jgi.p|Nanoce1779_2|584577, mRNA_3103 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584577
Unique NamemRNA_3103
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length731
Alignment locationscaffold_7:663803..664533 -

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Properties
Property NameValue
TranscriptId584663
TrackFilteredModels2
ProteinId584577
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:663803..664533 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584577gene_3103Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584577mRNA_3103-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3103CDS_3103Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3103 ID=mRNA_3103|Name=jgi.p|Nanoce1779_2|584577|organism=Nannochloropsis oceanica|type=mRNA|length=731bp
TTTATAGGTTGTTCTCCTTTTTGCTCTTTGGTTCCTCCCTTCGCTAATGT
AAAAACCGTTCACTCGATAAGGGGGTGAACGCGCTCAACGCACTACCTCC
TCTAGGGGAAAATGAAAAGTGGCACTTTCCGTTCCCATTCAAGATAAAAT
CATCTCCCTCTCCTTCTCGCCTTTGCAAAACTTTCCCGTTCCTTTAGTTG
TCATTTTAGCGCACTCACACCTGTCCCGCTTTGTTATTATTGCCTCTTCT
CCACTCTCTGTCTCTTTTTCTTTCTCTTCCCCAAAACAGGATTAAAATAT
TCTTCATGGAACGCTGTGACGCTATTCCCCTTTCCCTCCCTGCGACCCGT
CCGGCATGTACTACCCCCTTTCCTCACTTTGTCTCTTTTCTCTAACTTTC
CTGCCATTCATTGGTCATCTTCCCTTTTTTGCTTCACTTTTTTGGCTGTT
CTTGTTGTTGATTCTTGTTGCTGATGTTGCTGTTGAAGTATTTTGTTATT
CGTCTTTCCTTACGATTGTTTTCTCATGAATGCAGGACATAGTAGAATCA
ATATGCTGTTCATGCTGCTATTACTACTGCTGCTGCTGTTGCCGGTGTCT
CCTGAATCATTGCGCACTTCCTTTCGCTTCGTTGTCCTGAATGAATCACG
GAGCAGATAATTTCTGCTGCTCGTCACCGCTGTCTTTCTCCCTCCGTCTC
TCCGTCCCTCACGTCGCCCTTCCCTCCATCA
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protein sequence of jgi.p|Nanoce1779_2|584577

>mRNA_3103-protein ID=mRNA_3103-protein|Name=jgi.p|Nanoce1779_2|584577|organism=Nannochloropsis oceanica|type=polypeptide|length=58bp
MYYPLSSLCLFSLTFLPFIGHLPFFASLFWLFLLLILVADVAVEVFCYSS
FLTIVFS*
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mRNA from alignment at scaffold_7:663803..664533-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3103 ID=mRNA_3103|Name=jgi.p|Nanoce1779_2|584577|organism=Nannochloropsis oceanica|type=mRNA|length=731bp|location=Sequence derived from alignment at scaffold_7:663803..664533- (Nannochloropsis oceanica)
TTTATAGGTTGTTCTCCTTTTTGCTCTTTGGTTCCTCCCTTCGCTAATGT
AAAAACCGTTCACTCGATAAGGGGGTGAACGCGCTCAACGCACTACCTCC
TCTAGGGGAAAATGAAAAGTGGCACTTTCCGTTCCCATTCAAGATAAAAT
CATCTCCCTCTCCTTCTCGCCTTTGCAAAACTTTCCCGTTCCTTTAGTTG
TCATTTTAGCGCACTCACACCTGTCCCGCTTTGTTATTATTGCCTCTTCT
CCACTCTCTGTCTCTTTTTCTTTCTCTTCCCCAAAACAGGATTAAAATAT
TCTTCATGGAACGCTGTGACGCTATTCCCCTTTCCCTCCCTGCGACCCGT
CCGGCATGTACTACCCCCTTTCCTCACTTTGTCTCTTTTCTCTAACTTTC
CTGCCATTCATTGGTCATCTTCCCTTTTTTGCTTCACTTTTTTGGCTGTT
CTTGTTGTTGATTCTTGTTGCTGATGTTGCTGTTGAAGTATTTTGTTATT
CGTCTTTCCTTACGATTGTTTTCTCATGAATGCAGGACATAGTAGAATCA
ATATGCTGTTCATGCTGCTATTACTACTGCTGCTGCTGTTGCCGGTGTCT
CCTGAATCATTGCGCACTTCCTTTCGCTTCGTTGTCCTGAATGAATCACG
GAGCAGATAATTTCTGCTGCTCGTCACCGCTGTCTTTCTCCCTCCGTCTC
TCCGTCCCTCACGTCGCCCTTCCCTCCATCA
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Coding sequence (CDS) from alignment at scaffold_7:663803..664533-

>mRNA_3103 ID=mRNA_3103|Name=jgi.p|Nanoce1779_2|584577|organism=Nannochloropsis oceanica|type=CDS|length=174bp|location=Sequence derived from alignment at scaffold_7:663803..664533- (Nannochloropsis oceanica)
ATGTACTACCCCCTTTCCTCACTTTGTCTCTTTTCTCTAACTTTCCTGCC
ATTCATTGGTCATCTTCCCTTTTTTGCTTCACTTTTTTGGCTGTTCTTGT
TGTTGATTCTTGTTGCTGATGTTGCTGTTGAAGTATTTTGTTATTCGTCT
TTCCTTACGATTGTTTTCTCATGA
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Synonyms
Publications