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Properties
| Property Name | Value |
|---|
| TranscriptId | 584616 |
| Track | FilteredModels2 |
| ProteinId | 584530 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_7 | supercontig | scaffold_7:633574..634851 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3090 ID=mRNA_3090|Name=jgi.p|Nanoce1779_2|584530|organism=Nannochloropsis oceanica|type=mRNA|length=932bp
ACAGGCAAAATAGCTATGTTTGATCAACACCAAGATGAAAATCAGCCAGA
GCGTCCGGGGCAGCAAAACCAGCACCAGCACCAGCAGCAGAATCACCACC
AGCCTCCTCCCGTTGGAGAGACAGGACCTTGGGTTTGGTACATGGAAATG
CCCGTCGTCTCACGGGTCTACTTAACAGCTTCAGTCCTGACCACGGCGGC
CTGCGCCCTGGACCTTGTCTCACCCTTCAACCTCTATTTCAACCTGAGCC
TGGTCCGTCAAGGCCAAGTCTGGCGTTTATTCACAAATTTCATGTACTTC
GGCAATTTCTCGTTAGACTTCCTCTTCCATATGTACTTCCTTGTCCGCTA
CTGCCGCCTGCTAGAAGAAGGCACCTTCCGCGGACGTACGGCTGATTTCA
TCTTCATGATTTTGTTCGGGGCCACGATGATTACGTGCATCGCGCCCTTC
ATCCGTCCCTCTATCCCCTTCCTCGGCTCCTCCCTCACCTTCATGATGGT
CTACGTCTGGGGGCGACAAAACGAACACGTCCGGCTGACCTTCCTGAATC
TTTTCCCGTTCACCGCACCTTATCTCCCTTGGGTCCTCTTGACGTTTTCC
ATGGTCTTGGGTAACCCTGCCACTATTGACGTCATCGGCATCATCGTCGG
TCACACCTATTACTTCCTCGAATTTGTATTCCCCGTCGTCGCTGAAGCCC
GAGGGTGGCCTGTCCGCCGTTTGTTCCATACCCCCGCAATGCTGCATTAC
TTCTGCGGCACATATCACCACGAGGAAGCTCCTGGGGCCGTGCGCGTTGA
TTTTGCCCCAGCGCATGCCAACGCCGCCGCGCCACCACCACCACCGGCAG
CAGCAGGAGCAGGAGCAGGAGCTGGAGGAGGAGGAGCAGGAGGAGGGCAG
CATCTGCATGAAGACTAAGAAAATCAGAAAAA back to topprotein sequence of jgi.p|Nanoce1779_2|584530 >mRNA_3090-protein ID=mRNA_3090-protein|Name=jgi.p|Nanoce1779_2|584530|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MFDQHQDENQPERPGQQNQHQHQQQNHHQPPPVGETGPWVWYMEMPVVSR
VYLTASVLTTAACALDLVSPFNLYFNLSLVRQGQVWRLFTNFMYFGNFSL
DFLFHMYFLVRYCRLLEEGTFRGRTADFIFMILFGATMITCIAPFIRPSI
PFLGSSLTFMMVYVWGRQNEHVRLTFLNLFPFTAPYLPWVLLTFSMVLGN
PATIDVIGIIVGHTYYFLEFVFPVVAEARGWPVRRLFHTPAMLHYFCGTY
HHEEAPGAVRVDFAPAHANAAAPPPPPAAAGAGAGAGGGGAGGGQHLHED
* back to topmRNA from alignment at scaffold_7:633574..634851- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3090 ID=mRNA_3090|Name=jgi.p|Nanoce1779_2|584530|organism=Nannochloropsis oceanica|type=mRNA|length=1278bp|location=Sequence derived from alignment at scaffold_7:633574..634851- (Nannochloropsis oceanica)
ACAGGCAAAATAGCTATGTTTGATCAACACCAAGATGAAAATCAGCCAGA
GCGTCCGGGGCAGCAAAACCAGCACCAGCACCAGCAGCAGAATCACCACC
AGCCTCCTCCCGTTGGAGAGACAGGACCTTGGGTACGTGAAAAGAGATAC
ATACCTTTCTATCTGAAGGGTGGAATGGGATGGGATGGACAAAAGTGCAG
TGTAAATGACATGTCGATGCATGCTAGCGCATTAATAGGAACTTTTCTCC
GGTACAAGAGAAGCGGGAGGAAGCAAGAAGAGAGACCCACGTGCACGTGT
GTGCATTTGCTCTGGCACTTCTTAGAGCTTTTAAAACCAATTGTAATCAC
GCGCACTCCAGCCCTTACTCCTTACACTCAGGAGTTCCGTATATGAGGCA
TCCAACTCACTGATTTCTCCCGTCCCTCTTGCTCTTCGCCTCTACTCCCC
CTTCCTCCCTCCCAATCTCCATCCCCAGGTTTGGTACATGGAAATGCCCG
TCGTCTCACGGGTCTACTTAACAGCTTCAGTCCTGACCACGGCGGCCTGC
GCCCTGGACCTTGTCTCACCCTTCAACCTCTATTTCAACCTGAGCCTGGT
CCGTCAAGGCCAAGTCTGGCGTTTATTCACAAATTTCATGTACTTCGGCA
ATTTCTCGTTAGACTTCCTCTTCCATATGTACTTCCTTGTCCGCTACTGC
CGCCTGCTAGAAGAAGGCACCTTCCGCGGACGTACGGCTGATTTCATCTT
CATGATTTTGTTCGGGGCCACGATGATTACGTGCATCGCGCCCTTCATCC
GTCCCTCTATCCCCTTCCTCGGCTCCTCCCTCACCTTCATGATGGTCTAC
GTCTGGGGGCGACAAAACGAACACGTCCGGCTGACCTTCCTGAATCTTTT
CCCGTTCACCGCACCTTATCTCCCTTGGGTCCTCTTGACGTTTTCCATGG
TCTTGGGTAACCCTGCCACTATTGACGTCATCGGCATCATCGTCGGTCAC
ACCTATTACTTCCTCGAATTTGTATTCCCCGTCGTCGCTGAAGCCCGAGG
GTGGCCTGTCCGCCGTTTGTTCCATACCCCCGCAATGCTGCATTACTTCT
GCGGCACATATCACCACGAGGAAGCTCCTGGGGCCGTGCGCGTTGATTTT
GCCCCAGCGCATGCCAACGCCGCCGCGCCACCACCACCACCGGCAGCAGC
AGGAGCAGGAGCAGGAGCTGGAGGAGGAGGAGCAGGAGGAGGGCAGCATC
TGCATGAAGACTAAGAAAATCAGAAAAA back to topCoding sequence (CDS) from alignment at scaffold_7:633574..634851- >mRNA_3090 ID=mRNA_3090|Name=jgi.p|Nanoce1779_2|584530|organism=Nannochloropsis oceanica|type=CDS|length=1806bp|location=Sequence derived from alignment at scaffold_7:633574..634851- (Nannochloropsis oceanica)
GTTTGGTACATGGAAATGCCCGTCGTCTCACGGGTCTACTTAACAGCTTC
AGTCCTGACCACGGCGGCCTGCGCCCTGGACCTTGTCTCACCCTTCAACC
TCTATTTCAACCTGAGCCTGGTCCGTCAAGGCCAAGTCTGGCGTTTATTC
ACAAATTTCATGTACTTCGGCAATTTCTCGTTAGACTTCCTCTTCCATAT
GTACTTCCTTGTCCGCTACTGCCGCCTGCTAGAAGAAGGCACCTTCCGCG
GACGTACGGCTGATTTCATCTTCATGATTTTGTTCGGGGCCACGATGATT
ACGTGCATCGCGCCCTTCATCCGTCCCTCTATCCCCTTCCTCGGCTCCTC
CCTCACCTTCATGATGGTCTACGTCTGGGGGCGACAAAACGAACACGTCC
GGCTGACCTTCCTGAATCTTTTCCCGTTCACCGCACCTTATCTCCCTTGG
GTCCTCTTGACGTTTTCCATGGTCTTGGGTAACCCTGCCACTATTGACGT
CATCGGCATCATCGTCGGTCACACCTATTACTTCCTCGAATTTGTATTCC
CCGTCGTCGCTGAAGCCCGAGGGTGGCCTGTCCGCCGTTTGTTCCATACC
CCCGCAATGCTGCATTACTTCTGCGGCACATATCACCACGAGGAAGCTCC
TGGGGCCGTGCGCGTTGATTTTGCCCCAGCGCATGCCAACGCCGCCGCGC
CACCACCACCACCGGCAGCAGCAGGAGCAGGAGCAGGAGCTGGAGGAGGA
GGAGCAGGAGGAGGGCAGCATCTGCATGAAGACTAAATGTTTGATCAACA
CCAAGATGAAAATCAGCCAGAGCGTCCGGGGCAGCAAAACCAGCACCAGC
ACCAGCAGCAGAATCACCACCAGCCTCCTCCCGTTGGAGAGACAGGACCT
TGGGTTTGGTACATGGAAATGCCCGTCGTCTCACGGGTCTACTTAACAGC
TTCAGTCCTGACCACGGCGGCCTGCGCCCTGGACCTTGTCTCACCCTTCA
ACCTCTATTTCAACCTGAGCCTGGTCCGTCAAGGCCAAGTCTGGCGTTTA
TTCACAAATTTCATGTACTTCGGCAATTTCTCGTTAGACTTCCTCTTCCA
TATGTACTTCCTTGTCCGCTACTGCCGCCTGCTAGAAGAAGGCACCTTCC
GCGGACGTACGGCTGATTTCATCTTCATGATTTTGTTCGGGGCCACGATG
ATTACGTGCATCGCGCCCTTCATCCGTCCCTCTATCCCCTTCCTCGGCTC
CTCCCTCACCTTCATGATGGTCTACGTCTGGGGGCGACAAAACGAACACG
TCCGGCTGACCTTCCTGAATCTTTTCCCGTTCACCGCACCTTATCTCCCT
TGGGTCCTCTTGACGTTTTCCATGGTCTTGGGTAACCCTGCCACTATTGA
CGTCATCGGCATCATCGTCGGTCACACCTATTACTTCCTCGAATTTGTAT
TCCCCGTCGTCGCTGAAGCCCGAGGGTGGCCTGTCCGCCGTTTGTTCCAT
ACCCCCGCAATGCTGCATTACTTCTGCGGCACATATCACCACGAGGAAGC
TCCTGGGGCCGTGCGCGTTGATTTTGCCCCAGCGCATGCCAACGCCGCCG
CGCCACCACCACCACCGGCAGCAGCAGGAGCAGGAGCAGGAGCTGGAGGA
GGAGGAGCAGGAGGAGGGCAGCATCTGCATGAAGACTAAATGTTTGATCA
ACACCAAGATGAAAATCAGCCAGAGCGTCCGGGGCAGCAAAACCAGCACC
AGCACCAGCAGCAGAATCACCACCAGCCTCCTCCCGTTGGAGAGACAGGA
CCTTGG back to top
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