jgi.p|Nanoce1779_2|584555, mRNA_3097 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584555
Unique NamemRNA_3097
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1044
Alignment locationscaffold_7:652377..653420 +

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Properties
Property NameValue
TranscriptId584641
TrackFilteredModels2
ProteinId584555
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:652377..653420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584555gene_3097Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584555mRNA_3097-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3097CDS_3097Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3097 ID=mRNA_3097|Name=jgi.p|Nanoce1779_2|584555|organism=Nannochloropsis oceanica|type=mRNA|length=1044bp
CAGAGCCACCACCAACATCAGCACCACCAATTGCAGCAGCAGCCACAGCA
GCCGCAGCAGCCACAGCAGCCACAGCAGCCATGTCTGACACTCAACACAA
TGGAGGAGACGCCGGGGCCAGTAGCAGCAATGATAGCGGCGGGAATAAGA
AAAGGCCTTGGGTGCCACCCAAGTTTGTGCAGGAGGCGCTGGGTCACTTG
CCAATTGTTGAGGACGGACAACATCCCCAGAAGCGTTTTTATCGTTCCCG
CGCGCATTGTAACCCCTTATCCCACAACGATGCCTTCGAGTATCCTCCCA
ACCCTGGTGCAATGGATTGGTGCCCGCTCTACCCCGCCCTTGCCAACCCC
ACTGTGCGCTTCTTGGATGTTGGCTGCGGGTTCGGCGGCCTGACAGTGGC
GCTCTCAACTCTCTTCCCCGAAAAAGTGGTTTTGGCCTTAGAAATCCGAG
CCAAGGTGTGCGAATTTGTGCGTCTCCGCATTCAGGAAATGCGGAAGGAG
TCCCCCCCCCGGGCTGAGAACGCCAACGTCCTCAAAACCAACGCCATGAA
ATACCTTCCCCACTTCTTTCACAAAGGCCAACTCGAGAAGATTTTCTTCT
GCTTCCCCGATCCACATTTCAAAGCCAAGAACCACCGGCGCCGGATTATC
AGTGAGCGATTGCTGACTGAGTATGCCTATTTGCTCGCGGAAGGCGGACT
TCTTTACGCCATCACCGACGTGGAAGAGCTCCACCATTGGCATGTGGCCA
AGCTTACGGAACACGCTAGCTTCGAGCGGATTCCTGACGAGCGATTGGTA
GGGGACGTCACGGTTGCAGCAATTACCAACGAGACGGAGGAAGGCAAGAA
GGTAGAGCGCGCGAAGGGCAAGAAATTTTTGTGCGTCTTTCGAAGACGCC
CTGACGCGGTGGTGATCCAGGAAATGAAGCAGAGCTGGCCGGAGTGGACA
GGAGAGAACGAAGAGAAGGAAGAGGAAGAATAGAGACACATCAAGTGCAC
CTTTGCAAGGAGGAAGTCAAGCAAACAAAAAGGAAACAAGACTG
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protein sequence of jgi.p|Nanoce1779_2|584555

>mRNA_3097-protein ID=mRNA_3097-protein|Name=jgi.p|Nanoce1779_2|584555|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MSDTQHNGGDAGASSSNDSGGNKKRPWVPPKFVQEALGHLPIVEDGQHPQ
KRFYRSRAHCNPLSHNDAFEYPPNPGAMDWCPLYPALANPTVRFLDVGCG
FGGLTVALSTLFPEKVVLALEIRAKVCEFVRLRIQEMRKESPPRAENANV
LKTNAMKYLPHFFHKGQLEKIFFCFPDPHFKAKNHRRRIISERLLTEYAY
LLAEGGLLYAITDVEELHHWHVAKLTEHASFERIPDERLVGDVTVAAITN
ETEEGKKVERAKGKKFLCVFRRRPDAVVIQEMKQSWPEWTGENEEKEEEE
*
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mRNA from alignment at scaffold_7:652377..653420+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3097 ID=mRNA_3097|Name=jgi.p|Nanoce1779_2|584555|organism=Nannochloropsis oceanica|type=mRNA|length=1044bp|location=Sequence derived from alignment at scaffold_7:652377..653420+ (Nannochloropsis oceanica)
CAGAGCCACCACCAACATCAGCACCACCAATTGCAGCAGCAGCCACAGCA
GCCGCAGCAGCCACAGCAGCCACAGCAGCCATGTCTGACACTCAACACAA
TGGAGGAGACGCCGGGGCCAGTAGCAGCAATGATAGCGGCGGGAATAAGA
AAAGGCCTTGGGTGCCACCCAAGTTTGTGCAGGAGGCGCTGGGTCACTTG
CCAATTGTTGAGGACGGACAACATCCCCAGAAGCGTTTTTATCGTTCCCG
CGCGCATTGTAACCCCTTATCCCACAACGATGCCTTCGAGTATCCTCCCA
ACCCTGGTGCAATGGATTGGTGCCCGCTCTACCCCGCCCTTGCCAACCCC
ACTGTGCGCTTCTTGGATGTTGGCTGCGGGTTCGGCGGCCTGACAGTGGC
GCTCTCAACTCTCTTCCCCGAAAAAGTGGTTTTGGCCTTAGAAATCCGAG
CCAAGGTGTGCGAATTTGTGCGTCTCCGCATTCAGGAAATGCGGAAGGAG
TCCCCCCCCCGGGCTGAGAACGCCAACGTCCTCAAAACCAACGCCATGAA
ATACCTTCCCCACTTCTTTCACAAAGGCCAACTCGAGAAGATTTTCTTCT
GCTTCCCCGATCCACATTTCAAAGCCAAGAACCACCGGCGCCGGATTATC
AGTGAGCGATTGCTGACTGAGTATGCCTATTTGCTCGCGGAAGGCGGACT
TCTTTACGCCATCACCGACGTGGAAGAGCTCCACCATTGGCATGTGGCCA
AGCTTACGGAACACGCTAGCTTCGAGCGGATTCCTGACGAGCGATTGGTA
GGGGACGTCACGGTTGCAGCAATTACCAACGAGACGGAGGAAGGCAAGAA
GGTAGAGCGCGCGAAGGGCAAGAAATTTTTGTGCGTCTTTCGAAGACGCC
CTGACGCGGTGGTGATCCAGGAAATGAAGCAGAGCTGGCCGGAGTGGACA
GGAGAGAACGAAGAGAAGGAAGAGGAAGAATAGAGACACATCAAGTGCAC
CTTTGCAAGGAGGAAGTCAAGCAAACAAAAAGGAAACAAGACTG
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Coding sequence (CDS) from alignment at scaffold_7:652377..653420+

>mRNA_3097 ID=mRNA_3097|Name=jgi.p|Nanoce1779_2|584555|organism=Nannochloropsis oceanica|type=CDS|length=903bp|location=Sequence derived from alignment at scaffold_7:652377..653420+ (Nannochloropsis oceanica)
ATGTCTGACACTCAACACAATGGAGGAGACGCCGGGGCCAGTAGCAGCAA
TGATAGCGGCGGGAATAAGAAAAGGCCTTGGGTGCCACCCAAGTTTGTGC
AGGAGGCGCTGGGTCACTTGCCAATTGTTGAGGACGGACAACATCCCCAG
AAGCGTTTTTATCGTTCCCGCGCGCATTGTAACCCCTTATCCCACAACGA
TGCCTTCGAGTATCCTCCCAACCCTGGTGCAATGGATTGGTGCCCGCTCT
ACCCCGCCCTTGCCAACCCCACTGTGCGCTTCTTGGATGTTGGCTGCGGG
TTCGGCGGCCTGACAGTGGCGCTCTCAACTCTCTTCCCCGAAAAAGTGGT
TTTGGCCTTAGAAATCCGAGCCAAGGTGTGCGAATTTGTGCGTCTCCGCA
TTCAGGAAATGCGGAAGGAGTCCCCCCCCCGGGCTGAGAACGCCAACGTC
CTCAAAACCAACGCCATGAAATACCTTCCCCACTTCTTTCACAAAGGCCA
ACTCGAGAAGATTTTCTTCTGCTTCCCCGATCCACATTTCAAAGCCAAGA
ACCACCGGCGCCGGATTATCAGTGAGCGATTGCTGACTGAGTATGCCTAT
TTGCTCGCGGAAGGCGGACTTCTTTACGCCATCACCGACGTGGAAGAGCT
CCACCATTGGCATGTGGCCAAGCTTACGGAACACGCTAGCTTCGAGCGGA
TTCCTGACGAGCGATTGGTAGGGGACGTCACGGTTGCAGCAATTACCAAC
GAGACGGAGGAAGGCAAGAAGGTAGAGCGCGCGAAGGGCAAGAAATTTTT
GTGCGTCTTTCGAAGACGCCCTGACGCGGTGGTGATCCAGGAAATGAAGC
AGAGCTGGCCGGAGTGGACAGGAGAGAACGAAGAGAAGGAAGAGGAAGAA
TAG
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Synonyms
Publications