jgi.p|Nanoce1779_2|576894, mRNA_310 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576894
Unique NamemRNA_310
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1055
Alignment locationscaffold_3:768480..769623 -

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Properties
Property NameValue
TranscriptId576980
TrackFilteredModels2
ProteinId576894
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:768480..769623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576894gene_310Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576894mRNA_310-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_310CDS_310Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_310 ID=mRNA_310|Name=jgi.p|Nanoce1779_2|576894|organism=Nannochloropsis oceanica|type=mRNA|length=1055bp
CAACAGGGCTTAGCGATGCCAAACACCCCGTCCACGACTACGACCACAAG
CCGGGTACTGGTGGCGACCCGTATCCATGGCCAGGAAACGACGACGGCCA
CCCCGTTCGACGGCGCTAAGTTGCGGGCCTTCCTGCGCAGTGCCGTGGGG
TACGCTGATGCAGTGGCAGTGGCAGTAGAGGTGGCGGACGTCTTTCACCC
CAGTTTGCTCGTGGCTGTGCAAGATGTGGCGAAGGAGTTCGGAGGTTGTT
CCATCGACGTGCTCCCCGTCACACCTTGGGGCCGATTTGTGCCTGCTTTG
AACGCTGCCCTGGCTTTCGCCTCGCAGCGGGACTTTTCACACATTCTCTT
CCTCTCCCTCGAAATGGACCTGACTCCGGCAGCTTTTCGAGCACTTTTGG
TCAATTTCGACCCCGCAGAGGACTTGGTAGTGGGTGCAGCCTTGGAAGGC
CACCATTTTCAACCGGGCCGGCGGCCTTTAACCGGCGTTACTACACCATG
GAATACATGTGCGCTCTGGTCCGTCTCCAAACTGAGCCTTTCGGGCTTCC
TGGCGGTCTCGGAAGGGCTTATGCACGACAAGACTGTGGGAGGTGTGGAG
GAGGTTGCTGTCATTGCCTTAGCCCAGCAATGTTTGCGACCGCGGCCTTG
GACATCATCGAAGCTGGGTTCACTTTTTCGATGGAGTACGAAAGTTACTA
GTGCAGGCGCTGCGGATGCGGGAGATAAGGGCGGAGGGCGGGGCATGCGG
GCGAAGCTACTTCATTTGGAGGGTCACTTGGCATGGAAGGTGGATTGGAC
CGATCCCGTGCGGCAAGAGTGGCACCGGAAGAAGATGCAAAGTAAAGTAG
CTCGTGCTGCATTGCAGCTACAGGCATTGGGCTTGGCGAATTCTACGCGG
GAGGTTTCGGCTGCCACGGCAGTGGTGTGGCATATCCAGGTGCCTCCGCC
TGAGCTCAATGCCAGTCCAACGACTTGACCAGCCGGGGGAAATGAGCGGT
AATGGAAGAAATATGCAAATATGAAAGTGAAATCAAGATAAATGAATTTT
AAAAA
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protein sequence of jgi.p|Nanoce1779_2|576894

>mRNA_310-protein ID=mRNA_310-protein|Name=jgi.p|Nanoce1779_2|576894|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp
MPNTPSTTTTTSRVLVATRIHGQETTTATPFDGAKLRAFLRSAVGYADAV
AVAVEVADVFHPSLLVAVQDVAKEFGGCSIDVLPVTPWGRFVPALNAALA
FASQRDFSHILFLSLEMDLTPAAFRALLVNFDPAEDLVVGAALEGHHFQP
GRRPLTGVTTPWNTCALWSVSKLSLSGFLAVSEGLMHDKTVGGVEEVAVI
ALAQQCLRPRPWTSSKLGSLFRWSTKVTSAGAADAGDKGGGRGMRAKLLH
LEGHLAWKVDWTDPVRQEWHRKKMQSKVARAALQLQALGLANSTREVSAA
TAVVWHIQVPPPELNASPTT*
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mRNA from alignment at scaffold_3:768480..769623-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_310 ID=mRNA_310|Name=jgi.p|Nanoce1779_2|576894|organism=Nannochloropsis oceanica|type=mRNA|length=1144bp|location=Sequence derived from alignment at scaffold_3:768480..769623- (Nannochloropsis oceanica)
CAACAGGGCTTAGCGATGCCAAACACCCCGTCCACGACTACGACCACAAG
CCGGGTACTGGTGGCGACCCGTATCCATGGCCAGGAAACGACGACGGCCA
CCCCGTTCGACGGCGCTAAGTTGCGGGCCTTCCTGCGCAGTGCCGTGGGG
TACGCTGATGCAGTGGCAGTGGCAGTAGAGGTGGCGGACGTCTTTCACCC
CAGTTTGCTCGTGGCTGTGCAAGATGTGGCGAAGGAGTTCGGAGGTTGTT
CCATCGACGTGCTCCCCGTCACACCTTGGGGCCGATTTGTGCCTGCTTTG
AACGCTGCCCTGGCTTTCGCCTCGCAGCGGGACTTTTCACACATTCTCTT
CCTCTCCCTCGAAATGGACCTGACTCCGGCAGCTTTTCGAGCACTTTTGG
TCAATTTCGACCCCGCAGAGGACTTGGTAGTGGGTGCAGGTATGTGGTTG
GGAAGGACAGCACGCAAAAGCCTGTCTGGTTTCATATCAATTCATCTCCT
TCCCCATCCCCTCCATTCTTAACAACAGCCTTGGAAGGCCACCATTTTCA
ACCGGGCCGGCGGCCTTTAACCGGCGTTACTACACCATGGAATACATGTG
CGCTCTGGTCCGTCTCCAAACTGAGCCTTTCGGGCTTCCTGGCGGTCTCG
GAAGGGCTTATGCACGACAAGACTGTGGGAGGTGTGGAGGAGGTTGCTGT
CATTGCCTTAGCCCAGCAATGTTTGCGACCGCGGCCTTGGACATCATCGA
AGCTGGGTTCACTTTTTCGATGGAGTACGAAAGTTACTAGTGCAGGCGCT
GCGGATGCGGGAGATAAGGGCGGAGGGCGGGGCATGCGGGCGAAGCTACT
TCATTTGGAGGGTCACTTGGCATGGAAGGTGGATTGGACCGATCCCGTGC
GGCAAGAGTGGCACCGGAAGAAGATGCAAAGTAAAGTAGCTCGTGCTGCA
TTGCAGCTACAGGCATTGGGCTTGGCGAATTCTACGCGGGAGGTTTCGGC
TGCCACGGCAGTGGTGTGGCATATCCAGGTGCCTCCGCCTGAGCTCAATG
CCAGTCCAACGACTTGACCAGCCGGGGGAAATGAGCGGTAATGGAAGAAA
TATGCAAATATGAAAGTGAAATCAAGATAAATGAATTTTAAAAA
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Coding sequence (CDS) from alignment at scaffold_3:768480..769623-

>mRNA_310 ID=mRNA_310|Name=jgi.p|Nanoce1779_2|576894|organism=Nannochloropsis oceanica|type=CDS|length=1926bp|location=Sequence derived from alignment at scaffold_3:768480..769623- (Nannochloropsis oceanica)
CCTTGGAAGGCCACCATTTTCAACCGGGCCGGCGGCCTTTAACCGGCGTT
ACTACACCATGGAATACATGTGCGCTCTGGTCCGTCTCCAAACTGAGCCT
TTCGGGCTTCCTGGCGGTCTCGGAAGGGCTTATGCACGACAAGACTGTGG
GAGGTGTGGAGGAGGTTGCTGTCATTGCCTTAGCCCAGCAATGTTTGCGA
CCGCGGCCTTGGACATCATCGAAGCTGGGTTCACTTTTTCGATGGAGTAC
GAAAGTTACTAGTGCAGGCGCTGCGGATGCGGGAGATAAGGGCGGAGGGC
GGGGCATGCGGGCGAAGCTACTTCATTTGGAGGGTCACTTGGCATGGAAG
GTGGATTGGACCGATCCCGTGCGGCAAGAGTGGCACCGGAAGAAGATGCA
AAGTAAAGTAGCTCGTGCTGCATTGCAGCTACAGGCATTGGGCTTGGCGA
ATTCTACGCGGGAGGTTTCGGCTGCCACGGCAGTGGTGTGGCATATCCAG
GTGCCTCCGCCTGAGCTCAATGCCAGTCCAACGACTTGAATGCCAAACAC
CCCGTCCACGACTACGACCACAAGCCGGGTACTGGTGGCGACCCGTATCC
ATGGCCAGGAAACGACGACGGCCACCCCGTTCGACGGCGCTAAGTTGCGG
GCCTTCCTGCGCAGTGCCGTGGGGTACGCTGATGCAGTGGCAGTGGCAGT
AGAGGTGGCGGACGTCTTTCACCCCAGTTTGCTCGTGGCTGTGCAAGATG
TGGCGAAGGAGTTCGGAGGTTGTTCCATCGACGTGCTCCCCGTCACACCT
TGGGGCCGATTTGTGCCTGCTTTGAACGCTGCCCTGGCTTTCGCCTCGCA
GCGGGACTTTTCACACATTCTCTTCCTCTCCCTCGAAATGGACCTGACTC
CGGCAGCTTTTCGAGCACTTTTGGTCAATTTCGACCCCGCAGAGGACTTG
GTAGTGGGTGCAGCCTTGGAAGGCCACCATTTTCAACCGGGCCGGCGGCC
TTTAACCGGCGTTACTACACCATGGAATACATGTGCGCTCTGGTCCGTCT
CCAAACTGAGCCTTTCGGGCTTCCTGGCGGTCTCGGAAGGGCTTATGCAC
GACAAGACTGTGGGAGGTGTGGAGGAGGTTGCTGTCATTGCCTTAGCCCA
GCAATGTTTGCGACCGCGGCCTTGGACATCATCGAAGCTGGGTTCACTTT
TTCGATGGAGTACGAAAGTTACTAGTGCAGGCGCTGCGGATGCGGGAGAT
AAGGGCGGAGGGCGGGGCATGCGGGCGAAGCTACTTCATTTGGAGGGTCA
CTTGGCATGGAAGGTGGATTGGACCGATCCCGTGCGGCAAGAGTGGCACC
GGAAGAAGATGCAAAGTAAAGTAGCTCGTGCTGCATTGCAGCTACAGGCA
TTGGGCTTGGCGAATTCTACGCGGGAGGTTTCGGCTGCCACGGCAGTGGT
GTGGCATATCCAGGTGCCTCCGCCTGAGCTCAATGCCAGTCCAACGACTT
GAATGCCAAACACCCCGTCCACGACTACGACCACAAGCCGGGTACTGGTG
GCGACCCGTATCCATGGCCAGGAAACGACGACGGCCACCCCGTTCGACGG
CGCTAAGTTGCGGGCCTTCCTGCGCAGTGCCGTGGGGTACGCTGATGCAG
TGGCAGTGGCAGTAGAGGTGGCGGACGTCTTTCACCCCAGTTTGCTCGTG
GCTGTGCAAGATGTGGCGAAGGAGTTCGGAGGTTGTTCCATCGACGTGCT
CCCCGTCACACCTTGGGGCCGATTTGTGCCTGCTTTGAACGCTGCCCTGG
CTTTCGCCTCGCAGCGGGACTTTTCACACATTCTCTTCCTCTCCCTCGAA
ATGGACCTGACTCCGGCAGCTTTTCGAGCACTTTTGGTCAATTTCGACCC
CGCAGAGGACTTGGTAGTGGGTGCAG
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Synonyms
Publications