jgi.p|Nanoce1779_2|584556, mRNA_3098 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584556
Unique NamemRNA_3098
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1308
Alignment locationscaffold_7:653477..655278 -

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Properties
Property NameValue
TranscriptId584642
TrackFilteredModels2
ProteinId584556
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:653477..655278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584556gene_3098Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584556mRNA_3098-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3098CDS_3098Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3098 ID=mRNA_3098|Name=jgi.p|Nanoce1779_2|584556|organism=Nannochloropsis oceanica|type=mRNA|length=1308bp
CAGACACATACCAACAGTGCGCCGAGAGGCATAGAAGCCAGAAATAGAAA
GCGTCATCGTCTCAAGACCGTAGCTACGCCCGGTCCGTCCATCGTCCCGT
AGAGAACAATAACATCGCAAACCATGTCTCTCCCCTCCAACGCCGGCACC
CTCGAGCCCGCCAACATCCTTATAGGAATCCCCAAGAAGGGCCGACTCAA
CGAAAAGGTCACCAAGCTTTTGGATGGAGCCGGATTGGAATACCGTCGTC
CTGACCGGGTGGATGTCGCAGTCTGCACGGGGTTGCCCGTGACTTTAGTC
TTCTTGCCTGCCGCTGATATCGCTGCATATGTAGGCGAAGGCAATGTAGA
CATGGGCATTACGGGTCAGGATATTTTGATGGAAACGCGGTTGGATAGCC
CGGATTGTCATATTGTCGAGCTGCTAGAGTTAGGGTTTGGGAAGTGCTCC
CTCTCCCTGCAGGCGCCGGTGAAAAATAATCACACGGGAGCGAGGGAGCT
GAGTGGTGGGCGCATTGTGACGAGTTTCCCGGCGTTGACCCGGGCATTTT
TTGATAAATTTGATGAAGAAACGGGGAACCATACAAAGGTGCGCACTGTG
TCGGGGTCCGTAGAAGCGGCCTGTGGTCTTGGACTGGCGGATGCTGTGGT
GGATCTGGTCGAAACAGGCACCACAATGAAAGCTGCTGGTTTAGACGTCG
TTGCCGAAGTGATGGTCTCCCAGGCCGTCCTTATCGCCAATCCCAACTCG
ACTCACCAAGACTTGATCTCGCTAATTCTGAAGCGGATCGAGGGTTATAT
TACTGCTACTCAGTACATGATGATTTCTTACAACGTTCGCCGGGAGAGTT
TAACACAAGCCTTGGCCATCACTCCAGGTAAGAGATCCCCCACCGTCAGC
ACGTTGGAAGAAGACAGCTGGGTGGCGGTGCAGTCGTTGGTGAAACGGAA
AGAGAGCAGCGCCAAGATGGACCAATTGCATGATGCGGGGGCGACGGATA
TCCTCTTGTTTCCCATTTCGAATTCTCGGATGTAAGGGGACGGGGAAGGA
CGAGAGTGAGGGAGGGAGTGAGGAGGGTGTTCAGAGTAGAAAGGGGGAAA
GAAGAAACACAAAGTATCCGCATGATTTTGGGTGTGCGGGTGTGTGGATG
TGCGTGTGGGTGTGGTTGTGTGTGAGTGCTCATGTTCTGGTGTGATTGTG
ATTGTGGCTCATCTGTGCGTGTTCGTACTGTGCGCAAGTCATACCCCTTT
GCAAACCGAATCACCAAAAGAGAAAGGGAACTCAAACCATGAACAACAAC
TGCCGAAC
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protein sequence of jgi.p|Nanoce1779_2|584556

>mRNA_3098-protein ID=mRNA_3098-protein|Name=jgi.p|Nanoce1779_2|584556|organism=Nannochloropsis oceanica|type=polypeptide|length=304bp
MSLPSNAGTLEPANILIGIPKKGRLNEKVTKLLDGAGLEYRRPDRVDVAV
CTGLPVTLVFLPAADIAAYVGEGNVDMGITGQDILMETRLDSPDCHIVEL
LELGFGKCSLSLQAPVKNNHTGARELSGGRIVTSFPALTRAFFDKFDEET
GNHTKVRTVSGSVEAACGLGLADAVVDLVETGTTMKAAGLDVVAEVMVSQ
AVLIANPNSTHQDLISLILKRIEGYITATQYMMISYNVRRESLTQALAIT
PGKRSPTVSTLEEDSWVAVQSLVKRKESSAKMDQLHDAGATDILLFPISN
SRM*
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mRNA from alignment at scaffold_7:653477..655278-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3098 ID=mRNA_3098|Name=jgi.p|Nanoce1779_2|584556|organism=Nannochloropsis oceanica|type=mRNA|length=1802bp|location=Sequence derived from alignment at scaffold_7:653477..655278- (Nannochloropsis oceanica)
CAGACACATACCAACAGTGCGCCGAGAGGCATAGAAGCCAGAAATAGAAA
GCGTCATCGTCTCAAGACCGTAGCTACGCCCGGTCCGTCCATCGTCCCGT
AGAGAACAATAACATCGCAAACCATGGTAAGCACGGAGGGCGTGTGGTGG
AAAGAGGGTAGAGCGTGGGAGAGGGTGACAAGTTCTGCAGCTTCGTGGGA
TCAAACGCAGCCCAACCTTCATGCTTGAGAAGGCAAATTAGAAAGTGCCT
TCACCGGCATGACCCTATACCTTTCCATCCCAGCCTCCCTACAATGGCAA
TCCTCTCCCCCCCCCACGCACATGGGGAGGTCGGGCGGAGCCGCCACTGC
GACGCGACGTAGCCACCAACTCAAATGTCAATAGGCCCGTACGCTACCGT
CATCCGTCTTGCTTTCTGTGCTCTGCTCTCAATCGCACTACCTATCCTGC
ACGCATCAATTTCGTCCTCGCTCACTTCTCCTCTTACTCCACCCCCTGGA
CAGTCTCTCCCCTCCAACGCCGGCACCCTCGAGCCCGCCAACATCCTTAT
AGGAATCCCCAAGAAGGGCCGACTCAACGAAAAGGTCACCAAGCTTTTGG
ATGGAGCCGGATTGGAATACCGTCGTCCTGACCGGGTGGATGTCGCAGTC
TGCACGGGGTTGCCCGTGACTTTAGTCTTCTTGCCTGCCGCTGATATCGC
TGCATATGTAGGCGAAGGCAATGTAGACATGGGCATTACGGGTCAGGATA
TTTTGATGGAAACGCGGTTGGATAGCCCGGATTGTCATATTGTCGAGCTG
CTAGAGTTAGGGTTTGGGAAGTGCTCCCTCTCCCTGCAGGCGCCGGTGAA
AAATAATCACACGGGAGCGAGGGAGCTGAGTGGTGGGCGCATTGTGACGA
GTTTCCCGGCGTTGACCCGGGCATTTTTTGATAAATTTGATGAAGAAACG
GGGAACCATACAAGTACGTGAATAAGGGCGGGATGCAGGGGGTGGAGAGA
AGAGAGGGAATGAGAGTGTTTCTGTCATCGTGATTGAGCAGAAAACTCAC
CATCTTTTTCCCTCCGCCTACACAAAATAGAGGTGCGCACTGTGTCGGGG
TCCGTAGAAGCGGCCTGTGGTCTTGGACTGGCGGATGCTGTGGTGGATCT
GGTCGAAACAGGCACCACAATGAAAGCTGCTGGTTTAGACGTCGTTGCCG
AAGTGATGGTCTCCCAGGCCGTCCTTATCGCCAATCCCAACTCGACTCAC
CAAGACTTGATCTCGCTAATTCTGAAGCGGATCGAGGGTTATATTACTGC
TACTCAGTACATGATGATTTCTTACAACGTTCGCCGGGAGAGTTTAACAC
AAGCCTTGGCCATCACTCCAGGTAAGAGATCCCCCACCGTCAGCACGTTG
GAAGAAGACAGCTGGGTGGCGGTGCAGTCGTTGGTGAAACGGAAAGAGAG
CAGCGCCAAGATGGACCAATTGCATGATGCGGGGGCGACGGATATCCTCT
TGTTTCCCATTTCGAATTCTCGGATGTAAGGGGACGGGGAAGGACGAGAG
TGAGGGAGGGAGTGAGGAGGGTGTTCAGAGTAGAAAGGGGGAAAGAAGAA
ACACAAAGTATCCGCATGATTTTGGGTGTGCGGGTGTGTGGATGTGCGTG
TGGGTGTGGTTGTGTGTGAGTGCTCATGTTCTGGTGTGATTGTGATTGTG
GCTCATCTGTGCGTGTTCGTACTGTGCGCAAGTCATACCCCTTTGCAAAC
CGAATCACCAAAAGAGAAAGGGAACTCAAACCATGAACAACAACTGCCGA
AC
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Coding sequence (CDS) from alignment at scaffold_7:653477..655278-

>mRNA_3098 ID=mRNA_3098|Name=jgi.p|Nanoce1779_2|584556|organism=Nannochloropsis oceanica|type=CDS|length=2736bp|location=Sequence derived from alignment at scaffold_7:653477..655278- (Nannochloropsis oceanica)
AGGTGCGCACTGTGTCGGGGTCCGTAGAAGCGGCCTGTGGTCTTGGACTG
GCGGATGCTGTGGTGGATCTGGTCGAAACAGGCACCACAATGAAAGCTGC
TGGTTTAGACGTCGTTGCCGAAGTGATGGTCTCCCAGGCCGTCCTTATCG
CCAATCCCAACTCGACTCACCAAGACTTGATCTCGCTAATTCTGAAGCGG
ATCGAGGGTTATATTACTGCTACTCAGTACATGATGATTTCTTACAACGT
TCGCCGGGAGAGTTTAACACAAGCCTTGGCCATCACTCCAGGTAAGAGAT
CCCCCACCGTCAGCACGTTGGAAGAAGACAGCTGGGTGGCGGTGCAGTCG
TTGGTGAAACGGAAAGAGAGCAGCGCCAAGATGGACCAATTGCATGATGC
GGGGGCGACGGATATCCTCTTGTTTCCCATTTCGAATTCTCGGATGTAAT
CTCTCCCCTCCAACGCCGGCACCCTCGAGCCCGCCAACATCCTTATAGGA
ATCCCCAAGAAGGGCCGACTCAACGAAAAGGTCACCAAGCTTTTGGATGG
AGCCGGATTGGAATACCGTCGTCCTGACCGGGTGGATGTCGCAGTCTGCA
CGGGGTTGCCCGTGACTTTAGTCTTCTTGCCTGCCGCTGATATCGCTGCA
TATGTAGGCGAAGGCAATGTAGACATGGGCATTACGGGTCAGGATATTTT
GATGGAAACGCGGTTGGATAGCCCGGATTGTCATATTGTCGAGCTGCTAG
AGTTAGGGTTTGGGAAGTGCTCCCTCTCCCTGCAGGCGCCGGTGAAAAAT
AATCACACGGGAGCGAGGGAGCTGAGTGGTGGGCGCATTGTGACGAGTTT
CCCGGCGTTGACCCGGGCATTTTTTGATAAATTTGATGAAGAAACGGGGA
ACCATACAAATGAGGTGCGCACTGTGTCGGGGTCCGTAGAAGCGGCCTGT
GGTCTTGGACTGGCGGATGCTGTGGTGGATCTGGTCGAAACAGGCACCAC
AATGAAAGCTGCTGGTTTAGACGTCGTTGCCGAAGTGATGGTCTCCCAGG
CCGTCCTTATCGCCAATCCCAACTCGACTCACCAAGACTTGATCTCGCTA
ATTCTGAAGCGGATCGAGGGTTATATTACTGCTACTCAGTACATGATGAT
TTCTTACAACGTTCGCCGGGAGAGTTTAACACAAGCCTTGGCCATCACTC
CAGGTAAGAGATCCCCCACCGTCAGCACGTTGGAAGAAGACAGCTGGGTG
GCGGTGCAGTCGTTGGTGAAACGGAAAGAGAGCAGCGCCAAGATGGACCA
ATTGCATGATGCGGGGGCGACGGATATCCTCTTGTTTCCCATTTCGAATT
CTCGGATGTAATCTCTCCCCTCCAACGCCGGCACCCTCGAGCCCGCCAAC
ATCCTTATAGGAATCCCCAAGAAGGGCCGACTCAACGAAAAGGTCACCAA
GCTTTTGGATGGAGCCGGATTGGAATACCGTCGTCCTGACCGGGTGGATG
TCGCAGTCTGCACGGGGTTGCCCGTGACTTTAGTCTTCTTGCCTGCCGCT
GATATCGCTGCATATGTAGGCGAAGGCAATGTAGACATGGGCATTACGGG
TCAGGATATTTTGATGGAAACGCGGTTGGATAGCCCGGATTGTCATATTG
TCGAGCTGCTAGAGTTAGGGTTTGGGAAGTGCTCCCTCTCCCTGCAGGCG
CCGGTGAAAAATAATCACACGGGAGCGAGGGAGCTGAGTGGTGGGCGCAT
TGTGACGAGTTTCCCGGCGTTGACCCGGGCATTTTTTGATAAATTTGATG
AAGAAACGGGGAACCATACAAATGAGGTGCGCACTGTGTCGGGGTCCGTA
GAAGCGGCCTGTGGTCTTGGACTGGCGGATGCTGTGGTGGATCTGGTCGA
AACAGGCACCACAATGAAAGCTGCTGGTTTAGACGTCGTTGCCGAAGTGA
TGGTCTCCCAGGCCGTCCTTATCGCCAATCCCAACTCGACTCACCAAGAC
TTGATCTCGCTAATTCTGAAGCGGATCGAGGGTTATATTACTGCTACTCA
GTACATGATGATTTCTTACAACGTTCGCCGGGAGAGTTTAACACAAGCCT
TGGCCATCACTCCAGGTAAGAGATCCCCCACCGTCAGCACGTTGGAAGAA
GACAGCTGGGTGGCGGTGCAGTCGTTGGTGAAACGGAAAGAGAGCAGCGC
CAAGATGGACCAATTGCATGATGCGGGGGCGACGGATATCCTCTTGTTTC
CCATTTCGAATTCTCGGATGTAATCTCTCCCCTCCAACGCCGGCACCCTC
GAGCCCGCCAACATCCTTATAGGAATCCCCAAGAAGGGCCGACTCAACGA
AAAGGTCACCAAGCTTTTGGATGGAGCCGGATTGGAATACCGTCGTCCTG
ACCGGGTGGATGTCGCAGTCTGCACGGGGTTGCCCGTGACTTTAGTCTTC
TTGCCTGCCGCTGATATCGCTGCATATGTAGGCGAAGGCAATGTAGACAT
GGGCATTACGGGTCAGGATATTTTGATGGAAACGCGGTTGGATAGCCCGG
ATTGTCATATTGTCGAGCTGCTAGAGTTAGGGTTTGGGAAGTGCTCCCTC
TCCCTGCAGGCGCCGGTGAAAAATAATCACACGGGAGCGAGGGAGCTGAG
TGGTGGGCGCATTGTGACGAGTTTCCCGGCGTTGACCCGGGCATTTTTTG
ATAAATTTGATGAAGAAACGGGGAACCATACAAATG
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Synonyms
Publications