jgi.p|Nanoce1779_2|584598, mRNA_3112 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584598
Unique Name	mRNA_3112
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1605
Alignment location	scaffold_7:683523..685543 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584684
Track	FilteredModels2
ProteinId	584598

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:683523..685543 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584598	gene_3112	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584598	mRNA_3112-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3112	CDS_3112	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:683523..685543-
coding sequence from alignment at scaffold_7:683523..685543-

mRNA sequence

>mRNA_3112 ID=mRNA_3112|Name=jgi.p|Nanoce1779_2|584598|organism=Nannochloropsis oceanica|type=mRNA|length=1605bp
CAGAACTATGCCGTACACCCCTGGATTCCGGGTTTTGGTTGCCGCCACCG
TGTTGGCGCGGGTTGCCCTGGCATTTGTGCCTTCCAGTTCCCCTCTGTCC
TCATCTCCCTCCTCTTCCCGCCAGACCTCTTCCCGCCTGCATGTCGGTAA
TGTGAATTTGGACTTTTACCCGGGCCTGCGCGGTCTCTTTGACATGGGCA
ACATTATCCTTGACGAGGTTCGCGCGGGACGGAATGAAGCTCAGCAAGAG
GTTGCGGAGATCACCGGCTGGGTGGCGGAAAAAGTTGGGATTCAGCAACA
CCAGCAAGTCTTGATCAAGCAGCAGCCGGTGGTCTTGCACCCCGTCTTCG
GCGAGCTGGTCAAAGACCTGGTTTACAAGAAGATTTATTGCACGAGCGTC
CAGAAACTTGCCACAATTCCTGTTTGGGAACAGCAGCGTATCTATCGAGC
CGAACGTGCGCAATTGTTGGCCAATGACATCAAGGCGAAGCTGAGGGATG
GGAAAGCTCTAACACTTCCTGGATCCCTCACTGTCTACGAGATGGGAGAT
AAGATTGGATTGTTAGATGGACAGCATCGGTTGGGGGCGTTGAAGATGCT
GATGGAAAGTGATGTGCTGATCCCCGAGGCACATTTGATATTGGTGGAAG
TTTTCCCAGTGAAGGCGGAAGAGGAAGTGAAGCGATTGTTTACTGAGATT
AACACGGCGCAGCCCGTCTCCATCATTGACATGCCCGACATGGCGGATGC
GACGGAAAAAGATATCATCACCCAGGCGTGTGAGATGCTGCGCTTGGAGT
ATGCAGACATGTTCAAGCCCAGCAGCAACTGCAGATTGCCTCATGTCAAT
ATCGATGTCCTACGCGACACACTCTTCAAGAGCAACGTTGTCGGGCGCAC
GGGCGCGGGAACAGCTGATCAACTGGTCGAATGGATCAAGGCAAAGAATG
GCGTTGTTGCTGCTCGAGATGATGCGTTGTGGCAGACTGCCTACAAAGGA
AGGAATACCGAGACGGTAGCCAAGGCCGTGGGAAAAGCGAGAAAAAATGG
ATTTTTCTTGGGAATGGAACCAAATTGGATGGAGGTGGAGTAAAAAAAAA
AGGAATGATGAAGTGGAGAGGGAGAGCGGAGTAAGGAATGAAGAAAGTTT
TGAGTGCGGCTTTCTTTGACACGGGGGGGTGGAAGGGGCTCGATCTTCAA
AGATCCCAGCGACAGATTTGCATGACATTCCAACCCTTTGTTCTTTCGTA
TCCATGATTTCGGTGAGCCGTTGTTGACCGCACCCCTCTCTGCGTTGAGA
TGCTCCATGTCGCTGAGCACCCACCCACTTATTTTACATCGTCCTCATTT
TCCCATCGCTTTGCCTGAAGCAAGCAAGCAAATAGGGAAGGAATCAAACC
CGTTGTTTATATTGTTTTCTACCACCATTCACACGAAACAAGAGAACCGA
CTGACAAGAACATGAGATAGTGACACCCGCAGAAGAAGAGCAGAAATCTC
GGTAGGGGACAAGAATGTAGTGACGAATATAAGCCAGTATGAAAGAGTAC
GAGGACAGGAAAGAAGAAAGGGGGAAAAGAACAATCGATCGATCTGCACT
GAGAA

protein sequence of jgi.p|Nanoce1779_2|584598

>mRNA_3112-protein ID=mRNA_3112-protein|Name=jgi.p|Nanoce1779_2|584598|organism=Nannochloropsis oceanica|type=polypeptide|length=362bp
MPYTPGFRVLVAATVLARVALAFVPSSSPLSSSPSSSRQTSSRLHVGNVN
LDFYPGLRGLFDMGNIILDEVRAGRNEAQQEVAEITGWVAEKVGIQQHQQ
VLIKQQPVVLHPVFGELVKDLVYKKIYCTSVQKLATIPVWEQQRIYRAER
AQLLANDIKAKLRDGKALTLPGSLTVYEMGDKIGLLDGQHRLGALKMLME
SDVLIPEAHLILVEVFPVKAEEEVKRLFTEINTAQPVSIIDMPDMADATE
KDIITQACEMLRLEYADMFKPSSNCRLPHVNIDVLRDTLFKSNVVGRTGA
GTADQLVEWIKAKNGVVAARDDALWQTAYKGRNTETVAKAVGKARKNGFF
LGMEPNWMEVE*

mRNA from alignment at scaffold_7:683523..685543-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3112 ID=mRNA_3112|Name=jgi.p|Nanoce1779_2|584598|organism=Nannochloropsis oceanica|type=mRNA|length=2021bp|location=Sequence derived from alignment at scaffold_7:683523..685543- (Nannochloropsis oceanica)
CAGAACTATGCCGTACACCCCTGGATTCCGGGTTTTGGTTGCCGCCACCG
TGTTGGCGCGGGTTGCCCTGGCATTTGTGCCTTCCAGTTCCCCTCTGTCC
TCATCTCCCTCCTCTTCCCGCCAGACCTCTTCCCGCCTGCATGTCGGTAA
TGTGAATTTGGACTTTTACCCGGGCCTGCGCGGTCTCTTTGACATGGGCA
ACATTATCCTTGACGAGGTTCGCGCGGGACGGAATGAAGCTCAGCAAGAG
GTTGCGGAGATCACCGGCTGGGTGGCGGAAAAAGTTGGGATTCAGCAACA
CCAGCAAGTCTTGATCAAGCAGCAGCCGGTGGTCTTGCACCCCGTCTTCG
GCGAGCTGGTCAAAGACCTGGTTTACAAGAAGATTTATTGCACGAGCGTC
CAGAAACTTGCCACAATTCCTGTTTGGGAACAGCAGCGTATCTATCGAGC
CGAACGTGCGCAATTGTTGGCCAATGACATCAAGGCGAAGCTGAGGGATG
GGAAAGCTCTAACACTTCCTGGATCCCTCACTGTCTACGAGATGGGAGAT
AAGATTGGATTGTTAGATGGACAGCATCGGTTGGGGGCGTTGAAGATGCT
GATGGAAAGTGATGTGCTGATCCCCGAGGCACATTTGATATTGGTGGAAG
TTTTCCCAGTGAAGGCGGAAGAGGAAGTGAAGCGATTGTTTACTGAGATT
AACACGGCGCAGGTACGTTTTGAGGGGAGAGTGAAAAAGAAGAAGGGCAA
AGTTGATGCATGATGATTTTCATACATGTGGTCAAATCATTGCGATACGC
ATAAACTTTCTCACCCACCACCTCTCTCTCCCCTGGTTCTTCCCACACCG
CCAGCCCGTCCCTGTGATTTCATTCCGCAACGTGCGAGACGCTTTCTTTC
ATTACTCTTCACATGATTAAACTTACTCTATCCTTTCTCTGTCCACTCCT
CTCCCTTCTCCTCCCTTTCCTTTCATCATCAGCCCGTCTCCATCATTGAC
ATGCCCGACATGGCGGATGCGACGGAAAAAGATATCATCACCCAGGCGTG
TGAGATGCTGCGCTTGGAGTATGCAGACATGTTCAAGCCCAGCAGCAACT
GCAGATTGCCTCATGTCAATATCGGTAAGCGAGAAAATGAGTGATGGGAT
TGATTGCTCTCCATCCCTTCCATGTATTTATGCTCTTTCTTTTCTTCAAT
ATTTTAAACTTTCCACTCATTGTTTCCACTCCTTTCCACCCATTTTTTCT
CCCTGCCTTCCTCCCTCTAGATGTCCTACGCGACACACTCTTCAAGAGCA
ACGTTGTCGGGCGCACGGGCGCGGGAACAGCTGATCAACTGGTCGAATGG
ATCAAGGCAAAGAATGGCGTTGTTGCTGCTCGAGATGATGCGTTGTGGCA
GACTGCCTACAAAGGAAGGAATACCGAGACGGTAGCCAAGGCCGTGGGAA
AAGCGAGAAAAAATGGATTTTTCTTGGGAATGGAACCAAATTGGATGGAG
GTGGAGTAAAAAAAAAAGGAATGATGAAGTGGAGAGGGAGAGCGGAGTAA
GGAATGAAGAAAGTTTTGAGTGCGGCTTTCTTTGACACGGGGGGGTGGAA
GGGGCTCGATCTTCAAAGATCCCAGCGACAGATTTGCATGACATTCCAAC
CCTTTGTTCTTTCGTATCCATGATTTCGGTGAGCCGTTGTTGACCGCACC
CCTCTCTGCGTTGAGATGCTCCATGTCGCTGAGCACCCACCCACTTATTT
TACATCGTCCTCATTTTCCCATCGCTTTGCCTGAAGCAAGCAAGCAAATA
GGGAAGGAATCAAACCCGTTGTTTATATTGTTTTCTACCACCATTCACAC
GAAACAAGAGAACCGACTGACAAGAACATGAGATAGTGACACCCGCAGAA
GAAGAGCAGAAATCTCGGTAGGGGACAAGAATGTAGTGACGAATATAAGC
CAGTATGAAAGAGTACGAGGACAGGAAAGAAGAAAGGGGGAAAAGAACAA
TCGATCGATCTGCACTGAGAA

Coding sequence (CDS) from alignment at scaffold_7:683523..685543-

>mRNA_3112 ID=mRNA_3112|Name=jgi.p|Nanoce1779_2|584598|organism=Nannochloropsis oceanica|type=CDS|length=3258bp|location=Sequence derived from alignment at scaffold_7:683523..685543- (Nannochloropsis oceanica)
ATGTCCTACGCGACACACTCTTCAAGAGCAACGTTGTCGGGCGCACGGGC
GCGGGAACAGCTGATCAACTGGTCGAATGGATCAAGGCAAAGAATGGCGT
TGTTGCTGCTCGAGATGATGCGTTGTGGCAGACTGCCTACAAAGGAAGGA
ATACCGAGACGGTAGCCAAGGCCGTGGGAAAAGCGAGAAAAAATGGATTT
TTCTTGGGAATGGAACCAAATTGGATGGAGGTGGAGTAACCCGTCTCCAT
CATTGACATGCCCGACATGGCGGATGCGACGGAAAAAGATATCATCACCC
AGGCGTGTGAGATGCTGCGCTTGGAGTATGCAGACATGTTCAAGCCCAGC
AGCAACTGCAGATTGCCTCATGTCAATATCGATGCCGTACACCCCTGGAT
TCCGGGTTTTGGTTGCCGCCACCGTGTTGGCGCGGGTTGCCCTGGCATTT
GTGCCTTCCAGTTCCCCTCTGTCCTCATCTCCCTCCTCTTCCCGCCAGAC
CTCTTCCCGCCTGCATGTCGGTAATGTGAATTTGGACTTTTACCCGGGCC
TGCGCGGTCTCTTTGACATGGGCAACATTATCCTTGACGAGGTTCGCGCG
GGACGGAATGAAGCTCAGCAAGAGGTTGCGGAGATCACCGGCTGGGTGGC
GGAAAAAGTTGGGATTCAGCAACACCAGCAAGTCTTGATCAAGCAGCAGC
CGGTGGTCTTGCACCCCGTCTTCGGCGAGCTGGTCAAAGACCTGGTTTAC
AAGAAGATTTATTGCACGAGCGTCCAGAAACTTGCCACAATTCCTGTTTG
GGAACAGCAGCGTATCTATCGAGCCGAACGTGCGCAATTGTTGGCCAATG
ACATCAAGGCGAAGCTGAGGGATGGGAAAGCTCTAACACTTCCTGGATCC
CTCACTGTCTACGAGATGGGAGATAAGATTGGATTGTTAGATGGACAGCA
TCGGTTGGGGGCGTTGAAGATGCTGATGGAAAGTGATGTGCTGATCCCCG
AGGCACATTTGATATTGGTGGAAGTTTTCCCAGTGAAGGCGGAAGAGGAA
GTGAAGCGATTGTTTACTGAGATTAACACGGCGCAGATGTCCTACGCGAC
ACACTCTTCAAGAGCAACGTTGTCGGGCGCACGGGCGCGGGAACAGCTGA
TCAACTGGTCGAATGGATCAAGGCAAAGAATGGCGTTGTTGCTGCTCGAG
ATGATGCGTTGTGGCAGACTGCCTACAAAGGAAGGAATACCGAGACGGTA
GCCAAGGCCGTGGGAAAAGCGAGAAAAAATGGATTTTTCTTGGGAATGGA
ACCAAATTGGATGGAGGTGGAGTAACCCGTCTCCATCATTGACATGCCCG
ACATGGCGGATGCGACGGAAAAAGATATCATCACCCAGGCGTGTGAGATG
CTGCGCTTGGAGTATGCAGACATGTTCAAGCCCAGCAGCAACTGCAGATT
GCCTCATGTCAATATCGATGCCGTACACCCCTGGATTCCGGGTTTTGGTT
GCCGCCACCGTGTTGGCGCGGGTTGCCCTGGCATTTGTGCCTTCCAGTTC
CCCTCTGTCCTCATCTCCCTCCTCTTCCCGCCAGACCTCTTCCCGCCTGC
ATGTCGGTAATGTGAATTTGGACTTTTACCCGGGCCTGCGCGGTCTCTTT
GACATGGGCAACATTATCCTTGACGAGGTTCGCGCGGGACGGAATGAAGC
TCAGCAAGAGGTTGCGGAGATCACCGGCTGGGTGGCGGAAAAAGTTGGGA
TTCAGCAACACCAGCAAGTCTTGATCAAGCAGCAGCCGGTGGTCTTGCAC
CCCGTCTTCGGCGAGCTGGTCAAAGACCTGGTTTACAAGAAGATTTATTG
CACGAGCGTCCAGAAACTTGCCACAATTCCTGTTTGGGAACAGCAGCGTA
TCTATCGAGCCGAACGTGCGCAATTGTTGGCCAATGACATCAAGGCGAAG
CTGAGGGATGGGAAAGCTCTAACACTTCCTGGATCCCTCACTGTCTACGA
GATGGGAGATAAGATTGGATTGTTAGATGGACAGCATCGGTTGGGGGCGT
TGAAGATGCTGATGGAAAGTGATGTGCTGATCCCCGAGGCACATTTGATA
TTGGTGGAAGTTTTCCCAGTGAAGGCGGAAGAGGAAGTGAAGCGATTGTT
TACTGAGATTAACACGGCGCAGATGTCCTACGCGACACACTCTTCAAGAG
CAACGTTGTCGGGCGCACGGGCGCGGGAACAGCTGATCAACTGGTCGAAT
GGATCAAGGCAAAGAATGGCGTTGTTGCTGCTCGAGATGATGCGTTGTGG
CAGACTGCCTACAAAGGAAGGAATACCGAGACGGTAGCCAAGGCCGTGGG
AAAAGCGAGAAAAAATGGATTTTTCTTGGGAATGGAACCAAATTGGATGG
AGGTGGAGTAACCCGTCTCCATCATTGACATGCCCGACATGGCGGATGCG
ACGGAAAAAGATATCATCACCCAGGCGTGTGAGATGCTGCGCTTGGAGTA
TGCAGACATGTTCAAGCCCAGCAGCAACTGCAGATTGCCTCATGTCAATA
TCGATGCCGTACACCCCTGGATTCCGGGTTTTGGTTGCCGCCACCGTGTT
GGCGCGGGTTGCCCTGGCATTTGTGCCTTCCAGTTCCCCTCTGTCCTCAT
CTCCCTCCTCTTCCCGCCAGACCTCTTCCCGCCTGCATGTCGGTAATGTG
AATTTGGACTTTTACCCGGGCCTGCGCGGTCTCTTTGACATGGGCAACAT
TATCCTTGACGAGGTTCGCGCGGGACGGAATGAAGCTCAGCAAGAGGTTG
CGGAGATCACCGGCTGGGTGGCGGAAAAAGTTGGGATTCAGCAACACCAG
CAAGTCTTGATCAAGCAGCAGCCGGTGGTCTTGCACCCCGTCTTCGGCGA
GCTGGTCAAAGACCTGGTTTACAAGAAGATTTATTGCACGAGCGTCCAGA
AACTTGCCACAATTCCTGTTTGGGAACAGCAGCGTATCTATCGAGCCGAA
CGTGCGCAATTGTTGGCCAATGACATCAAGGCGAAGCTGAGGGATGGGAA
AGCTCTAACACTTCCTGGATCCCTCACTGTCTACGAGATGGGAGATAAGA
TTGGATTGTTAGATGGACAGCATCGGTTGGGGGCGTTGAAGATGCTGATG
GAAAGTGATGTGCTGATCCCCGAGGCACATTTGATATTGGTGGAAGTTTT
CCCAGTGAAGGCGGAAGAGGAAGTGAAGCGATTGTTTACTGAGATTAACA
CGGCGCAG

Synonyms

Publications