jgi.p|Nanoce1779_2|584568, mRNA_3101 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584568
Unique NamemRNA_3101
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length706
Alignment locationscaffold_7:659277..660236 -

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Properties
Property NameValue
TranscriptId584654
TrackFilteredModels2
ProteinId584568
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:659277..660236 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584568gene_3101Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584568mRNA_3101-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3101CDS_3101Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3101 ID=mRNA_3101|Name=jgi.p|Nanoce1779_2|584568|organism=Nannochloropsis oceanica|type=mRNA|length=706bp
AGGTACGATGGCCGCCATGCTTACCTGGGCCTCGTCCAGAATACAGCAGC
TTGTCCGGGTCCCGGCAGCAGTGTCGGTGGTTCAGACTTCCACAACCACT
TGCACCAACATCCCCACTGTCGCCCAGCGCTTCTCTACTGCTGCCGTCGA
GCCTTCAACTGCACCAGAAGATAGCGCGGCCCTCCCTCTTCATGATGCTG
ATGCCACTGTCGACGGCTCATCCCTTCCTCCCTCCCTCAACCCGCGCCTG
GACGCCTTGAACCGTGCCTATGCGACGGGCCGTCGTAAGACAAGCGTGGC
ACGAGTGTGGTTAAAGGCAGGACAGGGACACATACGAGTGAATGGAAAGG
AAGTCTATGAGTACTTCGGGCGGGTCGCGTACATGGACAAGTTGGTGGAG
CCCTTTGTGGTGACTGGGACAGCGGGCGATTTTGACGTTATGTGCACGGT
GAAGGGAGGAGGGACAACTGGCCAGGTGGGTGCGGTGGCGCTGGGGATCT
CGAGGGCGTTGGAGGTCTGGGACTCGGCGCATCGGCCGCCGTTGGCGAAA
GAAAGTCTGTTTACCCGGGATTCAAGGGCGGTGGAGAGGAAGAAGCCAGG
GCAGCCCAAGGCAAGGAAGAAGGATCAGTGGGTCAAGCGGTAGGGAGGGA
ATGAAAAGGTAAACAGAAGAGTAGAAGAAGGAAGAGGAGGAGGATGAGGA
AGAGGA
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protein sequence of jgi.p|Nanoce1779_2|584568

>mRNA_3101-protein ID=mRNA_3101-protein|Name=jgi.p|Nanoce1779_2|584568|organism=Nannochloropsis oceanica|type=polypeptide|length=212bp
MAAMLTWASSRIQQLVRVPAAVSVVQTSTTTCTNIPTVAQRFSTAAVEPS
TAPEDSAALPLHDADATVDGSSLPPSLNPRLDALNRAYATGRRKTSVARV
WLKAGQGHIRVNGKEVYEYFGRVAYMDKLVEPFVVTGTAGDFDVMCTVKG
GGTTGQVGAVALGISRALEVWDSAHRPPLAKESLFTRDSRAVERKKPGQP
KARKKDQWVKR*
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mRNA from alignment at scaffold_7:659277..660236-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3101 ID=mRNA_3101|Name=jgi.p|Nanoce1779_2|584568|organism=Nannochloropsis oceanica|type=mRNA|length=960bp|location=Sequence derived from alignment at scaffold_7:659277..660236- (Nannochloropsis oceanica)
AGGTACGATGGCCGCCATGCTTACCTGGGCCTCGTCCAGAATACAGCAGC
TTGTCCGGGTCCCGGCAGCAGTGTCGGTGGTTCAGGTAAGAAGGTTTTTG
GTGGAACGTGGTAGATGCACTCAGGAAAGGAGGTGGTGATAATGCGCCGC
CGCTGAGTGAAAGCGCTGCGTTAGAGAGAGGCATCCCTCGATGCCCCTGT
GCCTCAGTTGGGTTTCTTGGAATGTGTGTGGCAAGGGAGCATAGAGAGGC
TTCCTTTCCAGCAAGTCGTCCCATCTCTCTGAAGTGTGAAGCCACAACTC
ATACCAACTTACCTCGCCACCCACTTTTTCTTGACGTAGACTTCCACAAC
CACTTGCACCAACATCCCCACTGTCGCCCAGCGCTTCTCTACTGCTGCCG
TCGAGCCTTCAACTGCACCAGAAGATAGCGCGGCCCTCCCTCTTCATGAT
GCTGATGCCACTGTCGACGGCTCATCCCTTCCTCCCTCCCTCAACCCGCG
CCTGGACGCCTTGAACCGTGCCTATGCGACGGGCCGTCGTAAGACAAGCG
TGGCACGAGTGTGGTTAAAGGCAGGACAGGGACACATACGAGTGAATGGA
AAGGAAGTCTATGAGTACTTCGGGCGGGTCGCGTACATGGACAAGTTGGT
GGAGCCCTTTGTGGTGACTGGGACAGCGGGCGATTTTGACGTTATGTGCA
CGGTGAAGGGAGGAGGGACAACTGGCCAGGTGGGTGCGGTGGCGCTGGGG
ATCTCGAGGGCGTTGGAGGTCTGGGACTCGGCGCATCGGCCGCCGTTGGC
GAAAGAAAGTCTGTTTACCCGGGATTCAAGGGCGGTGGAGAGGAAGAAGC
CAGGGCAGCCCAAGGCAAGGAAGAAGGATCAGTGGGTCAAGCGGTAGGGA
GGGAATGAAAAGGTAAACAGAAGAGTAGAAGAAGGAAGAGGAGGAGGATG
AGGAAGAGGA
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Coding sequence (CDS) from alignment at scaffold_7:659277..660236-

>mRNA_3101 ID=mRNA_3101|Name=jgi.p|Nanoce1779_2|584568|organism=Nannochloropsis oceanica|type=CDS|length=1272bp|location=Sequence derived from alignment at scaffold_7:659277..660236- (Nannochloropsis oceanica)
ACTTCCACAACCACTTGCACCAACATCCCCACTGTCGCCCAGCGCTTCTC
TACTGCTGCCGTCGAGCCTTCAACTGCACCAGAAGATAGCGCGGCCCTCC
CTCTTCATGATGCTGATGCCACTGTCGACGGCTCATCCCTTCCTCCCTCC
CTCAACCCGCGCCTGGACGCCTTGAACCGTGCCTATGCGACGGGCCGTCG
TAAGACAAGCGTGGCACGAGTGTGGTTAAAGGCAGGACAGGGACACATAC
GAGTGAATGGAAAGGAAGTCTATGAGTACTTCGGGCGGGTCGCGTACATG
GACAAGTTGGTGGAGCCCTTTGTGGTGACTGGGACAGCGGGCGATTTTGA
CGTTATGTGCACGGTGAAGGGAGGAGGGACAACTGGCCAGGTGGGTGCGG
TGGCGCTGGGGATCTCGAGGGCGTTGGAGGTCTGGGACTCGGCGCATCGG
CCGCCGTTGGCGAAAGAAAGTCTGTTTACCCGGGATTCAAGGGCGGTGGA
GAGGAAGAAGCCAGGGCAGCCCAAGGCAAGGAAGAAGGATCAGTGGGTCA
AGCGGTAGATGGCCGCCATGCTTACCTGGGCCTCGTCCAGAATACAGCAG
CTTGTCCGGGTCCCGGCAGCAGTGTCGGTGGTTCAGACTTCCACAACCAC
TTGCACCAACATCCCCACTGTCGCCCAGCGCTTCTCTACTGCTGCCGTCG
AGCCTTCAACTGCACCAGAAGATAGCGCGGCCCTCCCTCTTCATGATGCT
GATGCCACTGTCGACGGCTCATCCCTTCCTCCCTCCCTCAACCCGCGCCT
GGACGCCTTGAACCGTGCCTATGCGACGGGCCGTCGTAAGACAAGCGTGG
CACGAGTGTGGTTAAAGGCAGGACAGGGACACATACGAGTGAATGGAAAG
GAAGTCTATGAGTACTTCGGGCGGGTCGCGTACATGGACAAGTTGGTGGA
GCCCTTTGTGGTGACTGGGACAGCGGGCGATTTTGACGTTATGTGCACGG
TGAAGGGAGGAGGGACAACTGGCCAGGTGGGTGCGGTGGCGCTGGGGATC
TCGAGGGCGTTGGAGGTCTGGGACTCGGCGCATCGGCCGCCGTTGGCGAA
AGAAAGTCTGTTTACCCGGGATTCAAGGGCGGTGGAGAGGAAGAAGCCAG
GGCAGCCCAAGGCAAGGAAGAAGGATCAGTGGGTCAAGCGGTAGATGGCC
GCCATGCTTACCTGGGCCTCGTCCAGAATACAGCAGCTTGTCCGGGTCCC
GGCAGCAGTGTCGGTGGTTCAG
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Synonyms
Publications