTC
TAGATCATCAGATTCAACGCTTGCTAGACGAGATGGAACGGTTGAAATTG
GTAGAGGACACGATTATTGTTTTTTGTGTAGACCATGGGATGAACATTGG
GGATCACGGGATGTGGGATAAACGGACATTGTTTGAAACCAATGCGAGAG
TCCCTCTTATCATTCGGGATCCGGACTTCCCAGAAAGTTTTGGGACGAAT
GCCTCGGCCCTGGCTGAAAATGTGGATATTTTCCCAACGTTGATTGAAAT
GGCTGGCTTGCCTGACCCTGCTGGGCGATTGTTTCCGCCGTTGGAAGGAA
AAAGTCTGGTTCCTATTTTAGCGGATCCGGCCATGGGGTCTGTAAAGGAT
TTCGCGATGACTCAGATTGCGCGTTGTTGTAGTTCAGGATGCGGGAGTGA
GAAGGTGGAGAAGGTGAACTATCTGAAGTGGGAGGTGTGTAAGGGAGGAA
ATTGGGAGTGGAACGAACTTAATGAGCGGGTATACATGGGATACTCGATG
CGGACGGATGAGTGGCGGTATACTGTGTGGGTGCCTTTTGATGCGCCATC
GCGTGCGCCGCAGTGGGGGCAACCCTTGGGAGGGGAAGAATTGTATGATC
ATCGGGATCCACGGTGTAATGAGAAGGGTAACTTTGATATGTGTGAGACA
AGGAATGTTGCGAAGGATGCGTCTTTGAAGAAGATTAAGGCAGAGTTGTT
CATGAAATTGAGGAGTATTGTTGACGAGAACAATTTGAAGCATTGGAAGG
ATGAGTGGGAGAAGGAGGAAGGGTTAAGAAAGACGAAGAATGAGAAGTAG
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Synonyms
Publications