jgi.p|Nanoce1779_2|584542, mRNA_3093 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584542
Unique Name	mRNA_3093
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2031
Alignment location	scaffold_7:640977..643007 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584628
Track	FilteredModels2
ProteinId	584542

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:640977..643007 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584542	gene_3093	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584542	mRNA_3093-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3093	CDS_3093	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:640977..643007-
coding sequence from alignment at scaffold_7:640977..643007-

mRNA sequence

>mRNA_3093 ID=mRNA_3093|Name=jgi.p|Nanoce1779_2|584542|organism=Nannochloropsis oceanica|type=mRNA|length=2031bp
AGGGTGGGGAGGAGAAGGAGGACACAGAAGGCAAGGCTAGCTACAGAAGG
GAGTTACTGAATCTTAAGAACTTCTTGGCAGAGGCCGACAGTATTGACCA
AAGGCTTGTCAAAGAGCCCGGAAGGATAGCCGCCCAAGCAATGATCAAGG
AGATCGGTCAGCTACAACACTACTGCCGACGAGGCATCGCTGCCACCGAG
GCGGAGCTGGCGCGTTTACGGGACGAGGCGCATGAGAAACAGCGGTTGGA
CGGGGTGCGCGAAGTAAGGGTGGCACAGGCGAAGGCCTTAAAGGAATCGG
ATCGTCGTTGGCGTGTGGGTTTAGAAGGGCATTCTTTGCTGAAGGAAGCA
CGTCAGAGCAAGCTGTGTGTGTCGTTTATTAAGGGCACGGAGTTGGCCCT
GGCGGAGTCAAGGGATTTGGTGTTGCGGGAAGCACACAAAATAATAAATC
TTGAGGAGTATTTTCAGCGACTGCAAGCGTCGCTCAAGGAAGCAGAGAAT
AAGGTGAGCAGCACGCTTCACTTGTTGAGGATGGACGGGGAGGCACGGGA
GGTGGAGGAATCGTTCAAGGCTTTATGCAACAGCATGAAAGAGGCAGGTG
AAGATGCTTTAGCCAAGCGGGGAGAGAGCGGAGAGGTTTCTATGGATGAC
GCTGTTAAGATGGATAGTGGGCTTGATGCGATCTTGCCACGTTTCTTGCA
CCATGCGAGCCGGGCAACGACGTATAGGAAGGCCTTGGCAGCTGCGTTGC
TGTTGAATGAACGGCGGCAGTCAGAGAATATGCAACAGAAGAACGAAAAA
GAGCAGGTGGAGGAATTTTGCCTCGTTTGCCGTGAGCTGCAGGGGCACGT
TCGAAGCTTGCTTCCGGCGTGGGATTTGTATTCCAAGCTGCGCCTGTGGC
AAGTGCGTTTGAAGCGCTTGTGGCAGCATTCGGTCCATTGGCTCGGCGGG
GAGAGAAGGACAATGAAGAAACAGAAGAAGAGGAAGAGAGACGGGGATAG
AGAAAGAGAAGGGGAGGGGCAGGAACCGGTGCCTGCTGTTGTGAATGCTT
TTGGAGCTGCCAAGCTGGCCTTACAAGCAGCAGTTGCTCTTCTCCAGAAG
ATGAATGATGAAAGTGAGGACGACAAGGACAATGATGATGAAGAAAACGT
TGTAGCGATGGCCGTATTTACTCTACAGAAAGCGGTAGGAGACGCCGAGG
TAGCGATTTCCAAATATAAAGAGAAGGAAAGAATGCGAAGGGAGGTCCGT
AGGCGTCTAGAAGAGGAAAAAGCGCTCGAGGAACGCAATCGCGACCAAGT
GATGCGAGCCAAGGCGCGGGAAGAAATTTTGGGTAAACGTCAGCTTGAGC
GGTTGGAGCGGCGAAGGGTGCATTTGGAAGCGAGTCTGAAGAGGGAAGAG
GCTCGAGACCGGCTGAAGGAAATAAGGGCGGCGGGCTTCCTGCCTTTCCT
GGAGGCGGAGGCCGAGGTGAAAGGAAAGGAAGATGAGGGCATTTCTTTGA
GCGTGATGGGAGTGGAGGGTTCCAAGGCTGTGGTTATCGCGCCGTCGCCG
ATCGAAGAGAGAGAGAGATGGGGCATGGTTCCGATGCAGGCAGAGCCTTC
GCTCAATCTCACGTTGACTCACTTCCTGCCAAACATTGTTTCCGCCGACT
ATTGGGTGAGGGAGAAGCAACGAGAAGCCGATGGAGTGGAAAGCGTGAGA
GCTGGATATCTGCGAAGCGAGGTCGTTGCCATCGGAGCAGATGGAGTGGT
AGTATCTACGGCAGCAAAAACAGCAACAGGGAAGGGACGTCAGAGCGACC
ATCTAAAAGTAAATAGCACTCGCTCTAGCCCACACGAGTCTCGCAGAAAG
CGAGGCCACACAAGGAGTATAGGAAATGACTGTTTTTTAGATAAGCCGCG
TAGTGTCGTCATGATGGCCAGTTCTTGATTAAAAAATTGGTTCGATCGGT
TCCCCTCGACGACAACAAAAATAACATAACAAATTGGAAACAAAAGTAAC
TGGGAAAACCTATGAATTATAGTGTGCCGCG

protein sequence of jgi.p|Nanoce1779_2|584542

>mRNA_3093-protein ID=mRNA_3093-protein|Name=jgi.p|Nanoce1779_2|584542|organism=Nannochloropsis oceanica|type=polypeptide|length=596bp
MIKEIGQLQHYCRRGIAATEAELARLRDEAHEKQRLDGVREVRVAQAKAL
KESDRRWRVGLEGHSLLKEARQSKLCVSFIKGTELALAESRDLVLREAHK
IINLEEYFQRLQASLKEAENKVSSTLHLLRMDGEAREVEESFKALCNSMK
EAGEDALAKRGESGEVSMDDAVKMDSGLDAILPRFLHHASRATTYRKALA
AALLLNERRQSENMQQKNEKEQVEEFCLVCRELQGHVRSLLPAWDLYSKL
RLWQVRLKRLWQHSVHWLGGERRTMKKQKKRKRDGDREREGEGQEPVPAV
VNAFGAAKLALQAAVALLQKMNDESEDDKDNDDEENVVAMAVFTLQKAVG
DAEVAISKYKEKERMRREVRRRLEEEKALEERNRDQVMRAKAREEILGKR
QLERLERRRVHLEASLKREEARDRLKEIRAAGFLPFLEAEAEVKGKEDEG
ISLSVMGVEGSKAVVIAPSPIEERERWGMVPMQAEPSLNLTLTHFLPNIV
SADYWVREKQREADGVESVRAGYLRSEVVAIGADGVVVSTAAKTATGKGR
QSDHLKVNSTRSSPHESRRKRGHTRSIGNDCFLDKPRSVVMMASS*

mRNA from alignment at scaffold_7:640977..643007-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3093 ID=mRNA_3093|Name=jgi.p|Nanoce1779_2|584542|organism=Nannochloropsis oceanica|type=mRNA|length=2031bp|location=Sequence derived from alignment at scaffold_7:640977..643007- (Nannochloropsis oceanica)
AGGGTGGGGAGGAGAAGGAGGACACAGAAGGCAAGGCTAGCTACAGAAGG
GAGTTACTGAATCTTAAGAACTTCTTGGCAGAGGCCGACAGTATTGACCA
AAGGCTTGTCAAAGAGCCCGGAAGGATAGCCGCCCAAGCAATGATCAAGG
AGATCGGTCAGCTACAACACTACTGCCGACGAGGCATCGCTGCCACCGAG
GCGGAGCTGGCGCGTTTACGGGACGAGGCGCATGAGAAACAGCGGTTGGA
CGGGGTGCGCGAAGTAAGGGTGGCACAGGCGAAGGCCTTAAAGGAATCGG
ATCGTCGTTGGCGTGTGGGTTTAGAAGGGCATTCTTTGCTGAAGGAAGCA
CGTCAGAGCAAGCTGTGTGTGTCGTTTATTAAGGGCACGGAGTTGGCCCT
GGCGGAGTCAAGGGATTTGGTGTTGCGGGAAGCACACAAAATAATAAATC
TTGAGGAGTATTTTCAGCGACTGCAAGCGTCGCTCAAGGAAGCAGAGAAT
AAGGTGAGCAGCACGCTTCACTTGTTGAGGATGGACGGGGAGGCACGGGA
GGTGGAGGAATCGTTCAAGGCTTTATGCAACAGCATGAAAGAGGCAGGTG
AAGATGCTTTAGCCAAGCGGGGAGAGAGCGGAGAGGTTTCTATGGATGAC
GCTGTTAAGATGGATAGTGGGCTTGATGCGATCTTGCCACGTTTCTTGCA
CCATGCGAGCCGGGCAACGACGTATAGGAAGGCCTTGGCAGCTGCGTTGC
TGTTGAATGAACGGCGGCAGTCAGAGAATATGCAACAGAAGAACGAAAAA
GAGCAGGTGGAGGAATTTTGCCTCGTTTGCCGTGAGCTGCAGGGGCACGT
TCGAAGCTTGCTTCCGGCGTGGGATTTGTATTCCAAGCTGCGCCTGTGGC
AAGTGCGTTTGAAGCGCTTGTGGCAGCATTCGGTCCATTGGCTCGGCGGG
GAGAGAAGGACAATGAAGAAACAGAAGAAGAGGAAGAGAGACGGGGATAG
AGAAAGAGAAGGGGAGGGGCAGGAACCGGTGCCTGCTGTTGTGAATGCTT
TTGGAGCTGCCAAGCTGGCCTTACAAGCAGCAGTTGCTCTTCTCCAGAAG
ATGAATGATGAAAGTGAGGACGACAAGGACAATGATGATGAAGAAAACGT
TGTAGCGATGGCCGTATTTACTCTACAGAAAGCGGTAGGAGACGCCGAGG
TAGCGATTTCCAAATATAAAGAGAAGGAAAGAATGCGAAGGGAGGTCCGT
AGGCGTCTAGAAGAGGAAAAAGCGCTCGAGGAACGCAATCGCGACCAAGT
GATGCGAGCCAAGGCGCGGGAAGAAATTTTGGGTAAACGTCAGCTTGAGC
GGTTGGAGCGGCGAAGGGTGCATTTGGAAGCGAGTCTGAAGAGGGAAGAG
GCTCGAGACCGGCTGAAGGAAATAAGGGCGGCGGGCTTCCTGCCTTTCCT
GGAGGCGGAGGCCGAGGTGAAAGGAAAGGAAGATGAGGGCATTTCTTTGA
GCGTGATGGGAGTGGAGGGTTCCAAGGCTGTGGTTATCGCGCCGTCGCCG
ATCGAAGAGAGAGAGAGATGGGGCATGGTTCCGATGCAGGCAGAGCCTTC
GCTCAATCTCACGTTGACTCACTTCCTGCCAAACATTGTTTCCGCCGACT
ATTGGGTGAGGGAGAAGCAACGAGAAGCCGATGGAGTGGAAAGCGTGAGA
GCTGGATATCTGCGAAGCGAGGTCGTTGCCATCGGAGCAGATGGAGTGGT
AGTATCTACGGCAGCAAAAACAGCAACAGGGAAGGGACGTCAGAGCGACC
ATCTAAAAGTAAATAGCACTCGCTCTAGCCCACACGAGTCTCGCAGAAAG
CGAGGCCACACAAGGAGTATAGGAAATGACTGTTTTTTAGATAAGCCGCG
TAGTGTCGTCATGATGGCCAGTTCTTGATTAAAAAATTGGTTCGATCGGT
TCCCCTCGACGACAACAAAAATAACATAACAAATTGGAAACAAAAGTAAC
TGGGAAAACCTATGAATTATAGTGTGCCGCG

Coding sequence (CDS) from alignment at scaffold_7:640977..643007-

>mRNA_3093 ID=mRNA_3093|Name=jgi.p|Nanoce1779_2|584542|organism=Nannochloropsis oceanica|type=CDS|length=1788bp|location=Sequence derived from alignment at scaffold_7:640977..643007- (Nannochloropsis oceanica)
ATGATCAAGGAGATCGGTCAGCTACAACACTACTGCCGACGAGGCATCGC
TGCCACCGAGGCGGAGCTGGCGCGTTTACGGGACGAGGCGCATGAGAAAC
AGCGGTTGGACGGGGTGCGCGAAGTAAGGGTGGCACAGGCGAAGGCCTTA
AAGGAATCGGATCGTCGTTGGCGTGTGGGTTTAGAAGGGCATTCTTTGCT
GAAGGAAGCACGTCAGAGCAAGCTGTGTGTGTCGTTTATTAAGGGCACGG
AGTTGGCCCTGGCGGAGTCAAGGGATTTGGTGTTGCGGGAAGCACACAAA
ATAATAAATCTTGAGGAGTATTTTCAGCGACTGCAAGCGTCGCTCAAGGA
AGCAGAGAATAAGGTGAGCAGCACGCTTCACTTGTTGAGGATGGACGGGG
AGGCACGGGAGGTGGAGGAATCGTTCAAGGCTTTATGCAACAGCATGAAA
GAGGCAGGTGAAGATGCTTTAGCCAAGCGGGGAGAGAGCGGAGAGGTTTC
TATGGATGACGCTGTTAAGATGGATAGTGGGCTTGATGCGATCTTGCCAC
GTTTCTTGCACCATGCGAGCCGGGCAACGACGTATAGGAAGGCCTTGGCA
GCTGCGTTGCTGTTGAATGAACGGCGGCAGTCAGAGAATATGCAACAGAA
GAACGAAAAAGAGCAGGTGGAGGAATTTTGCCTCGTTTGCCGTGAGCTGC
AGGGGCACGTTCGAAGCTTGCTTCCGGCGTGGGATTTGTATTCCAAGCTG
CGCCTGTGGCAAGTGCGTTTGAAGCGCTTGTGGCAGCATTCGGTCCATTG
GCTCGGCGGGGAGAGAAGGACAATGAAGAAACAGAAGAAGAGGAAGAGAG
ACGGGGATAGAGAAAGAGAAGGGGAGGGGCAGGAACCGGTGCCTGCTGTT
GTGAATGCTTTTGGAGCTGCCAAGCTGGCCTTACAAGCAGCAGTTGCTCT
TCTCCAGAAGATGAATGATGAAAGTGAGGACGACAAGGACAATGATGATG
AAGAAAACGTTGTAGCGATGGCCGTATTTACTCTACAGAAAGCGGTAGGA
GACGCCGAGGTAGCGATTTCCAAATATAAAGAGAAGGAAAGAATGCGAAG
GGAGGTCCGTAGGCGTCTAGAAGAGGAAAAAGCGCTCGAGGAACGCAATC
GCGACCAAGTGATGCGAGCCAAGGCGCGGGAAGAAATTTTGGGTAAACGT
CAGCTTGAGCGGTTGGAGCGGCGAAGGGTGCATTTGGAAGCGAGTCTGAA
GAGGGAAGAGGCTCGAGACCGGCTGAAGGAAATAAGGGCGGCGGGCTTCC
TGCCTTTCCTGGAGGCGGAGGCCGAGGTGAAAGGAAAGGAAGATGAGGGC
ATTTCTTTGAGCGTGATGGGAGTGGAGGGTTCCAAGGCTGTGGTTATCGC
GCCGTCGCCGATCGAAGAGAGAGAGAGATGGGGCATGGTTCCGATGCAGG
CAGAGCCTTCGCTCAATCTCACGTTGACTCACTTCCTGCCAAACATTGTT
TCCGCCGACTATTGGGTGAGGGAGAAGCAACGAGAAGCCGATGGAGTGGA
AAGCGTGAGAGCTGGATATCTGCGAAGCGAGGTCGTTGCCATCGGAGCAG
ATGGAGTGGTAGTATCTACGGCAGCAAAAACAGCAACAGGGAAGGGACGT
CAGAGCGACCATCTAAAAGTAAATAGCACTCGCTCTAGCCCACACGAGTC
TCGCAGAAAGCGAGGCCACACAAGGAGTATAGGAAATGACTGTTTTTTAG
ATAAGCCGCGTAGTGTCGTCATGATGGCCAGTTCTTGA

Synonyms

Publications