jgi.p|Nanoce1779_2|584548, mRNA_3094 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584548
Unique NamemRNA_3094
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1503
Alignment locationscaffold_7:644110..645907 -

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Properties
Property NameValue
TranscriptId584634
TrackFilteredModels2
ProteinId584548
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:644110..645907 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584548gene_3094Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584548mRNA_3094-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3094CDS_3094Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3094 ID=mRNA_3094|Name=jgi.p|Nanoce1779_2|584548|organism=Nannochloropsis oceanica|type=mRNA|length=1503bp
ACAGACAGGCAGACGATAAAAGGGAAATGGGACTCGACGTGAAGGAGAAA
GCACTCCTGAGCTTTGTAGCCAAGGTGACGCTGCCGCTCGTGGCCGTGCT
GGGGCCAATCGTAGCTTACACTGGCATTTGGGAACACCCTTTGTGGGTCT
TGGGGCTGATGACGGCGGGCGTCTACACTGCCAAGCTCTTATCCTACGTG
GCCGAGCGCCTTACGCGTGGACGCAAAGACATGGTGGGGAGCTATGGAAA
GTGGGCTATCGTCACGGGCGCCACCTCGGGCATTGGTGAAGCGTTTGCGC
ACGAGCTGGCCGGGCGGGGGATGAACGTGCTGATCATTAGTCGCACGCCG
GCCAAGCTCGAAAAGACCAGGGAAGAGGTTCTCCGGCGTGCTCCGGAAGG
CGTGGAGGTGGAAGTGTTGGCATACGACTTTACCCGCATGGCCGAGGCTG
ATGCATTTTATGCACGCTTGAGTGAAGTGGCGGTGGCGCTGCACAAGAAG
GGCGGGATCGGCATGCTCGTGAATAATGTGGGGACCAACGTGGAAATCCC
GGAGTTTTTGCACGAGCTGCCGGAAAGCGAGATTCTAAACATAGTGCGCG
TGAATGTGGAGGGCACAGTGCGCATGACACGGGCTATTTTGCCCTTCATG
GCTGAACGACACATGGGTGCCATTGTCAATGTCTCGTCGGGCTCGGGGAA
CCACCCCACTCCCCTCCTTTCCACCTACGCAGCCACCAAGGCCTTCATCA
ACGAATTTTCCCGCTCCCTGCACCATGAGGCCAAGCACGTGGGCGTTGAT
GTCCTGCTCATCACCCCCTACTACGTCTCCACCCCCGGCATGTACAATAA
ACCGCCCGGCCTCCTCAACTGCTCGGCGCAACGCCTTGTTCAAGACACGC
TGGCCGTGCTGGGACGGTACGACATGGCCTATCCTTACATCGCACACGCT
GTCCTGGGCACCCTGATGGACAAGTACTGGGCCACGCCCGCAGCGCTATT
CAAGTCCATGAACAAAACCCGGATGCGTTCCTTGTCCAAGAAGCAAGGGC
AAAAACAGGGGACCTCGTCGGCGCAGGGAAAGATCAAGGCCGCTGCTTAA
GGTGGTCGCGTGGGGGCGAGGAATGGGTTCTTTGTGTTGAAAATGACTTT
GTGTACCCGGAAGGAAATAGCGCGACAAATTTCTCAAAGAGGATTAAGGG
AAAATATATGACTACGCGCAAAACTCCTTCAATGCACATTCATGTTCTGA
GTTTTCCCCTTGTTTTCGCATTGCTTTTCCACCTTATCGGAACGTAAGAA
GTGAAACGCAAGAGTAGCGAACCTCGCTCGGTGGCCCCCGTATAGCCGGA
GGCTCCCTTGGCTTGCACCCACCCGTAATATGGCACACGATCCATGGTTT
TATGTGTACGCGGCCATATATGCGGCAGGTTGCAGGCTGTTGCTGTGAGG
CTATTGCTGTGTGTGTATGACCGCCGGGGTCAATCGCAAGAGCGCCCGAA
GAG
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protein sequence of jgi.p|Nanoce1779_2|584548

>mRNA_3094-protein ID=mRNA_3094-protein|Name=jgi.p|Nanoce1779_2|584548|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MGLDVKEKALLSFVAKVTLPLVAVLGPIVAYTGIWEHPLWVLGLMTAGVY
TAKLLSYVAERLTRGRKDMVGSYGKWAIVTGATSGIGEAFAHELAGRGMN
VLIISRTPAKLEKTREEVLRRAPEGVEVEVLAYDFTRMAEADAFYARLSE
VAVALHKKGGIGMLVNNVGTNVEIPEFLHELPESEILNIVRVNVEGTVRM
TRAILPFMAERHMGAIVNVSSGSGNHPTPLLSTYAATKAFINEFSRSLHH
EAKHVGVDVLLITPYYVSTPGMYNKPPGLLNCSAQRLVQDTLAVLGRYDM
AYPYIAHAVLGTLMDKYWATPAALFKSMNKTRMRSLSKKQGQKQGTSSAQ
GKIKAAA*
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mRNA from alignment at scaffold_7:644110..645907-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3094 ID=mRNA_3094|Name=jgi.p|Nanoce1779_2|584548|organism=Nannochloropsis oceanica|type=mRNA|length=1798bp|location=Sequence derived from alignment at scaffold_7:644110..645907- (Nannochloropsis oceanica)
ACAGACAGGCAGACGATAAAAGGGAAATGGGACTCGACGTGAAGGAGAAA
GCACTCCTGAGCTTTGTAGCCAAGGTGACGCTGCCGCTCGTGGCCGTGCT
GGGGCCAATCGTAGCTTACACTGGCATTTGGGAACACCCTTTGTGGGTCT
TGGGGCTGATGACGGCGGGCGTCTACACTGCCAAGCTCTTATCCTACGTG
GCCGAGCGCCTTACGCGTGGACGCAAAGACATGGTGGGGAGCTATGGAAA
GTGGGCTATCGTCACGGGCGCCACCTCGGGCATTGGTGAAGCGTTTGCGC
ACGAGCTGGCCGGGCGGGGGATGAACGTGCTGATCATTAGTCGCACGCCG
GCCAAGCTCGAAAAGACCAGGGAAGAGGTTCTCCGGCGTGCTCCGGAAGG
CGTGGAGGTGGAAGTGTTGGCATACGACTTTACCCGCATGGCCGAGGCTG
ATGCATTTTATGCACGCTTGAGTGAAGTGGCGGTGGCGCTGCACAAGAAG
GGCGGGATCGGCATGCTCGTGAATAATGTGGGGACCAACGTGGAAATCCC
GGAGTTTTTGCACGAGCTGCCGGAAAGCGAGATTCTAAACATAGTGCGCG
TGAATGTGGAGGGCACAGTGCGCATGACACGGGCTATTTTGCCCTTCATG
GCTGAACGGTACGTTTTTTTGAGATTTTGTTTTTGTTTTCTGGTTGGTGC
CTGTGCTGTTGACCTAAACCTTCGTGGTTCATTGTGATTAGTGGGTCGTG
TAGCCAGCGTACATTTGTCCCATTCACTGTTGAGATGCTTTTTTATGTCG
TTCTTTTTCGGCAAATCTCCGCCAGACTCCTCGGGGGGCCAAGGCAGACC
AGCCTGTCTTCCTCCTCCCCCATGTATATCTCCTGGTATCGCTCTATCCC
TGATTGCATTCACCGTACGCTCATTGTCCTTCTCCTTTACATCGCGCATA
CAGACACATGGGTGCCATTGTCAATGTCTCGTCGGGCTCGGGGAACCACC
CCACTCCCCTCCTTTCCACCTACGCAGCCACCAAGGCCTTCATCAACGAA
TTTTCCCGCTCCCTGCACCATGAGGCCAAGCACGTGGGCGTTGATGTCCT
GCTCATCACCCCCTACTACGTCTCCACCCCCGGCATGTACAATAAACCGC
CCGGCCTCCTCAACTGCTCGGCGCAACGCCTTGTTCAAGACACGCTGGCC
GTGCTGGGACGGTACGACATGGCCTATCCTTACATCGCACACGCTGTCCT
GGGCACCCTGATGGACAAGTACTGGGCCACGCCCGCAGCGCTATTCAAGT
CCATGAACAAAACCCGGATGCGTTCCTTGTCCAAGAAGCAAGGGCAAAAA
CAGGGGACCTCGTCGGCGCAGGGAAAGATCAAGGCCGCTGCTTAAGGTGG
TCGCGTGGGGGCGAGGAATGGGTTCTTTGTGTTGAAAATGACTTTGTGTA
CCCGGAAGGAAATAGCGCGACAAATTTCTCAAAGAGGATTAAGGGAAAAT
ATATGACTACGCGCAAAACTCCTTCAATGCACATTCATGTTCTGAGTTTT
CCCCTTGTTTTCGCATTGCTTTTCCACCTTATCGGAACGTAAGAAGTGAA
ACGCAAGAGTAGCGAACCTCGCTCGGTGGCCCCCGTATAGCCGGAGGCTC
CCTTGGCTTGCACCCACCCGTAATATGGCACACGATCCATGGTTTTATGT
GTACGCGGCCATATATGCGGCAGGTTGCAGGCTGTTGCTGTGAGGCTATT
GCTGTGTGTGTATGACCGCCGGGGTCAATCGCAAGAGCGCCCGAAGAG
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Coding sequence (CDS) from alignment at scaffold_7:644110..645907-

>mRNA_3094 ID=mRNA_3094|Name=jgi.p|Nanoce1779_2|584548|organism=Nannochloropsis oceanica|type=CDS|length=2148bp|location=Sequence derived from alignment at scaffold_7:644110..645907- (Nannochloropsis oceanica)
ACACATGGGTGCCATTGTCAATGTCTCGTCGGGCTCGGGGAACCACCCCA
CTCCCCTCCTTTCCACCTACGCAGCCACCAAGGCCTTCATCAACGAATTT
TCCCGCTCCCTGCACCATGAGGCCAAGCACGTGGGCGTTGATGTCCTGCT
CATCACCCCCTACTACGTCTCCACCCCCGGCATGTACAATAAACCGCCCG
GCCTCCTCAACTGCTCGGCGCAACGCCTTGTTCAAGACACGCTGGCCGTG
CTGGGACGGTACGACATGGCCTATCCTTACATCGCACACGCTGTCCTGGG
CACCCTGATGGACAAGTACTGGGCCACGCCCGCAGCGCTATTCAAGTCCA
TGAACAAAACCCGGATGCGTTCCTTGTCCAAGAAGCAAGGGCAAAAACAG
GGGACCTCGTCGGCGCAGGGAAAGATCAAGGCCGCTGCTTAAATGGGACT
CGACGTGAAGGAGAAAGCACTCCTGAGCTTTGTAGCCAAGGTGACGCTGC
CGCTCGTGGCCGTGCTGGGGCCAATCGTAGCTTACACTGGCATTTGGGAA
CACCCTTTGTGGGTCTTGGGGCTGATGACGGCGGGCGTCTACACTGCCAA
GCTCTTATCCTACGTGGCCGAGCGCCTTACGCGTGGACGCAAAGACATGG
TGGGGAGCTATGGAAAGTGGGCTATCGTCACGGGCGCCACCTCGGGCATT
GGTGAAGCGTTTGCGCACGAGCTGGCCGGGCGGGGGATGAACGTGCTGAT
CATTAGTCGCACGCCGGCCAAGCTCGAAAAGACCAGGGAAGAGGTTCTCC
GGCGTGCTCCGGAAGGCGTGGAGGTGGAAGTGTTGGCATACGACTTTACC
CGCATGGCCGAGGCTGATGCATTTTATGCACGCTTGAGTGAAGTGGCGGT
GGCGCTGCACAAGAAGGGCGGGATCGGCATGCTCGTGAATAATGTGGGGA
CCAACGTGGAAATCCCGGAGTTTTTGCACGAGCTGCCGGAAAGCGAGATT
CTAAACATAGTGCGCGTGAATGTGGAGGGCACAGTGCGCATGACACGGGC
TATTTTGCCCTTCATGGCTGAACGACACATGGGTGCCATTGTCAATGTCT
CGTCGGGCTCGGGGAACCACCCCACTCCCCTCCTTTCCACCTACGCAGCC
ACCAAGGCCTTCATCAACGAATTTTCCCGCTCCCTGCACCATGAGGCCAA
GCACGTGGGCGTTGATGTCCTGCTCATCACCCCCTACTACGTCTCCACCC
CCGGCATGTACAATAAACCGCCCGGCCTCCTCAACTGCTCGGCGCAACGC
CTTGTTCAAGACACGCTGGCCGTGCTGGGACGGTACGACATGGCCTATCC
TTACATCGCACACGCTGTCCTGGGCACCCTGATGGACAAGTACTGGGCCA
CGCCCGCAGCGCTATTCAAGTCCATGAACAAAACCCGGATGCGTTCCTTG
TCCAAGAAGCAAGGGCAAAAACAGGGGACCTCGTCGGCGCAGGGAAAGAT
CAAGGCCGCTGCTTAAATGGGACTCGACGTGAAGGAGAAAGCACTCCTGA
GCTTTGTAGCCAAGGTGACGCTGCCGCTCGTGGCCGTGCTGGGGCCAATC
GTAGCTTACACTGGCATTTGGGAACACCCTTTGTGGGTCTTGGGGCTGAT
GACGGCGGGCGTCTACACTGCCAAGCTCTTATCCTACGTGGCCGAGCGCC
TTACGCGTGGACGCAAAGACATGGTGGGGAGCTATGGAAAGTGGGCTATC
GTCACGGGCGCCACCTCGGGCATTGGTGAAGCGTTTGCGCACGAGCTGGC
CGGGCGGGGGATGAACGTGCTGATCATTAGTCGCACGCCGGCCAAGCTCG
AAAAGACCAGGGAAGAGGTTCTCCGGCGTGCTCCGGAAGGCGTGGAGGTG
GAAGTGTTGGCATACGACTTTACCCGCATGGCCGAGGCTGATGCATTTTA
TGCACGCTTGAGTGAAGTGGCGGTGGCGCTGCACAAGAAGGGCGGGATCG
GCATGCTCGTGAATAATGTGGGGACCAACGTGGAAATCCCGGAGTTTTTG
CACGAGCTGCCGGAAAGCGAGATTCTAAACATAGTGCGCGTGAATGTGGA
GGGCACAGTGCGCATGACACGGGCTATTTTGCCCTTCATGGCTGAACG
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Synonyms
Publications