jgi.p|Nanoce1779_2|584606, mRNA_3113 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584606
Unique Name	mRNA_3113
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	695
Alignment location	scaffold_7:685920..687611 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584692
Track	FilteredModels2
ProteinId	584606

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:685920..687611 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584606	gene_3113	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584606	mRNA_3113-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3113	CDS_3113	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:685920..687611+
coding sequence from alignment at scaffold_7:685920..687611+

mRNA sequence

>mRNA_3113 ID=mRNA_3113|Name=jgi.p|Nanoce1779_2|584606|organism=Nannochloropsis oceanica|type=mRNA|length=695bp
TCCATCCTCCACAACGCACAGGCACACAACCCAGCTAAACCGCAGCTAAA
TTACCTCCCCTCCCTTCGTCGTCATCTTTGTATCTAAAGGCTTCAGTCGC
GCGTTCCGCTACACTCCTTTCTTCTCAATTTAGCCACAATGTCACACAAC
CTCTTTGACGACACCTTTGTCATAACAAGCCTAAACCCGCACAAGAAGCG
CTTTGCTCGAGTTGATCGATTGGTGGGCAAGAGCACGCTGTTCGAGATGG
ACTTGTTGCTAGATATTAATAGCGAGATTTATACCGTCAAGCAAGGCGAC
GAGATTGCGCTAATGTTGACGCACACGCCGTACAGCGACGGAAAGCCTGA
TCCAAAAGAGTACCAGCACGACATGTCGTCAACGCTTATGGACCAGTACG
ACTACGTTACATACGGCAAGGTCTTCAAGATTGAATCAGTGGCATCAGGC
GGGGTAGCAGGAGGAAATAAAGAACCCAAGGTGGCCATCATGATTTCGTT
CGGTGGCCTGCTTATGAAGCTTTCAGGGGATCAAAAGCACGTGGCTCGAA
TTTCTATCGACAGTCCCATCTACTGCTTCGTCCGCAAGACTAAGACTAAC
AGAGCAAGTTAAGGAAGGAGGGAGAGATTCGACATCTCCATATACATAGT
CCAAAACAAAAAGAAACAAATTTGGAAAGTCAGGTTTTAAGAAAA

protein sequence of jgi.p|Nanoce1779_2|584606

>mRNA_3113-protein ID=mRNA_3113-protein|Name=jgi.p|Nanoce1779_2|584606|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MSHNLFDDTFVITSLNPHKKRFARVDRLVGKSTLFEMDLLLDINSEIYTV
KQGDEIALMLTHTPYSDGKPDPKEYQHDMSSTLMDQYDYVTYGKVFKIES
VASGGVAGGNKEPKVAIMISFGGLLMKLSGDQKHVARISIDSPIYCFVRK
TKTNRAS*

mRNA from alignment at scaffold_7:685920..687611+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3113 ID=mRNA_3113|Name=jgi.p|Nanoce1779_2|584606|organism=Nannochloropsis oceanica|type=mRNA|length=1692bp|location=Sequence derived from alignment at scaffold_7:685920..687611+ (Nannochloropsis oceanica)
TCCATCCTCCACAACGCACAGGCACACAACCCAGCTAAACCGCAGCTAAA
TTACCTCCCCTCCCTTCGTCGTCATCTTTGTATCTAAAGGCTTCAGTCGC
GCGTTCCGCTACACTCCTTTCTTCTCAATTTAGCCACAATGTCACACAAC
CTCTTTGACGACACCTTTGTCATAACAAGCCTAAACCCGCACAAGAAGCG
CTTTGCTCGAGGTAAGGAGGACAAGGGCACAGAAACGGCACAGGGGCTGA
GAGGAGGCTGGTGAGAGGGTAGGGCTGGGAGGAGAGCTCGTTGCACACTG
TTCTCTGTGAGCCGAGCATTACCATGAGACTGTGCCAAGTGATGGCGGAG
ATGAAAGTGTGTTTAGTTCGATGGCTCTACGAAGCTATCAGGGCATCACG
CGGTACGGGAGGCGAGAAATGGGACAATTTTCTCCAAACACCCACGCACT
AATACCTCGCGAACATATGGACAGTTGATCGATTGGTGGGCAAGAGCACG
CTGTTCGAGATGGACTTGTTGCTAGGTGAGGAAATTTTGTTGAGATTTGC
GGGTGGTAGTATGGGGGACCGGCGAGTCAGTTTTTTCTTGTATCCTTCCT
TAGTTATGCCTCTTCTTTCCCCCATCCGCCTACGTAAACAATATGCACAG
ATATTAATAGCGAGATTTATACCGTCAAGCAAGGCGACGAGATTGCGCTA
ATGTTGACGCAGTAAGTGCAAGGATAAGTGGAGAAAGAGACTGGAGGTGT
CAATTTGTGAGACTTTTTGTTGAAGTATTTTGTTGTTTTTTTAGGGGGTC
CCAAGAGTAGCCTTCAGACTTCAATATTCCTGCCGATCTTTGTCTGTCAT
TGAATGTCCTCACTCTGTATAATTTGCTTCGTTTTCCAGCTTTCTCCGCC
CTTCATTTTGACACATTCACTCATCCATACCCCCGGCTCCGTTTTCTCAT
TTCTCTCCCGCTAAACAGCACGCCGTACAGCGACGGAAAGCCTGATCCAA
AAGAGTACCAGCACGACATGTCGGTACGTTTTTCGTGTGCTTTATTATCT
GTAGACAGCCGGAGCGGGCCATTTTAGGTTGGTCCAGAACAGAGCAAGGA
GAAAGGAGGGTTTCTTACGTCTCTTGAATCATTCTTTTCCTTTCTTTTTT
CCAGTCAACGCTTATGGACCAGTACGACTACGTTACATACGGCAAGGTCT
TCAAGATTGAATCAGTGGCATCAGGCGGGGTAGCAGGAGGAAATAAAGAA
CCCAAGGTGGCCATCATGATTTCGTTCGGTGGCCTGCTTATGAAGCTTTC
AGGGGATCAAAAGTAAGACGATAACTTGCGTGCGTGGTAGCTGGAAATGA
GGATGGGTTGCGTGTGTGTAAACTTGGGGTTGATTTGCTACGGTGACTTC
CAGGAGAAACAAGGCGGAATTGTCGTGTCGAACGGTCGTTTTTGCCGATA
GCATGTCCAAAGGGACACTTTCAATTTCGATTTTTTGTTTTTCTCACACG
TACATCACACGCACACACACCTTTGTACAATAGGCACGTGGCTCGAATTT
CTATCGACAGTCCCATCTACTGCTTCGTCCGCAAGACTAAGACTAACAGA
GCAAGTTAAGGAAGGAGGGAGAGATTCGACATCTCCATATACATAGTCCA
AAACAAAAAGAAACAAATTTGGAAAGTCAGGTTTTAAGAAAA

Coding sequence (CDS) from alignment at scaffold_7:685920..687611+

>mRNA_3113 ID=mRNA_3113|Name=jgi.p|Nanoce1779_2|584606|organism=Nannochloropsis oceanica|type=CDS|length=2844bp|location=Sequence derived from alignment at scaffold_7:685920..687611+ (Nannochloropsis oceanica)
ATGTCACACAACCTCTTTGACGACACCTTTGTCATAACAAGCCTAAACCC
GCACAAGAAGCGCTTTGCTCGAGTTGATCGATTGGTGGGCAAGAGCACGC
TGTTCGAGATGGACTTGTTGCTAGATATTAATAGCGAGATTTATACCGTC
AAGCAAGGCGACGAGATTGCGCTAATGTTGACGCACACGCCGTACAGCGA
CGGAAAGCCTGATCCAAAAGAGTACCAGCACGACATGTCGTCAACGCTTA
TGGACCAGTACGACTACGTTACATACGGCAAGGTCTTCAAGATTGAATCA
GTGGCATCAGGCGGGGTAGCAGGAGGAAATAAAGAACCCAAGGTGGCCAT
CATGATTTCGTTCGGTGGCCTGCTTATGAAGCTTTCAGGGGATCAAAAGC
ACGTGGCTCGAATTTCTATCGACAGTCCCATCTACTGCTTCGTCCGCAAG
ACTAAGACTAACAGAGCAAGTTAAATGTCACACAACCTCTTTGACGACAC
CTTTGTCATAACAAGCCTAAACCCGCACAAGAAGCGCTTTGCTCGAGTTG
ATCGATTGGTGGGCAAGAGCACGCTGTTCGAGATGGACTTGTTGCTAGAT
ATTAATAGCGAGATTTATACCGTCAAGCAAGGCGACGAGATTGCGCTAAT
GTTGACGCACACGCCGTACAGCGACGGAAAGCCTGATCCAAAAGAGTACC
AGCACGACATGTCGTCAACGCTTATGGACCAGTACGACTACGTTACATAC
GGCAAGGTCTTCAAGATTGAATCAGTGGCATCAGGCGGGGTAGCAGGAGG
AAATAAAGAACCCAAGGTGGCCATCATGATTTCGTTCGGTGGCCTGCTTA
TGAAGCTTTCAGGGGATCAAAAGCACGTGGCTCGAATTTCTATCGACAGT
CCCATCTACTGCTTCGTCCGCAAGACTAAGACTAACAGAGCAAGTTAAAT
GTCACACAACCTCTTTGACGACACCTTTGTCATAACAAGCCTAAACCCGC
ACAAGAAGCGCTTTGCTCGAGTTGATCGATTGGTGGGCAAGAGCACGCTG
TTCGAGATGGACTTGTTGCTAGATATTAATAGCGAGATTTATACCGTCAA
GCAAGGCGACGAGATTGCGCTAATGTTGACGCACACGCCGTACAGCGACG
GAAAGCCTGATCCAAAAGAGTACCAGCACGACATGTCGTCAACGCTTATG
GACCAGTACGACTACGTTACATACGGCAAGGTCTTCAAGATTGAATCAGT
GGCATCAGGCGGGGTAGCAGGAGGAAATAAAGAACCCAAGGTGGCCATCA
TGATTTCGTTCGGTGGCCTGCTTATGAAGCTTTCAGGGGATCAAAAGCAC
GTGGCTCGAATTTCTATCGACAGTCCCATCTACTGCTTCGTCCGCAAGAC
TAAGACTAACAGAGCAAGTTAAATGTCACACAACCTCTTTGACGACACCT
TTGTCATAACAAGCCTAAACCCGCACAAGAAGCGCTTTGCTCGAGTTGAT
CGATTGGTGGGCAAGAGCACGCTGTTCGAGATGGACTTGTTGCTAGATAT
TAATAGCGAGATTTATACCGTCAAGCAAGGCGACGAGATTGCGCTAATGT
TGACGCACACGCCGTACAGCGACGGAAAGCCTGATCCAAAAGAGTACCAG
CACGACATGTCGTCAACGCTTATGGACCAGTACGACTACGTTACATACGG
CAAGGTCTTCAAGATTGAATCAGTGGCATCAGGCGGGGTAGCAGGAGGAA
ATAAAGAACCCAAGGTGGCCATCATGATTTCGTTCGGTGGCCTGCTTATG
AAGCTTTCAGGGGATCAAAAGCACGTGGCTCGAATTTCTATCGACAGTCC
CATCTACTGCTTCGTCCGCAAGACTAAGACTAACAGAGCAAGTTAAATGT
CACACAACCTCTTTGACGACACCTTTGTCATAACAAGCCTAAACCCGCAC
AAGAAGCGCTTTGCTCGAGTTGATCGATTGGTGGGCAAGAGCACGCTGTT
CGAGATGGACTTGTTGCTAGATATTAATAGCGAGATTTATACCGTCAAGC
AAGGCGACGAGATTGCGCTAATGTTGACGCACACGCCGTACAGCGACGGA
AAGCCTGATCCAAAAGAGTACCAGCACGACATGTCGTCAACGCTTATGGA
CCAGTACGACTACGTTACATACGGCAAGGTCTTCAAGATTGAATCAGTGG
CATCAGGCGGGGTAGCAGGAGGAAATAAAGAACCCAAGGTGGCCATCATG
ATTTCGTTCGGTGGCCTGCTTATGAAGCTTTCAGGGGATCAAAAGCACGT
GGCTCGAATTTCTATCGACAGTCCCATCTACTGCTTCGTCCGCAAGACTA
AGACTAACAGAGCAAGTTAAATGTCACACAACCTCTTTGACGACACCTTT
GTCATAACAAGCCTAAACCCGCACAAGAAGCGCTTTGCTCGAGTTGATCG
ATTGGTGGGCAAGAGCACGCTGTTCGAGATGGACTTGTTGCTAGATATTA
ATAGCGAGATTTATACCGTCAAGCAAGGCGACGAGATTGCGCTAATGTTG
ACGCACACGCCGTACAGCGACGGAAAGCCTGATCCAAAAGAGTACCAGCA
CGACATGTCGTCAACGCTTATGGACCAGTACGACTACGTTACATACGGCA
AGGTCTTCAAGATTGAATCAGTGGCATCAGGCGGGGTAGCAGGAGGAAAT
AAAGAACCCAAGGTGGCCATCATGATTTCGTTCGGTGGCCTGCTTATGAA
GCTTTCAGGGGATCAAAAGCACGTGGCTCGAATTTCTATCGACAGTCCCA
TCTACTGCTTCGTCCGCAAGACTAAGACTAACAGAGCAAGTTAA

Synonyms

Publications