jgi.p|Nanoce1779_2|397283, mRNA_3105 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|397283
Unique NamemRNA_3105
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1113
Alignment locationscaffold_7:667464..668576 -

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Properties
Property NameValue
TranscriptId397369
TrackFilteredModels2
ProteinId397283
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:667464..668576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|397283gene_3105Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|397283mRNA_3105-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3105CDS_3105Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3105 ID=mRNA_3105|Name=jgi.p|Nanoce1779_2|397283|organism=Nannochloropsis oceanica|type=mRNA|length=1113bp
CGCTCCTCAGTGGGTATGTCATTATTAATCGTGCTTTCTCTCATCTCCTC
ACCTCTCTCCTCTTCCCCTCCTCAACTTACTCTACAACCACAGGACTAAA
TCATTAAACATGACGGCCCATCACAATGTGACGTCGTCCTCCCTCCACCT
CTTCGAGACTGCCTGGCGAGCTTACCGCAAGCTGGTCGACGAAGATTACA
TGGAACACGCCGCACTAACTGCTGTCATCGCCGCAGTACTTCCCACCCTC
CTCCCCCCCGCCGGCTCTAGCACCGGCTGGATGGCTGACTTAGGGTGTGG
GGATCTCGGGCTATTGGCGCCCTTGCTTCGACCGTTACCCCTCGCGGGTT
TTATTGGAGTTGATGCCACAGCCGAGGTTCTCCCTCTGGCCGCCGGTCGA
TTGGGCGGAGGACGGGGAGAGGGCGTTGAGAGGGGTTATGGAGGGGCGCC
CTGGCCCTGTGAGTGGGTGTGTGCGGATCTGTTAGATTGGAGCGAGGAGA
GGAGAAAAGCCCTCCAGGAGGAAGGCGTGATAGATGCAAGCGGGGTGGAA
CCCAACAGCAGCAGCAGCAGCAGCGGCAGCACCAAGATATGTTCTTCCCC
CCTACCACGCATGCACGTAATCAGTTGCCTCTTCGCGCTGCATCACCTCT
CAGATCCACTCAAGCAACGAGCTTTAGCCGCTTTGCGTGCCTGCATGGCA
ACGGGGGGGAGTCTGCTGATAGCTGATGTCTTCCGGAAGGATGGGGAGGA
CCGAGAAGCATACTTGTCTAGATATAAGGCGAGAACTGTTGAGTGGGTGA
GGTTGGAGAAAGAGGAGCGGGAAGCTGTTCTAGAGCATGTCTGCACTAGT
GACTATCCAAGTGAGAGGAGCGAGTTTGTGGCGTTGGCCAGGAGGGCGGG
GTGGGGGAAGGCGAGGTGGTTGTGGGGAGGGATGCATGAGGCGGAGGCGG
TGCTGTTATTGCAATTTTGAGGAGGGAGGAGAAGGAGAAGAATGTGGACA
AGAGAAGGAGGAGGAAGATGAGAGATAAGAGGGGATTGGTAAATTATTGA
ATATATCAAACAGGAATATGCATGGCTTTAAGCATCTAGAGCACGTAAGT
GGTTTCTGACAAG
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protein sequence of jgi.p|Nanoce1779_2|397283

>mRNA_3105-protein ID=mRNA_3105-protein|Name=jgi.p|Nanoce1779_2|397283|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MTAHHNVTSSSLHLFETAWRAYRKLVDEDYMEHAALTAVIAAVLPTLLPP
AGSSTGWMADLGCGDLGLLAPLLRPLPLAGFIGVDATAEVLPLAAGRLGG
GRGEGVERGYGGAPWPCEWVCADLLDWSEERRKALQEEGVIDASGVEPNS
SSSSSGSTKICSSPLPRMHVISCLFALHHLSDPLKQRALAALRACMATGG
SLLIADVFRKDGEDREAYLSRYKARTVEWVRLEKEEREAVLEHVCTSDYP
SERSEFVALARRAGWGKARWLWGGMHEAEAVLLLQF*
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mRNA from alignment at scaffold_7:667464..668576-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3105 ID=mRNA_3105|Name=jgi.p|Nanoce1779_2|397283|organism=Nannochloropsis oceanica|type=mRNA|length=1113bp|location=Sequence derived from alignment at scaffold_7:667464..668576- (Nannochloropsis oceanica)
CGCTCCTCAGTGGGTATGTCATTATTAATCGTGCTTTCTCTCATCTCCTC
ACCTCTCTCCTCTTCCCCTCCTCAACTTACTCTACAACCACAGGACTAAA
TCATTAAACATGACGGCCCATCACAATGTGACGTCGTCCTCCCTCCACCT
CTTCGAGACTGCCTGGCGAGCTTACCGCAAGCTGGTCGACGAAGATTACA
TGGAACACGCCGCACTAACTGCTGTCATCGCCGCAGTACTTCCCACCCTC
CTCCCCCCCGCCGGCTCTAGCACCGGCTGGATGGCTGACTTAGGGTGTGG
GGATCTCGGGCTATTGGCGCCCTTGCTTCGACCGTTACCCCTCGCGGGTT
TTATTGGAGTTGATGCCACAGCCGAGGTTCTCCCTCTGGCCGCCGGTCGA
TTGGGCGGAGGACGGGGAGAGGGCGTTGAGAGGGGTTATGGAGGGGCGCC
CTGGCCCTGTGAGTGGGTGTGTGCGGATCTGTTAGATTGGAGCGAGGAGA
GGAGAAAAGCCCTCCAGGAGGAAGGCGTGATAGATGCAAGCGGGGTGGAA
CCCAACAGCAGCAGCAGCAGCAGCGGCAGCACCAAGATATGTTCTTCCCC
CCTACCACGCATGCACGTAATCAGTTGCCTCTTCGCGCTGCATCACCTCT
CAGATCCACTCAAGCAACGAGCTTTAGCCGCTTTGCGTGCCTGCATGGCA
ACGGGGGGGAGTCTGCTGATAGCTGATGTCTTCCGGAAGGATGGGGAGGA
CCGAGAAGCATACTTGTCTAGATATAAGGCGAGAACTGTTGAGTGGGTGA
GGTTGGAGAAAGAGGAGCGGGAAGCTGTTCTAGAGCATGTCTGCACTAGT
GACTATCCAAGTGAGAGGAGCGAGTTTGTGGCGTTGGCCAGGAGGGCGGG
GTGGGGGAAGGCGAGGTGGTTGTGGGGAGGGATGCATGAGGCGGAGGCGG
TGCTGTTATTGCAATTTTGAGGAGGGAGGAGAAGGAGAAGAATGTGGACA
AGAGAAGGAGGAGGAAGATGAGAGATAAGAGGGGATTGGTAAATTATTGA
ATATATCAAACAGGAATATGCATGGCTTTAAGCATCTAGAGCACGTAAGT
GGTTTCTGACAAG
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Coding sequence (CDS) from alignment at scaffold_7:667464..668576-

>mRNA_3105 ID=mRNA_3105|Name=jgi.p|Nanoce1779_2|397283|organism=Nannochloropsis oceanica|type=CDS|length=861bp|location=Sequence derived from alignment at scaffold_7:667464..668576- (Nannochloropsis oceanica)
ATGACGGCCCATCACAATGTGACGTCGTCCTCCCTCCACCTCTTCGAGAC
TGCCTGGCGAGCTTACCGCAAGCTGGTCGACGAAGATTACATGGAACACG
CCGCACTAACTGCTGTCATCGCCGCAGTACTTCCCACCCTCCTCCCCCCC
GCCGGCTCTAGCACCGGCTGGATGGCTGACTTAGGGTGTGGGGATCTCGG
GCTATTGGCGCCCTTGCTTCGACCGTTACCCCTCGCGGGTTTTATTGGAG
TTGATGCCACAGCCGAGGTTCTCCCTCTGGCCGCCGGTCGATTGGGCGGA
GGACGGGGAGAGGGCGTTGAGAGGGGTTATGGAGGGGCGCCCTGGCCCTG
TGAGTGGGTGTGTGCGGATCTGTTAGATTGGAGCGAGGAGAGGAGAAAAG
CCCTCCAGGAGGAAGGCGTGATAGATGCAAGCGGGGTGGAACCCAACAGC
AGCAGCAGCAGCAGCGGCAGCACCAAGATATGTTCTTCCCCCCTACCACG
CATGCACGTAATCAGTTGCCTCTTCGCGCTGCATCACCTCTCAGATCCAC
TCAAGCAACGAGCTTTAGCCGCTTTGCGTGCCTGCATGGCAACGGGGGGG
AGTCTGCTGATAGCTGATGTCTTCCGGAAGGATGGGGAGGACCGAGAAGC
ATACTTGTCTAGATATAAGGCGAGAACTGTTGAGTGGGTGAGGTTGGAGA
AAGAGGAGCGGGAAGCTGTTCTAGAGCATGTCTGCACTAGTGACTATCCA
AGTGAGAGGAGCGAGTTTGTGGCGTTGGCCAGGAGGGCGGGGTGGGGGAA
GGCGAGGTGGTTGTGGGGAGGGATGCATGAGGCGGAGGCGGTGCTGTTAT
TGCAATTTTGA
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Synonyms
Publications