jgi.p|Nanoce1779_2|584513, mRNA_3087 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584513
Unique NamemRNA_3087
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2111
Alignment locationscaffold_7:627163..629339 +

Link to JBrowse

Properties
Property NameValue
TranscriptId584599
TrackFilteredModels2
ProteinId584513
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:627163..629339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584513gene_3087Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584513mRNA_3087-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3087CDS_3087Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3087 ID=mRNA_3087|Name=jgi.p|Nanoce1779_2|584513|organism=Nannochloropsis oceanica|type=mRNA|length=2111bp
AGACTCAGGACAGACGTGTGGTGACCAGCCAGGTCGAAGCGGCCGGGAGT
GATCCGCAAGCCAAGAGGACGCCGCACCGACCATAGAGCAGCCTGGCAAC
GAACCTTTGCAATTCGCTCCATGATCGTGGCTCCGACCATGGTGGCAGCT
ACGTCATGGGAGGGCACGCCGCCATCCACCAATACTGCCCCAGCAGCGAC
ATCCGCAGCGGAGGCATCGGCTGAGGTAGTAGAAGAGGACGGCTCGCCGT
CAGTTTGTGTCGACCAACAAAGAGCCCCCCACCCTTCCATATCCCTTCGA
GATATACCGCTTCATGACGCCTGCAGGAGTCTCACCCAGAGCAGCAGTAG
TAGTACCGGCACTAGCACGGCAATATTGCCACATGAAGAGGCGACGCGAA
GAAGACGGAGGAGGTCGGGATCAGGCGAGAGGAGCAAAGATGGCACGTCC
TTCGACGAGTCGACACAAAATGCACCCATGTCCTGGGAGAGACAAGGTTC
TTCGATCCACCCGGTGCATATGGGGGGGTCAGCTGGCAACGGGGATAGCA
GCGACACGCTGGGGGTTGACTCGGACGATGAAAAGCTGGATGAAGAAGGG
GAGATGGTGGTGGCTGTGGCGGCTGCAGCAGCAGCAGCCGCTGCAGCGGG
CGGCACGACGAAGCCTGGCGTGGAAGGCTTAAGCATCAAGCTGGGGGGGG
GGCTAGAAGGACTTGGATCGAGCCCCTCACCGATGGTGTATGGATACTGC
AATAGCAAGTCGCCTGTTTCCCGAGTGACATCGCCGATAGCGGCCTTGTC
CACTTTCACTGAGATGGAGACCCCCTGTCCGCTGCGGGGCGCTGTGGCAG
GTCGAAGTCCCGTCGGGAACCGCTTAGTGATGCCGAGCATCCTGCCACAC
CCCGAAGCACTCCCTTTCATTCGTGAACGAAGCCAGCAGTTGTACGTGCC
TTTGCCGGTGGCTATCAGTAGGACATTTGGGGAAGAGAATAATTCAATGA
TTGATCGGCGGGCTTGGTTAGAGGTTGAGGATCGCAAGCACAGGTATGCC
AAGAATTTGCGATTGTACTATAAGGAGTGGGACCGTCGAGGGCAGCCAGG
GAAGTCGTTCTGGAGCTGGCTGGACGAGGGCGACATTGAGGTGAGTTGGT
TGAGTGGGAAGAAAAGGGAAATGGTAGGAACTCCTTGTCTTACCATGTAT
TTTAAATTTCCTACTCTTATTCTTAACTCGTTATAGCTTGAGGACTGCTC
CAGGGCGCAGCTGGAAGCCGAGACGGTTTATTACTGCTCGTCGGATAAGG
ACCGGAAACAATACGAGGTCCGCTTCATGGAGAAAGGCTTGCTGCACCGG
TTCAACGCCGAGACAGGCGAGTGGGGCCTTGTCGACACGGGCCCGGACGG
ATGGATTTTTGTATTGCGGGACGGCATCATCTACGCACATGAAAAGAAGA
CTGACCATCCACCGAGGTTTCACCATTCAAGTTTTTTTGCCGGCGAATGC
GTGCAGGCTGCGGGGCTTTTTGTAGCGGGGGAAGGCGTGCTCGAGAGGCT
CTATCCGCACTCGGGCCACTACCGGCCCACTGACAGCCATCTCCTCTCCC
TCCTTCTCTTCCTTGAGTCTCAAGGCGTGGACATGGAGCGCATGCAGGTC
GACTTCCAGCTCGTCATGAAGGTGGCTCGTTCCCATGATGCTCACAAGGG
CGGGCGGCGACGCAAGATCGATAGCCCTTACATGTGGACGGGACTGCATG
CCAAGTACTTTTTACTGGTCAAGAGATATACCTGGGAGAATAAACTCTTC
GACGAAATGCTCAAGCACCGCCTCTGTCTATGCTCACCGGGCTCTTAGAT
AAGATCAAATTCGTATTTTTGCGATGTATTTATCAAATCCGCACAAATCT
TTCAGTCAAGTCTGTCGCTGAGTAGACAGAGTCCTCTCTACCCCATTGGC
GGGGAGTTACTCTCATTTTTGCTGCGGAAACGACAAAGAAAAAATGAACG
CTTTTCGTAAAAATTTCTGCCTGATTGTATCTCATGTCCGTGTTGCATTT
GTGTGCGCTTGTTGTCGTCACGCGGGGCGGTTAAAGACAGACGCATCGTC
AAAAAAGGGGG
back to top

protein sequence of jgi.p|Nanoce1779_2|584513

>mRNA_3087-protein ID=mRNA_3087-protein|Name=jgi.p|Nanoce1779_2|584513|organism=Nannochloropsis oceanica|type=polypeptide|length=372bp
MIVAPTMVAATSWEGTPPSTNTAPAATSAAEASAEVVEEDGSPSVCVDQQ
RAPHPSISLRDIPLHDACRSLTQSSSSSTGTSTAILPHEEATRRRRRRSG
SGERSKDGTSFDESTQNAPMSWERQGSSIHPVHMGGSAGNGDSSDTLGVD
SDDEKLDEEGEMVVAVAAAAAAAAAAGGTTKPGVEGLSIKLGGGLEGLGS
SPSPMVYGYCNSKSPVSRVTSPIAALSTFTEMETPCPLRGAVAGRSPVGN
RLVMPSILPHPEALPFIRERSQQLYVPLPVAISRTFGEENNSMIDRRAWL
EVEDRKHRYAKNLRLYYKEWDRRGQPGKSFWSWLDEGDIEVSWLSGKKRE
MVGTPCLTMYFKFPTLILNSL*
back to top

mRNA from alignment at scaffold_7:627163..629339+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3087 ID=mRNA_3087|Name=jgi.p|Nanoce1779_2|584513|organism=Nannochloropsis oceanica|type=mRNA|length=2177bp|location=Sequence derived from alignment at scaffold_7:627163..629339+ (Nannochloropsis oceanica)
AGACTCAGGACAGACGTGTGGTGACCAGCCAGGTCGAAGCGGCCGGGAGT
GATCCGCAAGCCAAGAGGACGCCGCACCGACCATAGAGCAGCCTGGCAAC
GAACCTTTGCAATTCGCTCCATGATCGTGGCTCCGACCATGGTGGCAGCT
ACGTCATGGGAGGGCACGCCGCCATCCACCAATACTGCCCCAGCAGCGAC
ATCCGCAGCGGAGGCATCGGCTGAGGTAGTAGAAGAGGACGGCTCGCCGT
CAGTTTGTGTCGACCAACAAAGAGCCCCCCACCCTTCCATATCCCTTCGA
GATATACCGCTTCATGACGCCTGCAGGAGTCTCACCCAGAGCAGCAGTAG
TAGTACCGGCACTAGCACGGCAATATTGCCACATGAAGAGGCGACGCGAA
GAAGACGGAGGAGGTCGGGATCAGGCGAGAGGAGCAAAGATGGCACGTCC
TTCGACGAGTCGACACAAAATGCACCCATGTCCTGGGAGAGACAAGGTTC
TTCGATCCACCCGGTGCATATGGGGGGGTCAGCTGGCAACGGGGATAGCA
GCGACACGCTGGGGGTTGACTCGGACGATGAAAAGCTGGATGAAGAAGGG
GAGATGGTGGTGGCTGTGGCGGCTGCAGCAGCAGCAGCCGCTGCAGCGGG
CGGCACGACGAAGCCTGGCGTGGAAGGCTTAAGCATCAAGCTGGGGGGGG
GGCTAGAAGGACTTGGATCGAGCCCCTCACCGATGGTGTATGGATACTGC
AATAGCAAGTCGCCTGTTTCCCGAGTGACATCGCCGATAGCGGCCTTGTC
CACTTTCACTGAGATGGAGACCCCCTGTCCGCTGCGGGGCGCTGTGGCAG
GTCGAAGTCCCGTCGGGAACCGCTTAGTGATGCCGAGCATCCTGCCACAC
CCCGAAGCACTCCCTTTCATTCGTGAACGAAGCCAGCAGTTGTACGTGCC
TTTGCCGGTGGCTATCAGTAGGACATTTGGGGAAGAGAATAATTCAATGA
TTGATCGGCGGGCTTGGTTAGAGGTTGAGGATCGCAAGCACAGGTATGCC
AAGAATTTGCGATTGTACTATAAGGAGTGGGACCGTCGAGGGCAGCCAGG
GAAGTCGTTCTGGAGCTGGCTGGACGAGGGCGACATTGAGGTGAGTTGGT
TGAGTGGGAAGAAAAGGGAAATGGTAGGAACTCCTTGTCTTACCATGTAT
TTTAAATTTCCTACTCTTATTCTTAACTCGTTATAGCTTGAGGACTGCTC
CAGGGCGCAGCTGGAAGCCGAGACGGTTTATTACTGCTCGTCGGATAAGG
ACCGGAAACAATACGAGGTCCGCTTCATGGAGAAAGGCTTGCTGCACCGG
TTCAACGCCGAGACAGGCGAGTGGGGCCTTGTCGACACGGGCCCGGACGG
ATGGATTTTTGTATTGCGGGACGGCATCATCTACGCACATGAAAAGAAGA
CTGACCATCCACCGAGGTAATGAAAAAAAGAACGCTTATGAAGGCAAAGA
AGGTATTTTCACCATAACCTCTCAACCCACAGGTTTCACCATTCAAGTTT
TTTTGCCGGCGAATGCGTGCAGGCTGCGGGGCTTTTTGTAGCGGGGGAAG
GCGTGCTCGAGAGGCTCTATCCGCACTCGGGCCACTACCGGCCCACTGAC
AGCCATCTCCTCTCCCTCCTTCTCTTCCTTGAGTCTCAAGGCGTGGACAT
GGAGCGCATGCAGGTCGACTTCCAGCTCGTCATGAAGGTGGCTCGTTCCC
ATGATGCTCACAAGGGCGGGCGGCGACGCAAGATCGATAGCCCTTACATG
TGGACGGGACTGCATGCCAAGTACTTTTTACTGGTCAAGAGATATACCTG
GGAGAATAAACTCTTCGACGAAATGCTCAAGCACCGCCTCTGTCTATGCT
CACCGGGCTCTTAGATAAGATCAAATTCGTATTTTTGCGATGTATTTATC
AAATCCGCACAAATCTTTCAGTCAAGTCTGTCGCTGAGTAGACAGAGTCC
TCTCTACCCCATTGGCGGGGAGTTACTCTCATTTTTGCTGCGGAAACGAC
AAAGAAAAAATGAACGCTTTTCGTAAAAATTTCTGCCTGATTGTATCTCA
TGTCCGTGTTGCATTTGTGTGCGCTTGTTGTCGTCACGCGGGGCGGTTAA
AGACAGACGCATCGTCAAAAAAGGGGG
back to top

Coding sequence (CDS) from alignment at scaffold_7:627163..629339+

>mRNA_3087 ID=mRNA_3087|Name=jgi.p|Nanoce1779_2|584513|organism=Nannochloropsis oceanica|type=CDS|length=1116bp|location=Sequence derived from alignment at scaffold_7:627163..629339+ (Nannochloropsis oceanica)
ATGATCGTGGCTCCGACCATGGTGGCAGCTACGTCATGGGAGGGCACGCC
GCCATCCACCAATACTGCCCCAGCAGCGACATCCGCAGCGGAGGCATCGG
CTGAGGTAGTAGAAGAGGACGGCTCGCCGTCAGTTTGTGTCGACCAACAA
AGAGCCCCCCACCCTTCCATATCCCTTCGAGATATACCGCTTCATGACGC
CTGCAGGAGTCTCACCCAGAGCAGCAGTAGTAGTACCGGCACTAGCACGG
CAATATTGCCACATGAAGAGGCGACGCGAAGAAGACGGAGGAGGTCGGGA
TCAGGCGAGAGGAGCAAAGATGGCACGTCCTTCGACGAGTCGACACAAAA
TGCACCCATGTCCTGGGAGAGACAAGGTTCTTCGATCCACCCGGTGCATA
TGGGGGGGTCAGCTGGCAACGGGGATAGCAGCGACACGCTGGGGGTTGAC
TCGGACGATGAAAAGCTGGATGAAGAAGGGGAGATGGTGGTGGCTGTGGC
GGCTGCAGCAGCAGCAGCCGCTGCAGCGGGCGGCACGACGAAGCCTGGCG
TGGAAGGCTTAAGCATCAAGCTGGGGGGGGGGCTAGAAGGACTTGGATCG
AGCCCCTCACCGATGGTGTATGGATACTGCAATAGCAAGTCGCCTGTTTC
CCGAGTGACATCGCCGATAGCGGCCTTGTCCACTTTCACTGAGATGGAGA
CCCCCTGTCCGCTGCGGGGCGCTGTGGCAGGTCGAAGTCCCGTCGGGAAC
CGCTTAGTGATGCCGAGCATCCTGCCACACCCCGAAGCACTCCCTTTCAT
TCGTGAACGAAGCCAGCAGTTGTACGTGCCTTTGCCGGTGGCTATCAGTA
GGACATTTGGGGAAGAGAATAATTCAATGATTGATCGGCGGGCTTGGTTA
GAGGTTGAGGATCGCAAGCACAGGTATGCCAAGAATTTGCGATTGTACTA
TAAGGAGTGGGACCGTCGAGGGCAGCCAGGGAAGTCGTTCTGGAGCTGGC
TGGACGAGGGCGACATTGAGGTGAGTTGGTTGAGTGGGAAGAAAAGGGAA
ATGGTAGGAACTCCTTGTCTTACCATGTATTTTAAATTTCCTACTCTTAT
TCTTAACTCGTTATAG
back to top
Synonyms
Publications