jgi.p|Nanoce1779_2|584567, mRNA_3100 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584567
Unique NamemRNA_3100
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length633
Alignment locationscaffold_7:658699..659331 -

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Properties
Property NameValue
TranscriptId584653
TrackFilteredModels2
ProteinId584567
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:658699..659331 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584567gene_3100Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584567mRNA_3100-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3100CDS_3100Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3100 ID=mRNA_3100|Name=jgi.p|Nanoce1779_2|584567|organism=Nannochloropsis oceanica|type=mRNA|length=633bp
TGAAAAGGTAAACAGAAGAGTAGAAGAAGGAAGAGGAGGAGGATGAGGAA
GAGGAGGGTGAAAAGAGGAGGAGGAGAAGGAAGAGGAGGAGGAGGAAGAG
GAGAAAGGAGGAAGGCGGGTTAGAATAGAAAGGTGTGGGAGATGATGGAA
ATACTTATGAAAAGAAAGGAGGAGGCGAGCCACGTGATGGTTTCTGCAGG
TGTGCTAACTTTTTTGAAAGGCTGTTCCTTTCCAGTTTTACATACGCTTT
CACTTCCTGTATTTTTTTATTTCCTGGCGGGATCGGTCTTGCGTGCTTCT
GCTGGTATTGCCGCTGCAATTGCACATTACCTGCTGCTTGACCGACGCTT
TATTTCTATGCACAACTTTCTTTTCGTCTTCTTCACCCCTCCCCTCTTCT
TCATTTTCATTCATTTTTTGCTTGCCGGTACTTCTGCTTGGCCTGATACT
GATGCGGCTGCTGCTATGCATGCGTGCGCCTGCTTGTTCGATTCCCTTTC
CTTGTCACTCGTGCCAATGGCAGGCTAAGGTCGACCTTATTGGTCGCGGG
CTGCTTTTAACTTCCTTCTCCTTGTCTTTTCATATACCGTTTGTCGGGTG
CTTATCATTTTTCGTCTTCTCTCTTCTCCCCCC
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protein sequence of jgi.p|Nanoce1779_2|584567

>mRNA_3100-protein ID=mRNA_3100-protein|Name=jgi.p|Nanoce1779_2|584567|organism=Nannochloropsis oceanica|type=polypeptide|length=129bp
MMEILMKRKEEASHVMVSAGVLTFLKGCSFPVLHTLSLPVFFYFLAGSVL
RASAGIAAAIAHYLLLDRRFISMHNFLFVFFTPPLFFIFIHFLLAGTSAW
PDTDAAAAMHACACLFDSLSLSLVPMAG*
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mRNA from alignment at scaffold_7:658699..659331-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3100 ID=mRNA_3100|Name=jgi.p|Nanoce1779_2|584567|organism=Nannochloropsis oceanica|type=mRNA|length=633bp|location=Sequence derived from alignment at scaffold_7:658699..659331- (Nannochloropsis oceanica)
TGAAAAGGTAAACAGAAGAGTAGAAGAAGGAAGAGGAGGAGGATGAGGAA
GAGGAGGGTGAAAAGAGGAGGAGGAGAAGGAAGAGGAGGAGGAGGAAGAG
GAGAAAGGAGGAAGGCGGGTTAGAATAGAAAGGTGTGGGAGATGATGGAA
ATACTTATGAAAAGAAAGGAGGAGGCGAGCCACGTGATGGTTTCTGCAGG
TGTGCTAACTTTTTTGAAAGGCTGTTCCTTTCCAGTTTTACATACGCTTT
CACTTCCTGTATTTTTTTATTTCCTGGCGGGATCGGTCTTGCGTGCTTCT
GCTGGTATTGCCGCTGCAATTGCACATTACCTGCTGCTTGACCGACGCTT
TATTTCTATGCACAACTTTCTTTTCGTCTTCTTCACCCCTCCCCTCTTCT
TCATTTTCATTCATTTTTTGCTTGCCGGTACTTCTGCTTGGCCTGATACT
GATGCGGCTGCTGCTATGCATGCGTGCGCCTGCTTGTTCGATTCCCTTTC
CTTGTCACTCGTGCCAATGGCAGGCTAAGGTCGACCTTATTGGTCGCGGG
CTGCTTTTAACTTCCTTCTCCTTGTCTTTTCATATACCGTTTGTCGGGTG
CTTATCATTTTTCGTCTTCTCTCTTCTCCCCCC
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Coding sequence (CDS) from alignment at scaffold_7:658699..659331-

>mRNA_3100 ID=mRNA_3100|Name=jgi.p|Nanoce1779_2|584567|organism=Nannochloropsis oceanica|type=CDS|length=387bp|location=Sequence derived from alignment at scaffold_7:658699..659331- (Nannochloropsis oceanica)
ATGATGGAAATACTTATGAAAAGAAAGGAGGAGGCGAGCCACGTGATGGT
TTCTGCAGGTGTGCTAACTTTTTTGAAAGGCTGTTCCTTTCCAGTTTTAC
ATACGCTTTCACTTCCTGTATTTTTTTATTTCCTGGCGGGATCGGTCTTG
CGTGCTTCTGCTGGTATTGCCGCTGCAATTGCACATTACCTGCTGCTTGA
CCGACGCTTTATTTCTATGCACAACTTTCTTTTCGTCTTCTTCACCCCTC
CCCTCTTCTTCATTTTCATTCATTTTTTGCTTGCCGGTACTTCTGCTTGG
CCTGATACTGATGCGGCTGCTGCTATGCATGCGTGCGCCTGCTTGTTCGA
TTCCCTTTCCTTGTCACTCGTGCCAATGGCAGGCTAA
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Synonyms
Publications