jgi.p|Nanoce1779_2|550977, mRNA_311 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|550977
Unique NamemRNA_311
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1475
Alignment locationscaffold_3:770684..772425 +

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Properties
Property NameValue
TranscriptId551063
TrackFilteredModels2
ProteinId550977
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:770684..772425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|550977gene_311Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|550977mRNA_311-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_311CDS_311Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_311 ID=mRNA_311|Name=jgi.p|Nanoce1779_2|550977|organism=Nannochloropsis oceanica|type=mRNA|length=1475bp
ATGCAGTCTGACGTGGGCATCCGGATTTTTCATTTATATTTGCCGGTATG
TATACATATGAGTCAGCAGCAGCGACAACAACGACAACAAGGATTGCAAC
CACAACACCAGCAGCAGCGCTGTCCTCTCGTCGTGGGTATCAATGCTCCC
CAAGGCGCTGGCAAGACGACCCTAGTCAATTTCTGCCGAGCTCTCTTCAA
GCTAGACGGGCTGAGGTGCGTCGTTCTTTCCATTGATGATTTTTATTTAA
CCAACAAAGAGCAACGAGCCGTAGCGGCAAAGCACAAAGGTAATCCTCTC
TTACAATACCGGGGGAATGCTGGGACGCATGATGTCGCCCTAGGCCGAGA
AACCATCTTGAAATGCATTTCCGCTAGGGAAGGAGAGAATATAACAGTTC
CTTTTTATGATAAGTCTTTGTGTGGAGGATGGGGGGATCGAGCACCACGG
GAGAGATGGCCAGTGGTGGAGGGCCCTGTGGACGTTATTTTGCTGGAAGG
GTGGATGCTTGGATTTAGGCCGTGGCCCTCTGATGGGGAGGAAGGGGGAA
GGAGTGAGGAGGGATTGAAGGACGTGAATAATTACTTGGGCAGCTATCAG
GAATGGCACGAGCTGGTCGATGCTTGGGTGATAGTGCAGGTGGAGGACTT
AGAGGTAATATACAAGTGGCGGTTGGAGGCGGAACGGAAAATGAGAGAGA
AAAAGGGGAAGGAGGGGAGCATGACTGATGAGGAGGTGGGGGATTTTGTG
TCGAGATTCTTGCCGGCCTACAGGGCGTATTTGCAGCATTCTTTGTATGC
TGCTGATGCGTTGCCGTCGGAGAAGCCGGTGTTGCGGGTGGTGATCGATT
GTGACAGGAAGCCCAAGGGGTAAGACGAGGAAAGAGGGTAGATACGGAAG
AAGACAACAGCTGTAATTTGCATCGAGTTTAAGGATGAAAACAGCGGCTT
CTTTACATTTATATACATTTCGTTACATCTCTTCTTGTTCTGCTGGGTGT
GGGCGTGCATCTCTCGTTACTGCCTCTCAAAAGCTTTGTCATTTTCCCCT
TTTTTCCTTCCCTGGCCCCCCTCCCCTCCTCACGATGGAAACGGATATTG
TGTCGCAAACGCCTCCACCCTCTCTCTTAACGCTACCACTTCGCCCGCAT
GCGCAACCATTGTCTTTTCAAAATCCACCAATTTCTTACTGCTACTTCCC
GCCTGTATCTTCAAAGCCAACCGTAAGCCTTCATCCAGGAAGGCCGCCAC
CTTGACGAAATCGCCTTCTGTCAACCCCCGTGTAGTCATGGCTGGGGTCC
CTACCCTAACCCCACCTGGAGCACTAGCACTTTTATCCCCATGGATTGTA
TTTTTATTCACCGAAATGGCAATAGCCTCTAATAGCTTCTCCACTTTGGA
GCCCGTTATACCATGTGGACGCACATCCCACAATAAGAGATGATTCTCCG
TGCCATTCGTCACGATGACATGTCC
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protein sequence of jgi.p|Nanoce1779_2|550977

>mRNA_311-protein ID=mRNA_311-protein|Name=jgi.p|Nanoce1779_2|550977|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp
MQSDVGIRIFHLYLPVCIHMSQQQRQQRQQGLQPQHQQQRCPLVVGINAP
QGAGKTTLVNFCRALFKLDGLRCVVLSIDDFYLTNKEQRAVAAKHKGNPL
LQYRGNAGTHDVALGRETILKCISAREGENITVPFYDKSLCGGWGDRAPR
ERWPVVEGPVDVILLEGWMLGFRPWPSDGEEGGRSEEGLKDVNNYLGSYQ
EWHELVDAWVIVQVEDLEVIYKWRLEAERKMREKKGKEGSMTDEEVGDFV
SRFLPAYRAYLQHSLYAADALPSEKPVLRVVIDCDRKPKG*
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mRNA from alignment at scaffold_3:770684..772425+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_311 ID=mRNA_311|Name=jgi.p|Nanoce1779_2|550977|organism=Nannochloropsis oceanica|type=mRNA|length=1742bp|location=Sequence derived from alignment at scaffold_3:770684..772425+ (Nannochloropsis oceanica)
ATGCAGTCTGACGTGGGCATCCGGATTTTTCATTTATATTTGCCGGTATG
TATACATATGAGTGTGTGTGTGTGTCAGTGTGTCAGTGTGTGTATTGTTG
TGTGACAAACAAACAAACAAACAAACAAACGTGTGTCAGTGTGTGTATTG
TTGTTGGAAAGGAAAGGGTTTCTTTTGATTCCATCTCACTTCTCCAACCC
ATTTTTCATCTCTCTCTCCTCCTTTGGTCCCCAGCTTTACTTTTGGCTAC
GCGGCCTCGTGCTGCGGAGTCGATGCCGAAATAGGCCGTTTGAGCCGCCA
TCACCACTCCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCGACAACAACG
ACAACAAGGATTGCAACCACAACACCAGCAGCAGCGCTGTCCTCTCGTCG
TGGGTATCAATGCTCCCCAAGGCGCTGGCAAGACGACCCTAGTCAATTTC
TGCCGAGCTCTCTTCAAGCTAGACGGGCTGAGGTGCGTCGTTCTTTCCAT
TGATGATTTTTATTTAACCAACAAAGAGCAACGAGCCGTAGCGGCAAAGC
ACAAAGGTAATCCTCTCTTACAATACCGGGGGAATGCTGGGACGCATGAT
GTCGCCCTAGGCCGAGAAACCATCTTGAAATGCATTTCCGCTAGGGAAGG
AGAGAATATAACAGTTCCTTTTTATGATAAGTCTTTGTGTGGAGGATGGG
GGGATCGAGCACCACGGGAGAGATGGCCAGTGGTGGAGGGCCCTGTGGAC
GTTATTTTGCTGGAAGGGTGGATGCTTGGATTTAGGCCGTGGCCCTCTGA
TGGGGAGGAAGGGGGAAGGAGTGAGGAGGGATTGAAGGACGTGAATAATT
ACTTGGGCAGCTATCAGGAATGGCACGAGCTGGTCGATGCTTGGGTGATA
GTGCAGGTGGAGGACTTAGAGGTAATATACAAGTGGCGGTTGGAGGCGGA
ACGGAAAATGAGAGAGAAAAAGGGGAAGGAGGGGAGCATGACTGATGAGG
AGGTGGGGGATTTTGTGTCGAGATTCTTGCCGGCCTACAGGGCGTATTTG
CAGCATTCTTTGTATGCTGCTGATGCGTTGCCGTCGGAGAAGCCGGTGTT
GCGGGTGGTGATCGATTGTGACAGGAAGCCCAAGGGGTAAGACGAGGAAA
GAGGGTAGATACGGAAGAAGACAACAGCTGTAATTTGCATCGAGTTTAAG
GATGAAAACAGCGGCTTCTTTACATTTATATACATTTCGTTACATCTCTT
CTTGTTCTGCTGGGTGTGGGCGTGCATCTCTCGTTACTGCCTCTCAAAAG
CTTTGTCATTTTCCCCTTTTTTCCTTCCCTGGCCCCCCTCCCCTCCTCAC
GATGGAAACGGATATTGTGTCGCAAACGCCTCCACCCTCTCTCTTAACGC
TACCACTTCGCCCGCATGCGCAACCATTGTCTTTTCAAAATCCACCAATT
TCTTACTGCTACTTCCCGCCTGTATCTTCAAAGCCAACCGTAAGCCTTCA
TCCAGGAAGGCCGCCACCTTGACGAAATCGCCTTCTGTCAACCCCCGTGT
AGTCATGGCTGGGGTCCCTACCCTAACCCCACCTGGAGCACTAGCACTTT
TATCCCCATGGATTGTATTTTTATTCACCGAAATGGCAATAGCCTCTAAT
AGCTTCTCCACTTTGGAGCCCGTTATACCATGTGGACGCACATCCCACAA
TAAGAGATGATTCTCCGTGCCATTCGTCACGATGACATGTCC
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Coding sequence (CDS) from alignment at scaffold_3:770684..772425+

>mRNA_311 ID=mRNA_311|Name=jgi.p|Nanoce1779_2|550977|organism=Nannochloropsis oceanica|type=CDS|length=1746bp|location=Sequence derived from alignment at scaffold_3:770684..772425+ (Nannochloropsis oceanica)
ATGCAGTCTGACGTGGGCATCCGGATTTTTCATTTATATTTGCCGGTATG
TATACATATGAGTCAGCAGCAGCGACAACAACGACAACAAGGATTGCAAC
CACAACACCAGCAGCAGCGCTGTCCTCTCGTCGTGGGTATCAATGCTCCC
CAAGGCGCTGGCAAGACGACCCTAGTCAATTTCTGCCGAGCTCTCTTCAA
GCTAGACGGGCTGAGGTGCGTCGTTCTTTCCATTGATGATTTTTATTTAA
CCAACAAAGAGCAACGAGCCGTAGCGGCAAAGCACAAAGGTAATCCTCTC
TTACAATACCGGGGGAATGCTGGGACGCATGATGTCGCCCTAGGCCGAGA
AACCATCTTGAAATGCATTTCCGCTAGGGAAGGAGAGAATATAACAGTTC
CTTTTTATGATAAGTCTTTGTGTGGAGGATGGGGGGATCGAGCACCACGG
GAGAGATGGCCAGTGGTGGAGGGCCCTGTGGACGTTATTTTGCTGGAAGG
GTGGATGCTTGGATTTAGGCCGTGGCCCTCTGATGGGGAGGAAGGGGGAA
GGAGTGAGGAGGGATTGAAGGACGTGAATAATTACTTGGGCAGCTATCAG
GAATGGCACGAGCTGGTCGATGCTTGGGTGATAGTGCAGGTGGAGGACTT
AGAGGTAATATACAAGTGGCGGTTGGAGGCGGAACGGAAAATGAGAGAGA
AAAAGGGGAAGGAGGGGAGCATGACTGATGAGGAGGTGGGGGATTTTGTG
TCGAGATTCTTGCCGGCCTACAGGGCGTATTTGCAGCATTCTTTGTATGC
TGCTGATGCGTTGCCGTCGGAGAAGCCGGTGTTGCGGGTGGTGATCGATT
GTGACAGGAAGCCCAAGGGGTAAATGCAGTCTGACGTGGGCATCCGGATT
TTTCATTTATATTTGCCGGTATGTATACATATGAGTCAGCAGCAGCGACA
ACAACGACAACAAGGATTGCAACCACAACACCAGCAGCAGCGCTGTCCTC
TCGTCGTGGGTATCAATGCTCCCCAAGGCGCTGGCAAGACGACCCTAGTC
AATTTCTGCCGAGCTCTCTTCAAGCTAGACGGGCTGAGGTGCGTCGTTCT
TTCCATTGATGATTTTTATTTAACCAACAAAGAGCAACGAGCCGTAGCGG
CAAAGCACAAAGGTAATCCTCTCTTACAATACCGGGGGAATGCTGGGACG
CATGATGTCGCCCTAGGCCGAGAAACCATCTTGAAATGCATTTCCGCTAG
GGAAGGAGAGAATATAACAGTTCCTTTTTATGATAAGTCTTTGTGTGGAG
GATGGGGGGATCGAGCACCACGGGAGAGATGGCCAGTGGTGGAGGGCCCT
GTGGACGTTATTTTGCTGGAAGGGTGGATGCTTGGATTTAGGCCGTGGCC
CTCTGATGGGGAGGAAGGGGGAAGGAGTGAGGAGGGATTGAAGGACGTGA
ATAATTACTTGGGCAGCTATCAGGAATGGCACGAGCTGGTCGATGCTTGG
GTGATAGTGCAGGTGGAGGACTTAGAGGTAATATACAAGTGGCGGTTGGA
GGCGGAACGGAAAATGAGAGAGAAAAAGGGGAAGGAGGGGAGCATGACTG
ATGAGGAGGTGGGGGATTTTGTGTCGAGATTCTTGCCGGCCTACAGGGCG
TATTTGCAGCATTCTTTGTATGCTGCTGATGCGTTGCCGTCGGAGAAGCC
GGTGTTGCGGGTGGTGATCGATTGTGACAGGAAGCCCAAGGGGTAA
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Synonyms
Publications