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Properties
| Property Name | Value |
|---|
| TranscriptId | 584636 |
| Track | FilteredModels2 |
| ProteinId | 584550 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_7 | supercontig | scaffold_7:646271..648677 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3095 ID=mRNA_3095|Name=jgi.p|Nanoce1779_2|584550|organism=Nannochloropsis oceanica|type=mRNA|length=1902bp
ACAGGGCCAGCAAGCTCGGCTTCGGCCACAATCATGCGCGTGCCACCGCA
GACATGCTTACTCGTCCTGCTGGCGATGGCCGCACACCAATGCGCGCATG
CTTTCGTGCCGCACTTCGCCTCCACCAAGGGGGCAGCGCCATCCGTGCAT
ACTTTCATTGGTCCAAGCAGCCGCGAAGGGCTTTTGGATGCGACAGCAGC
CGAAAGTAAAGACCAGAGACGGAAAGGCTGGACCCTCATGGTGGCGCTCC
CCACGGCCAGTGTCAAAACCGAATCAGCGGCCGTAGCGCCTGCAGCAGGC
AATGAGCCCCCCAAGCAAAAGACAACACGCGTCATCATGAAGTTCGGCGG
CAGTTCCCTGGCCAATTCAGAGCGCGTGGACTACGTGGCAAAATTAATCA
AATCCCAGATCGAAAAGGGCTTCCGACCCACGGTCGTCTGCTCGGCCATG
GGCAAAACCACCAACAACCTGCTCAACGCCGGGCATTTCGCTTTGGAGGG
TAACGTGTACGTGGATTCCCTCCGGACTTTGCATTTGACGACGGCTCAAG
AGTTGGGCATGGGCAATGATACGATTGCTTCGATTGAGGAGCTGCTGGAC
GAGTTGAAGAATTTGCTGAACGGGGTGTCGTACTTGCGGGAGCTGACACC
GCGCACACTCGACTATTTGGTATCCTTCGGCGAGCGTCTGTCCGTGCGCA
TCATGGCCGCCCGCCTGAACCAACTCGGCGTACCCGCGCAGCACTTCGAG
TCCTGGAATCTTGGGCTGCGGACCACGAGCGACTTCGGCAAGGCTGAAAT
CTTGCCCGAGTGCTACGACACAATCAAAACAGCAATGAAAAAGCTCGACG
GCTCAATGGTAGCAGTTGTAACGGGCTTCATCGGCCATGATCCCGAAGGG
CGAATCACCACGCTAGGTCGAGGCGGCTCTGATCTGACGGCATCGACACT
GGGTGCGGCGGTGCCGGTGGATGAAATCCAGGTCTGGAAGGACGTAAATG
GCATTATGACAGCTAACCCCAGGGTGGTATCCAATGCTATCCCTGTTCCC
TTTGTCTCGTTCGAAGAGGCCTCAGAACTGGCATATTTTGGAGCCGAAAT
TCTTCACCCGATTAGTATGGGACCGGCGATGCGGTTCAATATCCCTGTGC
GTGTAAAGAACTCTTACAATCCTGATCATCCGGGTACTGTCATTTGGGAC
GATAATGACAAGACGCAGTTGGTGACGGCGATTACGAGCAAGCGGCATGT
GGATCTGGTGGACATCGTCAGTACGTGGATGTTGGGGCAGTACGGGTTTT
TGAGCCGGGTTTTCAGCATTTTCGAGGAACAGAAGATTTCGGTGGACTGC
GTGGCGACCAGTGAGGTGTCTATTTCTCTTACTCTAGATGCGAAGAAGCA
CGATGACGACGCAGAGGGCCGTTTGGTTAAAGCTTTGAGTGATGTTGCCG
CGGTGACCGTGCACCCGAACCGGGCCATTGTCTCGCTCATTGCTAATGTG
GCTAGGTCATCAGAGGTCCTTTCCATTGTGTTCGATGCCCTCAAAGAGGC
TGGAATTCAAGTGGAGATGCTTTCGCAGGGTGCCAGCAAAGTCAACATCA
GCCTCATCGTCAAAGACGAAGATGCAGAGCGTTGCACCCAGATCCTCCAC
GATCGATTCTTCTACCCCAATGGTGCGCCTCCGGTTGAAGCCCAGTGAGG
AAATTCGGTAGGCAAGAGGTATGAGGGAATGTGGGGGGTGGTGCCATTAG
AGACGTGTGTAGCGGAGGCATGACGTAAAATAAATGAAATATTATGGGTA
AAATTCTTTAAAGAGGGTATGATGACAAGCCTTTTTTTGACACAAGACTA
CAAGAAAGAAAGATTGAACACGTGGTAACGGCGGTCTCTCACAAGTTATT
CA back to topprotein sequence of jgi.p|Nanoce1779_2|584550 >mRNA_3095-protein ID=mRNA_3095-protein|Name=jgi.p|Nanoce1779_2|584550|organism=Nannochloropsis oceanica|type=polypeptide|length=555bp
MRVPPQTCLLVLLAMAAHQCAHAFVPHFASTKGAAPSVHTFIGPSSREGL
LDATAAESKDQRRKGWTLMVALPTASVKTESAAVAPAAGNEPPKQKTTRV
IMKFGGSSLANSERVDYVAKLIKSQIEKGFRPTVVCSAMGKTTNNLLNAG
HFALEGNVYVDSLRTLHLTTAQELGMGNDTIASIEELLDELKNLLNGVSY
LRELTPRTLDYLVSFGERLSVRIMAARLNQLGVPAQHFESWNLGLRTTSD
FGKAEILPECYDTIKTAMKKLDGSMVAVVTGFIGHDPEGRITTLGRGGSD
LTASTLGAAVPVDEIQVWKDVNGIMTANPRVVSNAIPVPFVSFEEASELA
YFGAEILHPISMGPAMRFNIPVRVKNSYNPDHPGTVIWDDNDKTQLVTAI
TSKRHVDLVDIVSTWMLGQYGFLSRVFSIFEEQKISVDCVATSEVSISLT
LDAKKHDDDAEGRLVKALSDVAAVTVHPNRAIVSLIANVARSSEVLSIVF
DALKEAGIQVEMLSQGASKVNISLIVKDEDAERCTQILHDRFFYPNGAPP
VEAQ* back to topmRNA from alignment at scaffold_7:646271..648677+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3095 ID=mRNA_3095|Name=jgi.p|Nanoce1779_2|584550|organism=Nannochloropsis oceanica|type=mRNA|length=2407bp|location=Sequence derived from alignment at scaffold_7:646271..648677+ (Nannochloropsis oceanica)
ACAGGGCCAGCAAGCTCGGCTTCGGCCACAATCATGCGCGTGCCACCGCA
GACATGCTTACTCGTCCTGCTGGCGATGGCCGCACACCAATGCGCGCATG
CTTTCGTGCCGCACTTCGCCTCCACCAAGGGGGCAGCGCCATCCGTGCAT
ACTTTCATTGGTCCAAGCAGCCGCGAAGGGCTTTTGGATGCGACAGCAGC
CGAAAGTAAAGACCAGAGACGGAAAGGCTGGACCCTCATGGTGGCGCTCC
CCACGGCCAGTGTCAAAGTAAGTCTCCGGGAGGGATTGGGGCGGGGAGGC
TACGTTGTGCGGGTAGTAGTATGGCGACACTTGCACAGTAATTGAGCTGC
ATTAGAGGGTGGATTGAAGGTTTTCATGCCAAGCATTAAATGTTCCCTGT
AGCAGCGGCGACAGGCGGCCTTGCTCCCCACAATCCGTCCGCTAGTATCA
CCGTCGTTTCCCCTCAAACGACACACACGAATGTCTTACCCATTTCTACC
CGCGCGGGAGCAATTCTGTCCATTTATCATCCACCACCATCCACCCGTAC
TCCCACCAACTGATTAGTACCTTTGCAACGCATGCACACATACCCCCCAG
ACCGAATCAGCGGCCGTAGCGCCTGCAGCAGGCAATGAGCCCCCCAAGCA
AAAGACAACACGCGTCATCATGAAGTTCGGCGGCAGTTCCCTGGCCAATT
CAGAGCGCGTGGACTACGTGGCAAAATTAATCAAATCCCAGATCGAAAAG
GGCTTCCGACCCACGGTCGTCTGCTCGGCCATGGGCAAAACCACCAACAA
CCTGCTCAACGCCGGGCATTTCGCTTTGGAGGGTAACGTGTACGTGGATT
CCCTCCGGACTTTGCATTTGACGACGGCTCAAGAGTTGGGCATGGGCAAT
GATACGATTGCTTCGATTGAGGAGCTGCTGGACGAGTTGAAGAATTTGCT
GAACGGGGTGTCGTACTTGCGGGAGCTGACACCGCGCACACTCGACTATT
TGGTGAGAAAATTTTGCGTTTTACGCGTGCTAAATGGGTAGTCATTCTTG
GCCTCCGAGCTTATTCTTTCTCATCAAAGATATTACTTTATATACTTCGA
GACCGCCCCAAATTTGATCTATCATAACACATCCATATCCACCTTTACTC
CCCTCCTCCCTGAACCTTCCACAGGTATCCTTCGGCGAGCGTCTGTCCGT
GCGCATCATGGCCGCCCGCCTGAACCAACTCGGCGTACCCGCGCAGCACT
TCGAGTCCTGGAATCTTGGGCTGCGGACCACGAGCGACTTCGGCAAGGCT
GAAATCTTGCCCGAGTGCTACGACACAATCAAAACAGCAATGAAAAAGCT
CGACGGCTCAATGGTAGCAGTTGTAACGGGCTTCATCGGCCATGATCCCG
AAGGGCGAATCACCACGCTAGGTCGAGGCGGCTCTGATCTGACGGCATCG
ACACTGGGTGCGGCGGTGCCGGTGGATGAAATCCAGGTCTGGAAGGACGT
AAATGGCATTATGACAGCTAACCCCAGGGTGGTATCCAATGCTATCCCTG
TTCCCTTTGTCTCGTTCGAAGAGGCCTCAGAACTGGCATATTTTGGAGCC
GAAATTCTTCACCCGATTAGTATGGGACCGGCGATGCGGTTCAATATCCC
TGTGCGTGTAAAGAACTCTTACAATCCTGATCATCCGGGTACTGTCATTT
GGGACGATAATGACAAGACGCAGTTGGTGACGGCGATTACGAGCAAGCGG
CATGTGGATCTGGTGGACATCGTCAGTACGTGGATGTTGGGGCAGTACGG
GTTTTTGAGCCGGGTTTTCAGCATTTTCGAGGAACAGAAGATTTCGGTGG
ACTGCGTGGCGACCAGTGAGGTGTCTATTTCTCTTACTCTAGATGCGAAG
AAGCACGATGACGACGCAGAGGGCCGTTTGGTTAAAGCTTTGAGTGATGT
TGCCGCGGTGACCGTGCACCCGAACCGGGCCATTGTCTCGCTCATTGCTA
ATGTGGCTAGGTCATCAGAGGTCCTTTCCATTGTGTTCGATGCCCTCAAA
GAGGCTGGAATTCAAGTGGAGATGCTTTCGCAGGGTGCCAGCAAAGTCAA
CATCAGCCTCATCGTCAAAGACGAAGATGCAGAGCGTTGCACCCAGATCC
TCCACGATCGATTCTTCTACCCCAATGGTGCGCCTCCGGTTGAAGCCCAG
TGAGGAAATTCGGTAGGCAAGAGGTATGAGGGAATGTGGGGGGTGGTGCC
ATTAGAGACGTGTGTAGCGGAGGCATGACGTAAAATAAATGAAATATTAT
GGGTAAAATTCTTTAAAGAGGGTATGATGACAAGCCTTTTTTTGACACAA
GACTACAAGAAAGAAAGATTGAACACGTGGTAACGGCGGTCTCTCACAAG
TTATTCA back to topCoding sequence (CDS) from alignment at scaffold_7:646271..648677+ >mRNA_3095 ID=mRNA_3095|Name=jgi.p|Nanoce1779_2|584550|organism=Nannochloropsis oceanica|type=CDS|length=4995bp|location=Sequence derived from alignment at scaffold_7:646271..648677+ (Nannochloropsis oceanica)
ATGCGCGTGCCACCGCAGACATGCTTACTCGTCCTGCTGGCGATGGCCGC
ACACCAATGCGCGCATGCTTTCGTGCCGCACTTCGCCTCCACCAAGGGGG
CAGCGCCATCCGTGCATACTTTCATTGGTCCAAGCAGCCGCGAAGGGCTT
TTGGATGCGACAGCAGCCGAAAGTAAAGACCAGAGACGGAAAGGCTGGAC
CCTCATGGTGGCGCTCCCCACGGCCAGTGTCAAAACCGAATCAGCGGCCG
TAGCGCCTGCAGCAGGCAATGAGCCCCCCAAGCAAAAGACAACACGCGTC
ATCATGAAGTTCGGCGGCAGTTCCCTGGCCAATTCAGAGCGCGTGGACTA
CGTGGCAAAATTAATCAAATCCCAGATCGAAAAGGGCTTCCGACCCACGG
TCGTCTGCTCGGCCATGGGCAAAACCACCAACAACCTGCTCAACGCCGGG
CATTTCGCTTTGGAGGGTAACGTGTACGTGGATTCCCTCCGGACTTTGCA
TTTGACGACGGCTCAAGAGTTGGGCATGGGCAATGATACGATTGCTTCGA
TTGAGGAGCTGCTGGACGAGTTGAAGAATTTGCTGAACGGGGTGTCGTAC
TTGCGGGAGCTGACACCGCGCACACTCGACTATTTGGTATCCTTCGGCGA
GCGTCTGTCCGTGCGCATCATGGCCGCCCGCCTGAACCAACTCGGCGTAC
CCGCGCAGCACTTCGAGTCCTGGAATCTTGGGCTGCGGACCACGAGCGAC
TTCGGCAAGGCTGAAATCTTGCCCGAGTGCTACGACACAATCAAAACAGC
AATGAAAAAGCTCGACGGCTCAATGGTAGCAGTTGTAACGGGCTTCATCG
GCCATGATCCCGAAGGGCGAATCACCACGCTAGGTCGAGGCGGCTCTGAT
CTGACGGCATCGACACTGGGTGCGGCGGTGCCGGTGGATGAAATCCAGGT
CTGGAAGGACGTAAATGGCATTATGACAGCTAACCCCAGGGTGGTATCCA
ATGCTATCCCTGTTCCCTTTGTCTCGTTCGAAGAGGCCTCAGAACTGGCA
TATTTTGGAGCCGAAATTCTTCACCCGATTAGTATGGGACCGGCGATGCG
GTTCAATATCCCTGTGCGTGTAAAGAACTCTTACAATCCTGATCATCCGG
GTACTGTCATTTGGGACGATAATGACAAGACGCAGTTGGTGACGGCGATT
ACGAGCAAGCGGCATGTGGATCTGGTGGACATCGTCAGTACGTGGATGTT
GGGGCAGTACGGGTTTTTGAGCCGGGTTTTCAGCATTTTCGAGGAACAGA
AGATTTCGGTGGACTGCGTGGCGACCAGTGAGGTGTCTATTTCTCTTACT
CTAGATGCGAAGAAGCACGATGACGACGCAGAGGGCCGTTTGGTTAAAGC
TTTGAGTGATGTTGCCGCGGTGACCGTGCACCCGAACCGGGCCATTGTCT
CGCTCATTGCTAATGTGGCTAGGTCATCAGAGGTCCTTTCCATTGTGTTC
GATGCCCTCAAAGAGGCTGGAATTCAAGTGGAGATGCTTTCGCAGGGTGC
CAGCAAAGTCAACATCAGCCTCATCGTCAAAGACGAAGATGCAGAGCGTT
GCACCCAGATCCTCCACGATCGATTCTTCTACCCCAATGGTGCGCCTCCG
GTTGAAGCCCAGTGAATGCGCGTGCCACCGCAGACATGCTTACTCGTCCT
GCTGGCGATGGCCGCACACCAATGCGCGCATGCTTTCGTGCCGCACTTCG
CCTCCACCAAGGGGGCAGCGCCATCCGTGCATACTTTCATTGGTCCAAGC
AGCCGCGAAGGGCTTTTGGATGCGACAGCAGCCGAAAGTAAAGACCAGAG
ACGGAAAGGCTGGACCCTCATGGTGGCGCTCCCCACGGCCAGTGTCAAAA
CCGAATCAGCGGCCGTAGCGCCTGCAGCAGGCAATGAGCCCCCCAAGCAA
AAGACAACACGCGTCATCATGAAGTTCGGCGGCAGTTCCCTGGCCAATTC
AGAGCGCGTGGACTACGTGGCAAAATTAATCAAATCCCAGATCGAAAAGG
GCTTCCGACCCACGGTCGTCTGCTCGGCCATGGGCAAAACCACCAACAAC
CTGCTCAACGCCGGGCATTTCGCTTTGGAGGGTAACGTGTACGTGGATTC
CCTCCGGACTTTGCATTTGACGACGGCTCAAGAGTTGGGCATGGGCAATG
ATACGATTGCTTCGATTGAGGAGCTGCTGGACGAGTTGAAGAATTTGCTG
AACGGGGTGTCGTACTTGCGGGAGCTGACACCGCGCACACTCGACTATTT
GGTATCCTTCGGCGAGCGTCTGTCCGTGCGCATCATGGCCGCCCGCCTGA
ACCAACTCGGCGTACCCGCGCAGCACTTCGAGTCCTGGAATCTTGGGCTG
CGGACCACGAGCGACTTCGGCAAGGCTGAAATCTTGCCCGAGTGCTACGA
CACAATCAAAACAGCAATGAAAAAGCTCGACGGCTCAATGGTAGCAGTTG
TAACGGGCTTCATCGGCCATGATCCCGAAGGGCGAATCACCACGCTAGGT
CGAGGCGGCTCTGATCTGACGGCATCGACACTGGGTGCGGCGGTGCCGGT
GGATGAAATCCAGGTCTGGAAGGACGTAAATGGCATTATGACAGCTAACC
CCAGGGTGGTATCCAATGCTATCCCTGTTCCCTTTGTCTCGTTCGAAGAG
GCCTCAGAACTGGCATATTTTGGAGCCGAAATTCTTCACCCGATTAGTAT
GGGACCGGCGATGCGGTTCAATATCCCTGTGCGTGTAAAGAACTCTTACA
ATCCTGATCATCCGGGTACTGTCATTTGGGACGATAATGACAAGACGCAG
TTGGTGACGGCGATTACGAGCAAGCGGCATGTGGATCTGGTGGACATCGT
CAGTACGTGGATGTTGGGGCAGTACGGGTTTTTGAGCCGGGTTTTCAGCA
TTTTCGAGGAACAGAAGATTTCGGTGGACTGCGTGGCGACCAGTGAGGTG
TCTATTTCTCTTACTCTAGATGCGAAGAAGCACGATGACGACGCAGAGGG
CCGTTTGGTTAAAGCTTTGAGTGATGTTGCCGCGGTGACCGTGCACCCGA
ACCGGGCCATTGTCTCGCTCATTGCTAATGTGGCTAGGTCATCAGAGGTC
CTTTCCATTGTGTTCGATGCCCTCAAAGAGGCTGGAATTCAAGTGGAGAT
GCTTTCGCAGGGTGCCAGCAAAGTCAACATCAGCCTCATCGTCAAAGACG
AAGATGCAGAGCGTTGCACCCAGATCCTCCACGATCGATTCTTCTACCCC
AATGGTGCGCCTCCGGTTGAAGCCCAGTGAATGCGCGTGCCACCGCAGAC
ATGCTTACTCGTCCTGCTGGCGATGGCCGCACACCAATGCGCGCATGCTT
TCGTGCCGCACTTCGCCTCCACCAAGGGGGCAGCGCCATCCGTGCATACT
TTCATTGGTCCAAGCAGCCGCGAAGGGCTTTTGGATGCGACAGCAGCCGA
AAGTAAAGACCAGAGACGGAAAGGCTGGACCCTCATGGTGGCGCTCCCCA
CGGCCAGTGTCAAAACCGAATCAGCGGCCGTAGCGCCTGCAGCAGGCAAT
GAGCCCCCCAAGCAAAAGACAACACGCGTCATCATGAAGTTCGGCGGCAG
TTCCCTGGCCAATTCAGAGCGCGTGGACTACGTGGCAAAATTAATCAAAT
CCCAGATCGAAAAGGGCTTCCGACCCACGGTCGTCTGCTCGGCCATGGGC
AAAACCACCAACAACCTGCTCAACGCCGGGCATTTCGCTTTGGAGGGTAA
CGTGTACGTGGATTCCCTCCGGACTTTGCATTTGACGACGGCTCAAGAGT
TGGGCATGGGCAATGATACGATTGCTTCGATTGAGGAGCTGCTGGACGAG
TTGAAGAATTTGCTGAACGGGGTGTCGTACTTGCGGGAGCTGACACCGCG
CACACTCGACTATTTGGTATCCTTCGGCGAGCGTCTGTCCGTGCGCATCA
TGGCCGCCCGCCTGAACCAACTCGGCGTACCCGCGCAGCACTTCGAGTCC
TGGAATCTTGGGCTGCGGACCACGAGCGACTTCGGCAAGGCTGAAATCTT
GCCCGAGTGCTACGACACAATCAAAACAGCAATGAAAAAGCTCGACGGCT
CAATGGTAGCAGTTGTAACGGGCTTCATCGGCCATGATCCCGAAGGGCGA
ATCACCACGCTAGGTCGAGGCGGCTCTGATCTGACGGCATCGACACTGGG
TGCGGCGGTGCCGGTGGATGAAATCCAGGTCTGGAAGGACGTAAATGGCA
TTATGACAGCTAACCCCAGGGTGGTATCCAATGCTATCCCTGTTCCCTTT
GTCTCGTTCGAAGAGGCCTCAGAACTGGCATATTTTGGAGCCGAAATTCT
TCACCCGATTAGTATGGGACCGGCGATGCGGTTCAATATCCCTGTGCGTG
TAAAGAACTCTTACAATCCTGATCATCCGGGTACTGTCATTTGGGACGAT
AATGACAAGACGCAGTTGGTGACGGCGATTACGAGCAAGCGGCATGTGGA
TCTGGTGGACATCGTCAGTACGTGGATGTTGGGGCAGTACGGGTTTTTGA
GCCGGGTTTTCAGCATTTTCGAGGAACAGAAGATTTCGGTGGACTGCGTG
GCGACCAGTGAGGTGTCTATTTCTCTTACTCTAGATGCGAAGAAGCACGA
TGACGACGCAGAGGGCCGTTTGGTTAAAGCTTTGAGTGATGTTGCCGCGG
TGACCGTGCACCCGAACCGGGCCATTGTCTCGCTCATTGCTAATGTGGCT
AGGTCATCAGAGGTCCTTTCCATTGTGTTCGATGCCCTCAAAGAGGCTGG
AATTCAAGTGGAGATGCTTTCGCAGGGTGCCAGCAAAGTCAACATCAGCC
TCATCGTCAAAGACGAAGATGCAGAGCGTTGCACCCAGATCCTCCACGAT
CGATTCTTCTACCCCAATGGTGCGCCTCCGGTTGAAGCCCAGTGA back to top
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