jgi.p|Nanoce1779_2|584511, mRNA_3086 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584511
Unique NamemRNA_3086
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1989
Alignment locationscaffold_7:625063..627051 -

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Properties
Property NameValue
TranscriptId584597
TrackFilteredModels2
ProteinId584511
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:625063..627051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584511gene_3086Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584511mRNA_3086-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3086CDS_3086Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3086 ID=mRNA_3086|Name=jgi.p|Nanoce1779_2|584511|organism=Nannochloropsis oceanica|type=mRNA|length=1989bp
CTCATCATCGGTCATCGGAGAGGCCCACTTATTTTTTTTTCCTTTCCACG
ACCAACATTTCTTCCCTATCGATATCGAACATGAGAATCAGCCGAAGCGG
CAGTGCTTCATCCCCAATGTCATGACCCTGTAGTTTGTTAGCCCTGCTGT
TTAAGGATGAGGACAAGCAAGAAAAAAACAAGCACACTTTTAAGCCAGGT
GTAGAGCACGGTACAGGTGCGACAAAACTCTTCCAGACCTCGATATGAGA
AGTTCCATGAGCGCTTGAAGGTTGAAACAGAGCTAGAGGCGGGCGTGCAC
TTGTTGTGATGAGTCCAGAGGGCCTGTCCTGGTCTCTAGCCTACAACTAG
AGCTTGTTTGCCTTGATGCATGTGCAGGTGAAGCCTGTATTACTGTACAT
TCCTCCCATTGCTTTTGCCATGATGCGGGTCTCGTTGGCCTTGCCCTTCC
TCTTCTTTGTCGCGTGGAAGGAAGGCTCCTTACCCAAGATTGACCGACGG
AATGCCCGCTACATGCTTTTACTAGGATTGCTAGGGGTTGCCTTGCCCCA
GACTCTCGTGTTTGAGGCCGACAAACTCGCAGGGCCCAACGCTGTTGCCA
TCATGACTCCAGTTGGTCCCTATCTCCCACCCTTCCTCCCTCTCTCCCTC
GCATCTTCGATCCCTTTGATCGTGTCGAACGTATCGAGTCTGTCATTCTA
ACGTTTATGTTTCTTCGTGTTTACCCTTGCTTCACTTCCTCTCAAGGCTG
CCCCAGTCAATGCCGCCATCTTCGCCTCGGCCCTTAAACTAGAACGACTC
ACCCGCGTCAAGGTGGGGGGAGTTTCCCTGGCCGTGGCAGGTGCCTTGGT
CATTCTCTGGCCGGACAAAATAGCCTTGACCAATGGGCGTCCTGACGAAA
TACCCGCGGGGATTTGCGTGATTGTGATACAGACCATGTGGTATGCCGCG
CTTTTGGTCGCATTAAAAATCAAGCTGCAAACACATCCAAACCCTTTCGG
TCTATATGCTTATGCTTCTTTGACGGGCGCAATCGTTATCGCATTCGCGG
GTGTTGTGAGTGGAAGTATCTATTTTGATCCAAACATTGTGCCCCGGAGT
GCGTGGTTCGCTGTCCTCAATTGCGGCTTCGCCATTTCCTTCTTTGCGCA
TGCCTGTCAGTCCTGGTACGTTCTTTCTTGAACGAATGGATGAAGGATTC
GAAATTAAGGGATATGATGGTGCAGGATGTAAACGACGAATTGAAATTCG
CCACTCACACAGTAAATGCGATACACATCTTCCAGTTTTACTCTCTCATC
CTCTTTCTTAGTGCAGTGCTTTCGGCTGCCTTACATCAACCCCTAACGCT
TCTCAACTGAACCCACAGGGCGGTCGCGCACACCTCAGCATCTTTCCCCT
CTCTCTTCAATTGCCTGTCCCCCTCTTTCACCGGCTTTCTCGCCCATGTT
TTTCTTGAGGAAAGGTTGGGCTTGCCGAGCGACATCATGGGTCTACCATT
AAACGTGTCAGGTCTCTTTGCCGTCGTTTTTTCCAAGATGAGGCTAGAGG
GGCCCATGTCAGCAATCGCAACTGCCTCAGACAAGGATACAGTCAATGAG
ATTGGGATGGATGCAGTCCTTCCCGATACAGTAGCACCACCAGCTGGTAG
ACTGAGCCTTAGTCGGTCTGGGACGCTCAGACAGTCTCTGAAGAACCTTC
CTCACGACCCGCCACACCGGCAGCAAATAAGAGACATTATGTGTGTTACA
AAGGGGGTTGTAAAGAAATGGAGAGCGACACTCGGGGGGAGAAAACTATG
CGTGCATATACAGACTTGCAGTGAGAGAGGGGCAATTTTGACAAAGGAAT
GGAAGGTACCACTTCGTCATTGCCAAATAAAGCCACGCATACATATGCTG
ACAAAGAAGGAATAATAATATGATTATAATTATTATAAATCCTCACTAGA
AGGAGAAAGGCCCCTCTGCGAGGAAATGGTGGAAATCGG
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protein sequence of jgi.p|Nanoce1779_2|584511

>mRNA_3086-protein ID=mRNA_3086-protein|Name=jgi.p|Nanoce1779_2|584511|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MHVQVKPVLLYIPPIAFAMMRVSLALPFLFFVAWKEGSLPKIDRRNARYM
LLLGLLGVALPQTLVFEADKLAGPNAVAIMTPVGPYLPPFLPLSLASSIP
LIVSNVSSLSF*
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mRNA from alignment at scaffold_7:625063..627051-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3086 ID=mRNA_3086|Name=jgi.p|Nanoce1779_2|584511|organism=Nannochloropsis oceanica|type=mRNA|length=1989bp|location=Sequence derived from alignment at scaffold_7:625063..627051- (Nannochloropsis oceanica)
CTCATCATCGGTCATCGGAGAGGCCCACTTATTTTTTTTTCCTTTCCACG
ACCAACATTTCTTCCCTATCGATATCGAACATGAGAATCAGCCGAAGCGG
CAGTGCTTCATCCCCAATGTCATGACCCTGTAGTTTGTTAGCCCTGCTGT
TTAAGGATGAGGACAAGCAAGAAAAAAACAAGCACACTTTTAAGCCAGGT
GTAGAGCACGGTACAGGTGCGACAAAACTCTTCCAGACCTCGATATGAGA
AGTTCCATGAGCGCTTGAAGGTTGAAACAGAGCTAGAGGCGGGCGTGCAC
TTGTTGTGATGAGTCCAGAGGGCCTGTCCTGGTCTCTAGCCTACAACTAG
AGCTTGTTTGCCTTGATGCATGTGCAGGTGAAGCCTGTATTACTGTACAT
TCCTCCCATTGCTTTTGCCATGATGCGGGTCTCGTTGGCCTTGCCCTTCC
TCTTCTTTGTCGCGTGGAAGGAAGGCTCCTTACCCAAGATTGACCGACGG
AATGCCCGCTACATGCTTTTACTAGGATTGCTAGGGGTTGCCTTGCCCCA
GACTCTCGTGTTTGAGGCCGACAAACTCGCAGGGCCCAACGCTGTTGCCA
TCATGACTCCAGTTGGTCCCTATCTCCCACCCTTCCTCCCTCTCTCCCTC
GCATCTTCGATCCCTTTGATCGTGTCGAACGTATCGAGTCTGTCATTCTA
ACGTTTATGTTTCTTCGTGTTTACCCTTGCTTCACTTCCTCTCAAGGCTG
CCCCAGTCAATGCCGCCATCTTCGCCTCGGCCCTTAAACTAGAACGACTC
ACCCGCGTCAAGGTGGGGGGAGTTTCCCTGGCCGTGGCAGGTGCCTTGGT
CATTCTCTGGCCGGACAAAATAGCCTTGACCAATGGGCGTCCTGACGAAA
TACCCGCGGGGATTTGCGTGATTGTGATACAGACCATGTGGTATGCCGCG
CTTTTGGTCGCATTAAAAATCAAGCTGCAAACACATCCAAACCCTTTCGG
TCTATATGCTTATGCTTCTTTGACGGGCGCAATCGTTATCGCATTCGCGG
GTGTTGTGAGTGGAAGTATCTATTTTGATCCAAACATTGTGCCCCGGAGT
GCGTGGTTCGCTGTCCTCAATTGCGGCTTCGCCATTTCCTTCTTTGCGCA
TGCCTGTCAGTCCTGGTACGTTCTTTCTTGAACGAATGGATGAAGGATTC
GAAATTAAGGGATATGATGGTGCAGGATGTAAACGACGAATTGAAATTCG
CCACTCACACAGTAAATGCGATACACATCTTCCAGTTTTACTCTCTCATC
CTCTTTCTTAGTGCAGTGCTTTCGGCTGCCTTACATCAACCCCTAACGCT
TCTCAACTGAACCCACAGGGCGGTCGCGCACACCTCAGCATCTTTCCCCT
CTCTCTTCAATTGCCTGTCCCCCTCTTTCACCGGCTTTCTCGCCCATGTT
TTTCTTGAGGAAAGGTTGGGCTTGCCGAGCGACATCATGGGTCTACCATT
AAACGTGTCAGGTCTCTTTGCCGTCGTTTTTTCCAAGATGAGGCTAGAGG
GGCCCATGTCAGCAATCGCAACTGCCTCAGACAAGGATACAGTCAATGAG
ATTGGGATGGATGCAGTCCTTCCCGATACAGTAGCACCACCAGCTGGTAG
ACTGAGCCTTAGTCGGTCTGGGACGCTCAGACAGTCTCTGAAGAACCTTC
CTCACGACCCGCCACACCGGCAGCAAATAAGAGACATTATGTGTGTTACA
AAGGGGGTTGTAAAGAAATGGAGAGCGACACTCGGGGGGAGAAAACTATG
CGTGCATATACAGACTTGCAGTGAGAGAGGGGCAATTTTGACAAAGGAAT
GGAAGGTACCACTTCGTCATTGCCAAATAAAGCCACGCATACATATGCTG
ACAAAGAAGGAATAATAATATGATTATAATTATTATAAATCCTCACTAGA
AGGAGAAAGGCCCCTCTGCGAGGAAATGGTGGAAATCGG
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Coding sequence (CDS) from alignment at scaffold_7:625063..627051-

>mRNA_3086 ID=mRNA_3086|Name=jgi.p|Nanoce1779_2|584511|organism=Nannochloropsis oceanica|type=CDS|length=336bp|location=Sequence derived from alignment at scaffold_7:625063..627051- (Nannochloropsis oceanica)
ATGCATGTGCAGGTGAAGCCTGTATTACTGTACATTCCTCCCATTGCTTT
TGCCATGATGCGGGTCTCGTTGGCCTTGCCCTTCCTCTTCTTTGTCGCGT
GGAAGGAAGGCTCCTTACCCAAGATTGACCGACGGAATGCCCGCTACATG
CTTTTACTAGGATTGCTAGGGGTTGCCTTGCCCCAGACTCTCGTGTTTGA
GGCCGACAAACTCGCAGGGCCCAACGCTGTTGCCATCATGACTCCAGTTG
GTCCCTATCTCCCACCCTTCCTCCCTCTCTCCCTCGCATCTTCGATCCCT
TTGATCGTGTCGAACGTATCGAGTCTGTCATTCTAA
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Synonyms
Publications