jgi.p|Nanoce1779_2|526622, mRNA_3106 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|526622
Unique NamemRNA_3106
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length657
Alignment locationscaffold_7:668685..669341 -

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Properties
Property NameValue
TranscriptId526708
TrackFilteredModels2
ProteinId526622
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:668685..669341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|526622gene_3106Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3106CDS_3106Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|526622mRNA_3106-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3106 ID=mRNA_3106|Name=jgi.p|Nanoce1779_2|526622|organism=Nannochloropsis oceanica|type=mRNA|length=657bp
ATGGAAGAGCAGGGACAGCAGCATAAGGCAGTCGCCGCCGGGGGCTTGGG
CATTCACCCTTGGAAAGCACACGAAGCAAAACCAGGATGGGAATCGCGGT
TACGAGAAGCCTTGATCCGAAGACCAAGCCTCCTCGTGGGCGAAATTGGA
TTGGACAAGTCAAGAGAAGCAGACAAGACGGGTTGGGAGATCCAGCTGAA
AATGTTTGAAGAACAAATGGAACTTGCAGCCGAGCTGCGGCGGCCCGTCT
CCATACACTGCGTGCGCGCGTACGGCACCATCTATGACTGGCTCAAAAAG
CGACCGATGGCAACCGAATGCCCCCCTTCCTTGGCTTTCCACTCTTATAC
CGGCTCACCCGAAATGGCCGCTGCATTTCTAGCTCTGTCTCATCTGAAAG
GCAGCGTCTTCTTTGGCTTTTCCCTTTCTGTCTGTTTGCGGTCCCCGGCG
ACCGAAACTAGACTTTACAACGTCTTGAGCGTGCTTCCCCGGGAAAGTTT
GCTTTTGGAATCGGATTTGGACGATCGATGTGCTGTTCGGGTGGCGATGA
TGCGGATGTGTGAAGTGGTGGCACGAGCGACAGGAGTACAGAGACAGTCC
CTGGCAGAGATTACAACCAGAAATGCCGAAAGATTTTTGAGGCGCGCATT
AGTGTAG
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protein sequence of jgi.p|Nanoce1779_2|526622

>mRNA_3106-protein ID=mRNA_3106-protein|Name=jgi.p|Nanoce1779_2|526622|organism=Nannochloropsis oceanica|type=polypeptide|length=219bp
MEEQGQQHKAVAAGGLGIHPWKAHEAKPGWESRLREALIRRPSLLVGEIG
LDKSREADKTGWEIQLKMFEEQMELAAELRRPVSIHCVRAYGTIYDWLKK
RPMATECPPSLAFHSYTGSPEMAAAFLALSHLKGSVFFGFSLSVCLRSPA
TETRLYNVLSVLPRESLLLESDLDDRCAVRVAMMRMCEVVARATGVQRQS
LAEITTRNAERFLRRALV*
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mRNA from alignment at scaffold_7:668685..669341-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3106 ID=mRNA_3106|Name=jgi.p|Nanoce1779_2|526622|organism=Nannochloropsis oceanica|type=mRNA|length=657bp|location=Sequence derived from alignment at scaffold_7:668685..669341- (Nannochloropsis oceanica)
ATGGAAGAGCAGGGACAGCAGCATAAGGCAGTCGCCGCCGGGGGCTTGGG
CATTCACCCTTGGAAAGCACACGAAGCAAAACCAGGATGGGAATCGCGGT
TACGAGAAGCCTTGATCCGAAGACCAAGCCTCCTCGTGGGCGAAATTGGA
TTGGACAAGTCAAGAGAAGCAGACAAGACGGGTTGGGAGATCCAGCTGAA
AATGTTTGAAGAACAAATGGAACTTGCAGCCGAGCTGCGGCGGCCCGTCT
CCATACACTGCGTGCGCGCGTACGGCACCATCTATGACTGGCTCAAAAAG
CGACCGATGGCAACCGAATGCCCCCCTTCCTTGGCTTTCCACTCTTATAC
CGGCTCACCCGAAATGGCCGCTGCATTTCTAGCTCTGTCTCATCTGAAAG
GCAGCGTCTTCTTTGGCTTTTCCCTTTCTGTCTGTTTGCGGTCCCCGGCG
ACCGAAACTAGACTTTACAACGTCTTGAGCGTGCTTCCCCGGGAAAGTTT
GCTTTTGGAATCGGATTTGGACGATCGATGTGCTGTTCGGGTGGCGATGA
TGCGGATGTGTGAAGTGGTGGCACGAGCGACAGGAGTACAGAGACAGTCC
CTGGCAGAGATTACAACCAGAAATGCCGAAAGATTTTTGAGGCGCGCATT
AGTGTAG
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Coding sequence (CDS) from alignment at scaffold_7:668685..669341-

>mRNA_3106 ID=mRNA_3106|Name=jgi.p|Nanoce1779_2|526622|organism=Nannochloropsis oceanica|type=CDS|length=657bp|location=Sequence derived from alignment at scaffold_7:668685..669341- (Nannochloropsis oceanica)
ATGGAAGAGCAGGGACAGCAGCATAAGGCAGTCGCCGCCGGGGGCTTGGG
CATTCACCCTTGGAAAGCACACGAAGCAAAACCAGGATGGGAATCGCGGT
TACGAGAAGCCTTGATCCGAAGACCAAGCCTCCTCGTGGGCGAAATTGGA
TTGGACAAGTCAAGAGAAGCAGACAAGACGGGTTGGGAGATCCAGCTGAA
AATGTTTGAAGAACAAATGGAACTTGCAGCCGAGCTGCGGCGGCCCGTCT
CCATACACTGCGTGCGCGCGTACGGCACCATCTATGACTGGCTCAAAAAG
CGACCGATGGCAACCGAATGCCCCCCTTCCTTGGCTTTCCACTCTTATAC
CGGCTCACCCGAAATGGCCGCTGCATTTCTAGCTCTGTCTCATCTGAAAG
GCAGCGTCTTCTTTGGCTTTTCCCTTTCTGTCTGTTTGCGGTCCCCGGCG
ACCGAAACTAGACTTTACAACGTCTTGAGCGTGCTTCCCCGGGAAAGTTT
GCTTTTGGAATCGGATTTGGACGATCGATGTGCTGTTCGGGTGGCGATGA
TGCGGATGTGTGAAGTGGTGGCACGAGCGACAGGAGTACAGAGACAGTCC
CTGGCAGAGATTACAACCAGAAATGCCGAAAGATTTTTGAGGCGCGCATT
AGTGTAG
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Synonyms
Publications