jgi.p|Nanoce1779_2|584589, mRNA_3109 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584589
Unique Name	mRNA_3109
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1598
Alignment location	scaffold_7:675321..677109 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584675
Track	FilteredModels2
ProteinId	584589

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:675321..677109 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584589	gene_3109	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584589	mRNA_3109-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3109	CDS_3109	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:675321..677109+
coding sequence from alignment at scaffold_7:675321..677109+

mRNA sequence

>mRNA_3109 ID=mRNA_3109|Name=jgi.p|Nanoce1779_2|584589|organism=Nannochloropsis oceanica|type=mRNA|length=1598bp
AACAGGACGTCTCACACGAGGACATCTCATGCCGGTTTCGCATACCGCAA
GAAGACAGCGCGTCCTGTGGCTTCTGTTGCTGGTAGCAGGCTTTGTGGCG
CTGGCTGATTCTTTTTTTCTGCCGCTTCCGTCAGCCAAAATGTTGTCTAT
CTCCCCTACCAAGGCGGTCGCCCCATCTTCTCCCCCTACCCAGTTCTCGG
CCAACACCGCCGAAACCACTTCACAAGCCTACGGCCTCGCCATAGACCAA
GATATGCGACGAAAGCTCAAGCGTGATCTCATAACGATTCAGGAGAGGCT
TAATGCAGAGCATGTCGACTTAATGAACCGCTGGGTGAAGGCGTACTGTC
CCATTGGAGAGGAGATCAGCAAGGCCAACTTTTGGCGGGGGGACGCTATG
ACCATCGCCGACACGAAATGTATGCGTGTAGGACTCGACGGTTTGGATTT
GCGTGTGACTGTTGCAGAACAGGGAATGTTCGGTGGGCCCAGGATGCGGG
AGCTTGATCAGACTATCAAGTTCAGCACCAACAAAATACGGACCAGCCCG
GCTGATTTGATAAGAGCAATGATTGGTATGGCCTCAGCGATTGGCGACGA
GGATTCTACTGCCAGTTTGTATAAAATTCCAGTTGATGACGACAAATGGG
TGATTCCGAACAATCTATACCTCAACTGCGTCCCCTGGAAGCCCTTCGCC
CGCCAATTTTTCTACAACAGAGTTGTACGCGCCATGGATGCGGCCATCAC
CGACCCCTCATTCTCTAACCGCATGCAAATAAGTTTGTTGACCCCAGAAA
CCAGCCCTGCTTTTGACACTTATCGTATCGGCACCGTCTTAGAGCTTGTC
CGGGAAATGACATTCCATCAAGTCATGTGTAATAAGCGCGTCAAGCTGTG
TGTTCAGCAAAAAATGGGGGAGGGTTTTCTGAAAGGATTGCCTATTTCCC
TTAATGGCTGCAGGTTCATCTTGGAAAACATGGACTGGCAATCGAAGGAG
GGCGAGGAAAAAGAAGGTGTGGTGGGGACGAAAATCTTCTTCGGGGAAGT
TGGGGAGCATGAGGTGGAGGACGAAGATGATGTCTTTATTTTGATCGCGC
CGCAGAATGTTGTGGGAGTAAGTATCATTCCTCTGCTGGAAAAGATGGCG
AACAAGGCGGGCGGGCGGCCATTCATTCTCTTGAACCCCAGCTTGAAAGA
CAGGCCTAGCGCTGGGGATGTGATGCAGGTCCGTGGTCGAGAGGAGAGGA
TGGCTTTCGCCAAGACGTTCAAAACAGCGTTTGCGTTTGAGACACTGCAT
GAAAAAGGATTGTTTAAAATCAATGGAGCAGTGGGGAAAGCCGCACATGA
TCAGCCTTGGATAAGGTATGTGCTTGTGGATAACCAGGCGGGGCTCGAGA
ATGTGAATGAACGGAAGGAGATCTATGAACCCGTGCAGGTAACAGAGAGG
GAGCCTATCGATTAAAGGGGGCTGAGAGGAAAAGAGAGCACGGAGATTGG
AGATTTTTACTATTTGATCGAGTGATGTAGTTTAAAAATAAAATGAGTGG
CAAATGACAATTAAAAAGGAAATGAGACGGATATAGGTTGTAATGAAT

protein sequence of jgi.p|Nanoce1779_2|584589

>mRNA_3109-protein ID=mRNA_3109-protein|Name=jgi.p|Nanoce1779_2|584589|organism=Nannochloropsis oceanica|type=polypeptide|length=479bp
MPVSHTARRQRVLWLLLLVAGFVALADSFFLPLPSAKMLSISPTKAVAPS
SPPTQFSANTAETTSQAYGLAIDQDMRRKLKRDLITIQERLNAEHVDLMN
RWVKAYCPIGEEISKANFWRGDAMTIADTKCMRVGLDGLDLRVTVAEQGM
FGGPRMRELDQTIKFSTNKIRTSPADLIRAMIGMASAIGDEDSTASLYKI
PVDDDKWVIPNNLYLNCVPWKPFARQFFYNRVVRAMDAAITDPSFSNRMQ
ISLLTPETSPAFDTYRIGTVLELVREMTFHQVMCNKRVKLCVQQKMGEGF
LKGLPISLNGCRFILENMDWQSKEGEEKEGVVGTKIFFGEVGEHEVEDED
DVFILIAPQNVVGVSIIPLLEKMANKAGGRPFILLNPSLKDRPSAGDVMQ
VRGREERMAFAKTFKTAFAFETLHEKGLFKINGAVGKAAHDQPWIRYVLV
DNQAGLENVNERKEIYEPVQVTEREPID*

mRNA from alignment at scaffold_7:675321..677109+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3109 ID=mRNA_3109|Name=jgi.p|Nanoce1779_2|584589|organism=Nannochloropsis oceanica|type=mRNA|length=1789bp|location=Sequence derived from alignment at scaffold_7:675321..677109+ (Nannochloropsis oceanica)
AACAGGACGTCTCACACGAGGACATCTCATGCCGGTTTCGCATACCGCAA
GAAGACAGCGCGTCCTGTGGCTTCTGTTGCTGGTAGCAGGCTTTGTGGCG
CTGGCTGATTCTTTTTTTCTGCCGCTTCCGTCAGCCAAAATGTTGTCTAT
CTCCCCTACCAAGGCGGTCGCCCCATCTTCTCCCCCTACCCAGTTCTCGG
CCAACACCGCCGAAACCACTTCACAAGCCTACGGCCTCGCCATAGACCAA
GATATGCGACGAAAGCTCAAGCGTGATCTCATAACGATTCAGGAGAGGCT
TAATGCAGAGCATGTCGACTTAATGAACCGCTGGGTGAAGGCGTACTGTC
CCATTGGAGAGGAGATCAGCAAGGCCAACTTTTGGCGGGGGGACGCTATG
ACCATCGCCGACACGAAATGTATGCGTGTAGGACTCGACGGTTTGGATTT
GCGTGTGACTGTTGCAGAACAGGGAATGTTCGGTGGGCCCAGGATGCGGG
AGCTTGATCAGACTATCAAGTTCAGCACCAACAAAATACGGACCAGCCCG
GCTGATTTGATAAGAGCAATGATTGGTATGGCCTCAGCGATTGGCGACGA
GGATTCTACTGCCAGTTTGTATAAAATTCCAGTTGATGACGACAAATGGG
TGGTAGGTCTTTGTATTGTTTTGTTGGGAGGGAGAAAGTGCGGCCGCTTT
CGGTCCATATGAGATAAACACTTCTTTCCCTTCCTTTCTTTTGTGCTTTA
ATTCTTGGAAGCATTCAGTTAGCAATAGTTTCGTATAGTTTTTCTGTTGT
CTCATGTATTTTTATGTTCCATTCTCTCAACCATTTCCCTCAGATTCCGA
ACAATCTATACCTCAACTGCGTCCCCTGGAAGCCCTTCGCCCGCCAATTT
TTCTACAACAGAGTTGTACGCGCCATGGATGCGGCCATCACCGACCCCTC
ATTCTCTAACCGCATGCAAATAAGTTTGTTGACCCCAGAAACCAGCCCTG
CTTTTGACACTTATCGTATCGGCACCGTCTTAGAGCTTGTCCGGGAAATG
ACATTCCATCAAGTCATGTGTAATAAGCGCGTCAAGCTGTGTGTTCAGCA
AAAAATGGGGGAGGGTTTTCTGAAAGGATTGCCTATTTCCCTTAATGGCT
GCAGGTTCATCTTGGAAAACATGGACTGGCAATCGAAGGAGGGCGAGGAA
AAAGAAGGTGTGGTGGGGACGAAAATCTTCTTCGGGGAAGTTGGGGAGCA
TGAGGTGGAGGACGAAGATGATGTCTTTATTTTGATCGCGCCGCAGAATG
TTGTGGGAGTAAGTATCATTCCTCTGCTGGAAAAGATGGCGAACAAGGCG
GGCGGGCGGCCATTCATTCTCTTGAACCCCAGCTTGAAAGACAGGCCTAG
CGCTGGGGATGTGATGCAGGTCCGTGGTCGAGAGGAGAGGATGGCTTTCG
CCAAGACGTTCAAAACAGCGTTTGCGTTTGAGACACTGCATGAAAAAGGA
TTGTTTAAAATCAATGGAGCAGTGGGGAAAGCCGCACATGATCAGCCTTG
GATAAGGTATGTGCTTGTGGATAACCAGGCGGGGCTCGAGAATGTGAATG
AACGGAAGGAGATCTATGAACCCGTGCAGGTAACAGAGAGGGAGCCTATC
GATTAAAGGGGGCTGAGAGGAAAAGAGAGCACGGAGATTGGAGATTTTTA
CTATTTGATCGAGTGATGTAGTTTAAAAATAAAATGAGTGGCAAATGACA
ATTAAAAAGGAAATGAGACGGATATAGGTTGTAATGAAT

Coding sequence (CDS) from alignment at scaffold_7:675321..677109+

>mRNA_3109 ID=mRNA_3109|Name=jgi.p|Nanoce1779_2|584589|organism=Nannochloropsis oceanica|type=CDS|length=2874bp|location=Sequence derived from alignment at scaffold_7:675321..677109+ (Nannochloropsis oceanica)
ATGCCGGTTTCGCATACCGCAAGAAGACAGCGCGTCCTGTGGCTTCTGTT
GCTGGTAGCAGGCTTTGTGGCGCTGGCTGATTCTTTTTTTCTGCCGCTTC
CGTCAGCCAAAATGTTGTCTATCTCCCCTACCAAGGCGGTCGCCCCATCT
TCTCCCCCTACCCAGTTCTCGGCCAACACCGCCGAAACCACTTCACAAGC
CTACGGCCTCGCCATAGACCAAGATATGCGACGAAAGCTCAAGCGTGATC
TCATAACGATTCAGGAGAGGCTTAATGCAGAGCATGTCGACTTAATGAAC
CGCTGGGTGAAGGCGTACTGTCCCATTGGAGAGGAGATCAGCAAGGCCAA
CTTTTGGCGGGGGGACGCTATGACCATCGCCGACACGAAATGTATGCGTG
TAGGACTCGACGGTTTGGATTTGCGTGTGACTGTTGCAGAACAGGGAATG
TTCGGTGGGCCCAGGATGCGGGAGCTTGATCAGACTATCAAGTTCAGCAC
CAACAAAATACGGACCAGCCCGGCTGATTTGATAAGAGCAATGATTGGTA
TGGCCTCAGCGATTGGCGACGAGGATTCTACTGCCAGTTTGTATAAAATT
CCAGTTGATGACGACAAATGGGTGATTCCGAACAATCTATACCTCAACTG
CGTCCCCTGGAAGCCCTTCGCCCGCCAATTTTTCTACAACAGAGTTGTAC
GCGCCATGGATGCGGCCATCACCGACCCCTCATTCTCTAACCGCATGCAA
ATAAGTTTGTTGACCCCAGAAACCAGCCCTGCTTTTGACACTTATCGTAT
CGGCACCGTCTTAGAGCTTGTCCGGGAAATGACATTCCATCAAGTCATGT
GTAATAAGCGCGTCAAGCTGTGTGTTCAGCAAAAAATGGGGGAGGGTTTT
CTGAAAGGATTGCCTATTTCCCTTAATGGCTGCAGGTTCATCTTGGAAAA
CATGGACTGGCAATCGAAGGAGGGCGAGGAAAAAGAAGGTGTGGTGGGGA
CGAAAATCTTCTTCGGGGAAGTTGGGGAGCATGAGGTGGAGGACGAAGAT
GATGTCTTTATTTTGATCGCGCCGCAGAATGTTGTGGGAGTAAGTATCAT
TCCTCTGCTGGAAAAGATGGCGAACAAGGCGGGCGGGCGGCCATTCATTC
TCTTGAACCCCAGCTTGAAAGACAGGCCTAGCGCTGGGGATGTGATGCAG
GTCCGTGGTCGAGAGGAGAGGATGGCTTTCGCCAAGACGTTCAAAACAGC
GTTTGCGTTTGAGACACTGCATGAAAAAGGATTGTTTAAAATCAATGGAG
CAGTGGGGAAAGCCGCACATGATCAGCCTTGGATAAGGTATGTGCTTGTG
GATAACCAGGCGGGGCTCGAGAATGTGAATGAACGGAAGGAGATCTATGA
ACCCGTGCAGGTAACAGAGAGGGAGCCTATCGATTAAATGCCGGTTTCGC
ATACCGCAAGAAGACAGCGCGTCCTGTGGCTTCTGTTGCTGGTAGCAGGC
TTTGTGGCGCTGGCTGATTCTTTTTTTCTGCCGCTTCCGTCAGCCAAAAT
GTTGTCTATCTCCCCTACCAAGGCGGTCGCCCCATCTTCTCCCCCTACCC
AGTTCTCGGCCAACACCGCCGAAACCACTTCACAAGCCTACGGCCTCGCC
ATAGACCAAGATATGCGACGAAAGCTCAAGCGTGATCTCATAACGATTCA
GGAGAGGCTTAATGCAGAGCATGTCGACTTAATGAACCGCTGGGTGAAGG
CGTACTGTCCCATTGGAGAGGAGATCAGCAAGGCCAACTTTTGGCGGGGG
GACGCTATGACCATCGCCGACACGAAATGTATGCGTGTAGGACTCGACGG
TTTGGATTTGCGTGTGACTGTTGCAGAACAGGGAATGTTCGGTGGGCCCA
GGATGCGGGAGCTTGATCAGACTATCAAGTTCAGCACCAACAAAATACGG
ACCAGCCCGGCTGATTTGATAAGAGCAATGATTGGTATGGCCTCAGCGAT
TGGCGACGAGGATTCTACTGCCAGTTTGTATAAAATTCCAGTTGATGACG
ACAAATGGGTGATTCCGAACAATCTATACCTCAACTGCGTCCCCTGGAAG
CCCTTCGCCCGCCAATTTTTCTACAACAGAGTTGTACGCGCCATGGATGC
GGCCATCACCGACCCCTCATTCTCTAACCGCATGCAAATAAGTTTGTTGA
CCCCAGAAACCAGCCCTGCTTTTGACACTTATCGTATCGGCACCGTCTTA
GAGCTTGTCCGGGAAATGACATTCCATCAAGTCATGTGTAATAAGCGCGT
CAAGCTGTGTGTTCAGCAAAAAATGGGGGAGGGTTTTCTGAAAGGATTGC
CTATTTCCCTTAATGGCTGCAGGTTCATCTTGGAAAACATGGACTGGCAA
TCGAAGGAGGGCGAGGAAAAAGAAGGTGTGGTGGGGACGAAAATCTTCTT
CGGGGAAGTTGGGGAGCATGAGGTGGAGGACGAAGATGATGTCTTTATTT
TGATCGCGCCGCAGAATGTTGTGGGAGTAAGTATCATTCCTCTGCTGGAA
AAGATGGCGAACAAGGCGGGCGGGCGGCCATTCATTCTCTTGAACCCCAG
CTTGAAAGACAGGCCTAGCGCTGGGGATGTGATGCAGGTCCGTGGTCGAG
AGGAGAGGATGGCTTTCGCCAAGACGTTCAAAACAGCGTTTGCGTTTGAG
ACACTGCATGAAAAAGGATTGTTTAAAATCAATGGAGCAGTGGGGAAAGC
CGCACATGATCAGCCTTGGATAAGGTATGTGCTTGTGGATAACCAGGCGG
GGCTCGAGAATGTGAATGAACGGAAGGAGATCTATGAACCCGTGCAGGTA
ACAGAGAGGGAGCCTATCGATTAA

Synonyms

Publications