jgi.p|Nanoce1779_2|584579, mRNA_3104 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584579
Unique Name	mRNA_3104
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2853
Alignment location	scaffold_7:664495..667347 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584665
Track	FilteredModels2
ProteinId	584579

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:664495..667347 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584579	gene_3104	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584579	mRNA_3104-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3104	CDS_3104	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:664495..667347+
coding sequence from alignment at scaffold_7:664495..667347+

mRNA sequence

>mRNA_3104 ID=mRNA_3104|Name=jgi.p|Nanoce1779_2|584579|organism=Nannochloropsis oceanica|type=mRNA|length=2853bp
GGGAGGAACCAAAGAGCAAAAAGGAGAACAACCTATAAATCCAAAGGAGT
CGCGAGAAGACCCACCAAAAATATGATGCAAACGTCTTCCTTTCAAATTC
CCTTTGATTTAAGCACTTACAGTACAGGTGAGCGAGATCGATTCGACAAA
TATTTACCCCGTTCTGTGATGATCTACTGTGTCGACTCAACATATCTCAG
ACGCTCACTTAGATGTCTGGGCATCACCCGTTTTCCACTATTTTACCACG
AGTTTACAGTCAAATGCATGTAATTATTCATAATCAGTCGATCACGTGAA
CTAATCATGTATTTCGAGTCAAACCTGGAGTAAGTGGTTCCAAGCTCGTG
TTTGGCAAGTATCAAATTGAAGAGAGGCTCTTTTGCTGGCATGTTGTTTT
TCTTACCCCTTTAAGCTCTTTCCTATTTCCGATTGCTTCTACGAAATCGA
AATAATTCCAATTTCGCACAGATGCACTTCACATCAGGCACATAGAAGAA
GGCTTTGCAAGTAGAGGGTACATCTCGTAGGAAAAAGTGTTGGGGAGTGT
TTCCCCCCCCCCCCCTCTCCTGTTTTCTGCTTTTTTCATTCGTGCTTTGT
AGTCTTCAAAAGAGATTTGAGGGTGAAAAGAACCTATGTCGATCGTGCTG
CGTTGGGAATGCTCCTCCCCTTCGACTGCTCGTGCTTAGGTAAAACGATT
GTGGCCCTCCGAGTCACGTTGCTTTGACCGAGCAAGCGCTTTTCGAAGTG
CAGAAAAATCTCATGCTTATTGTTGCAGCTCTCAGATAAATGTACACATA
AGCCATGATGTCTGCTTGTATACAGGAGTAGTAGCTATGGGAGTGTATCG
CGTGTCGTGTACGTGTGTTGTTTGGACCCGGCACCGGCATTTAGGCCGGG
ACACCTCGGGTGCGGGGAGGGGCACCTGAGAAGAGGGTAGTCTCTTTCCT
GACTACCACCACCACGGAATTTGCTTGATTGATTTGCATGTTTCTTGTCT
CTAACCGCACACGCACACTGTGCCCGCCGCACAAGGTTTACCCTGAGGTA
TCACAAATGTGACGAATGCCGGAGCGTACTGCGATGAAGGGCGGTCTTGC
TTCTTCTCAAACCCACATGCCTCACCGAACATACACAGGCTTCTTTCAGT
CCCGACCTTGCCTGCCTGCCTTCGGCCCCAGAATCCTCTAGAGCTCGAGA
TAGATGGAGCTGAAGGAAGTGGCACGCGCGGCGATCCATGGCCTCGTACA
ACGCGGCGCCAGGAAGCAGCAACGGGAACTTTATCCGCTTCGAGCTGCAG
AACCCCGCAAGCTTCAGGCAGATCAGTCGGTATATGAGCAACTAGAGGAG
GAAGGGTGGGGACTGGTACCAGCAGTGGTACCGGTGGGGTATGCAACTGG
GAAAGGAGATGATAATTATCATGATGATGACAGTGGTGGTGGTTATAGAG
TCAAACGCAAGCGATCCAATAACAACCGTAGAGACAAGGAAGGATGCGAG
GACGACGACGAGGAGGAGGACGACGAGGACAGAAGCATGTTAAGCAAGGC
GGGCATCCGCGGTGGTCGACCTGGAAGTCTAACGACTTGGGAGCTGAACC
ACTATAGGCGACGGCATTTCCTGATGCCACAGGGAGCGTGGCCTATCCTG
CCTTCTGCATCGCCAACGCCGCCACCAGTGATCGAGTTACCGCAAGGAAA
CGGCTATTGTCGTCCTCCTCCTCCGGAGGCGCTGCCTGACAACCTAGGTA
TTGACGGCGTGCAGCACTATATCCCACGTATCCGGGTCTCGGGCGGTGCG
CGGAGACAGAAAAATAAAAGAGCACTAGAGGCTGCAGAAACGCAGTTGGA
ATGGCTTCCGTTTGAGAACTTGGCGATTCAGACGGAAAAGAGGGAGGACG
ACAACTACCCGATACCTTCTCCTGTACTTGTCCGTGCATTGGATGCGGCG
ATTGTGCGGCAGCTGGTAGGGGTAGTTCAAGCCCATCAAATGGAAGAAGA
GGACGAGTTTGGGGATAAAGAGGAGGATGAGAAGGAGGACAAGAATGAGA
ATGAGGAGGAAGATCGAGAACGGAAGACGAAGAGCACAGTTGAGGTGCGA
CTCTATGATTTGCTTGAGTCAGCGTTGGGCACGCTGGAGGAGGACAAAGA
CGAGGGTGGGGGGGAGGACGACTACAACGACGGCGAAGACGGCACCAAAA
ACCTGATCCGAAAACGAATGGAAGCTGTGCACGTCCTGCGCCGATGCTTA
GGGCGAGAGACTGAGCGGTTGATAGACGGGCTCCTGGGTCATGTATTGGC
GTGTTGGTCCGAGCGCTCTCAAGCGCAACGATCGGAGGAAGGGTATCTAG
CCTGGTTACGGCGACAGCGGGCCTGCAACTTGATCGACCCCCGTAATAAT
GTTTCCTTGGAAGATAGGGTGGGGTTTGCGGGTCAGGGTTTGATTTTAGG
GGACTGGCATGATGTTTTGGGGGTGGTGGAGGAAAGGATGCAGGTGGATA
TGGCGGCGGCGAAGGGCAGGGAGGAGGGACGGAGAAAGGCCGAGAAGGTA
ACGTACATGGAAGCGAAGAGGCAGATGAAAGAAAAAATGAAGTATTCAAA
AAGTGGGAGACGGAAATTGAACGAACATGGTCGGAAGTTGCGAACGAGGT
TGGATGAGAATGAGGAGCAAGAGGAGTTAGAGGAGGAGAAAGCGAGGGAG
GAAGAAGGGGAGGTCAACCTTTTAAGGCCTGCGTTCGATCCGGGGACGCT
CAGCCGATCGCGAGCGCGGTTGGAGAGATTGTTTTGGGCCGGGAAGGGGG
CATTGCCACCAGAGGAAGGCTTGTAAAGGGATGGGATAAATGAATTCTTA
CTT

protein sequence of jgi.p|Nanoce1779_2|584579

>mRNA_3104-protein ID=mRNA_3104-protein|Name=jgi.p|Nanoce1779_2|584579|organism=Nannochloropsis oceanica|type=polypeptide|length=541bp
MELKEVARAAIHGLVQRGARKQQRELYPLRAAEPRKLQADQSVYEQLEEE
GWGLVPAVVPVGYATGKGDDNYHDDDSGGGYRVKRKRSNNNRRDKEGCED
DDEEEDDEDRSMLSKAGIRGGRPGSLTTWELNHYRRRHFLMPQGAWPILP
SASPTPPPVIELPQGNGYCRPPPPEALPDNLGIDGVQHYIPRIRVSGGAR
RQKNKRALEAAETQLEWLPFENLAIQTEKREDDNYPIPSPVLVRALDAAI
VRQLVGVVQAHQMEEEDEFGDKEEDEKEDKNENEEEDRERKTKSTVEVRL
YDLLESALGTLEEDKDEGGGEDDYNDGEDGTKNLIRKRMEAVHVLRRCLG
RETERLIDGLLGHVLACWSERSQAQRSEEGYLAWLRRQRACNLIDPRNNV
SLEDRVGFAGQGLILGDWHDVLGVVEERMQVDMAAAKGREEGRRKAEKVT
YMEAKRQMKEKMKYSKSGRRKLNEHGRKLRTRLDENEEQEELEEEKAREE
EGEVNLLRPAFDPGTLSRSRARLERLFWAGKGALPPEEGL*

mRNA from alignment at scaffold_7:664495..667347+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3104 ID=mRNA_3104|Name=jgi.p|Nanoce1779_2|584579|organism=Nannochloropsis oceanica|type=mRNA|length=2853bp|location=Sequence derived from alignment at scaffold_7:664495..667347+ (Nannochloropsis oceanica)
GGGAGGAACCAAAGAGCAAAAAGGAGAACAACCTATAAATCCAAAGGAGT
CGCGAGAAGACCCACCAAAAATATGATGCAAACGTCTTCCTTTCAAATTC
CCTTTGATTTAAGCACTTACAGTACAGGTGAGCGAGATCGATTCGACAAA
TATTTACCCCGTTCTGTGATGATCTACTGTGTCGACTCAACATATCTCAG
ACGCTCACTTAGATGTCTGGGCATCACCCGTTTTCCACTATTTTACCACG
AGTTTACAGTCAAATGCATGTAATTATTCATAATCAGTCGATCACGTGAA
CTAATCATGTATTTCGAGTCAAACCTGGAGTAAGTGGTTCCAAGCTCGTG
TTTGGCAAGTATCAAATTGAAGAGAGGCTCTTTTGCTGGCATGTTGTTTT
TCTTACCCCTTTAAGCTCTTTCCTATTTCCGATTGCTTCTACGAAATCGA
AATAATTCCAATTTCGCACAGATGCACTTCACATCAGGCACATAGAAGAA
GGCTTTGCAAGTAGAGGGTACATCTCGTAGGAAAAAGTGTTGGGGAGTGT
TTCCCCCCCCCCCCCTCTCCTGTTTTCTGCTTTTTTCATTCGTGCTTTGT
AGTCTTCAAAAGAGATTTGAGGGTGAAAAGAACCTATGTCGATCGTGCTG
CGTTGGGAATGCTCCTCCCCTTCGACTGCTCGTGCTTAGGTAAAACGATT
GTGGCCCTCCGAGTCACGTTGCTTTGACCGAGCAAGCGCTTTTCGAAGTG
CAGAAAAATCTCATGCTTATTGTTGCAGCTCTCAGATAAATGTACACATA
AGCCATGATGTCTGCTTGTATACAGGAGTAGTAGCTATGGGAGTGTATCG
CGTGTCGTGTACGTGTGTTGTTTGGACCCGGCACCGGCATTTAGGCCGGG
ACACCTCGGGTGCGGGGAGGGGCACCTGAGAAGAGGGTAGTCTCTTTCCT
GACTACCACCACCACGGAATTTGCTTGATTGATTTGCATGTTTCTTGTCT
CTAACCGCACACGCACACTGTGCCCGCCGCACAAGGTTTACCCTGAGGTA
TCACAAATGTGACGAATGCCGGAGCGTACTGCGATGAAGGGCGGTCTTGC
TTCTTCTCAAACCCACATGCCTCACCGAACATACACAGGCTTCTTTCAGT
CCCGACCTTGCCTGCCTGCCTTCGGCCCCAGAATCCTCTAGAGCTCGAGA
TAGATGGAGCTGAAGGAAGTGGCACGCGCGGCGATCCATGGCCTCGTACA
ACGCGGCGCCAGGAAGCAGCAACGGGAACTTTATCCGCTTCGAGCTGCAG
AACCCCGCAAGCTTCAGGCAGATCAGTCGGTATATGAGCAACTAGAGGAG
GAAGGGTGGGGACTGGTACCAGCAGTGGTACCGGTGGGGTATGCAACTGG
GAAAGGAGATGATAATTATCATGATGATGACAGTGGTGGTGGTTATAGAG
TCAAACGCAAGCGATCCAATAACAACCGTAGAGACAAGGAAGGATGCGAG
GACGACGACGAGGAGGAGGACGACGAGGACAGAAGCATGTTAAGCAAGGC
GGGCATCCGCGGTGGTCGACCTGGAAGTCTAACGACTTGGGAGCTGAACC
ACTATAGGCGACGGCATTTCCTGATGCCACAGGGAGCGTGGCCTATCCTG
CCTTCTGCATCGCCAACGCCGCCACCAGTGATCGAGTTACCGCAAGGAAA
CGGCTATTGTCGTCCTCCTCCTCCGGAGGCGCTGCCTGACAACCTAGGTA
TTGACGGCGTGCAGCACTATATCCCACGTATCCGGGTCTCGGGCGGTGCG
CGGAGACAGAAAAATAAAAGAGCACTAGAGGCTGCAGAAACGCAGTTGGA
ATGGCTTCCGTTTGAGAACTTGGCGATTCAGACGGAAAAGAGGGAGGACG
ACAACTACCCGATACCTTCTCCTGTACTTGTCCGTGCATTGGATGCGGCG
ATTGTGCGGCAGCTGGTAGGGGTAGTTCAAGCCCATCAAATGGAAGAAGA
GGACGAGTTTGGGGATAAAGAGGAGGATGAGAAGGAGGACAAGAATGAGA
ATGAGGAGGAAGATCGAGAACGGAAGACGAAGAGCACAGTTGAGGTGCGA
CTCTATGATTTGCTTGAGTCAGCGTTGGGCACGCTGGAGGAGGACAAAGA
CGAGGGTGGGGGGGAGGACGACTACAACGACGGCGAAGACGGCACCAAAA
ACCTGATCCGAAAACGAATGGAAGCTGTGCACGTCCTGCGCCGATGCTTA
GGGCGAGAGACTGAGCGGTTGATAGACGGGCTCCTGGGTCATGTATTGGC
GTGTTGGTCCGAGCGCTCTCAAGCGCAACGATCGGAGGAAGGGTATCTAG
CCTGGTTACGGCGACAGCGGGCCTGCAACTTGATCGACCCCCGTAATAAT
GTTTCCTTGGAAGATAGGGTGGGGTTTGCGGGTCAGGGTTTGATTTTAGG
GGACTGGCATGATGTTTTGGGGGTGGTGGAGGAAAGGATGCAGGTGGATA
TGGCGGCGGCGAAGGGCAGGGAGGAGGGACGGAGAAAGGCCGAGAAGGTA
ACGTACATGGAAGCGAAGAGGCAGATGAAAGAAAAAATGAAGTATTCAAA
AAGTGGGAGACGGAAATTGAACGAACATGGTCGGAAGTTGCGAACGAGGT
TGGATGAGAATGAGGAGCAAGAGGAGTTAGAGGAGGAGAAAGCGAGGGAG
GAAGAAGGGGAGGTCAACCTTTTAAGGCCTGCGTTCGATCCGGGGACGCT
CAGCCGATCGCGAGCGCGGTTGGAGAGATTGTTTTGGGCCGGGAAGGGGG
CATTGCCACCAGAGGAAGGCTTGTAAAGGGATGGGATAAATGAATTCTTA
CTT

Coding sequence (CDS) from alignment at scaffold_7:664495..667347+

>mRNA_3104 ID=mRNA_3104|Name=jgi.p|Nanoce1779_2|584579|organism=Nannochloropsis oceanica|type=CDS|length=1623bp|location=Sequence derived from alignment at scaffold_7:664495..667347+ (Nannochloropsis oceanica)
ATGGAGCTGAAGGAAGTGGCACGCGCGGCGATCCATGGCCTCGTACAACG
CGGCGCCAGGAAGCAGCAACGGGAACTTTATCCGCTTCGAGCTGCAGAAC
CCCGCAAGCTTCAGGCAGATCAGTCGGTATATGAGCAACTAGAGGAGGAA
GGGTGGGGACTGGTACCAGCAGTGGTACCGGTGGGGTATGCAACTGGGAA
AGGAGATGATAATTATCATGATGATGACAGTGGTGGTGGTTATAGAGTCA
AACGCAAGCGATCCAATAACAACCGTAGAGACAAGGAAGGATGCGAGGAC
GACGACGAGGAGGAGGACGACGAGGACAGAAGCATGTTAAGCAAGGCGGG
CATCCGCGGTGGTCGACCTGGAAGTCTAACGACTTGGGAGCTGAACCACT
ATAGGCGACGGCATTTCCTGATGCCACAGGGAGCGTGGCCTATCCTGCCT
TCTGCATCGCCAACGCCGCCACCAGTGATCGAGTTACCGCAAGGAAACGG
CTATTGTCGTCCTCCTCCTCCGGAGGCGCTGCCTGACAACCTAGGTATTG
ACGGCGTGCAGCACTATATCCCACGTATCCGGGTCTCGGGCGGTGCGCGG
AGACAGAAAAATAAAAGAGCACTAGAGGCTGCAGAAACGCAGTTGGAATG
GCTTCCGTTTGAGAACTTGGCGATTCAGACGGAAAAGAGGGAGGACGACA
ACTACCCGATACCTTCTCCTGTACTTGTCCGTGCATTGGATGCGGCGATT
GTGCGGCAGCTGGTAGGGGTAGTTCAAGCCCATCAAATGGAAGAAGAGGA
CGAGTTTGGGGATAAAGAGGAGGATGAGAAGGAGGACAAGAATGAGAATG
AGGAGGAAGATCGAGAACGGAAGACGAAGAGCACAGTTGAGGTGCGACTC
TATGATTTGCTTGAGTCAGCGTTGGGCACGCTGGAGGAGGACAAAGACGA
GGGTGGGGGGGAGGACGACTACAACGACGGCGAAGACGGCACCAAAAACC
TGATCCGAAAACGAATGGAAGCTGTGCACGTCCTGCGCCGATGCTTAGGG
CGAGAGACTGAGCGGTTGATAGACGGGCTCCTGGGTCATGTATTGGCGTG
TTGGTCCGAGCGCTCTCAAGCGCAACGATCGGAGGAAGGGTATCTAGCCT
GGTTACGGCGACAGCGGGCCTGCAACTTGATCGACCCCCGTAATAATGTT
TCCTTGGAAGATAGGGTGGGGTTTGCGGGTCAGGGTTTGATTTTAGGGGA
CTGGCATGATGTTTTGGGGGTGGTGGAGGAAAGGATGCAGGTGGATATGG
CGGCGGCGAAGGGCAGGGAGGAGGGACGGAGAAAGGCCGAGAAGGTAACG
TACATGGAAGCGAAGAGGCAGATGAAAGAAAAAATGAAGTATTCAAAAAG
TGGGAGACGGAAATTGAACGAACATGGTCGGAAGTTGCGAACGAGGTTGG
ATGAGAATGAGGAGCAAGAGGAGTTAGAGGAGGAGAAAGCGAGGGAGGAA
GAAGGGGAGGTCAACCTTTTAAGGCCTGCGTTCGATCCGGGGACGCTCAG
CCGATCGCGAGCGCGGTTGGAGAGATTGTTTTGGGCCGGGAAGGGGGCAT
TGCCACCAGAGGAAGGCTTGTAA

Synonyms

Publications