jgi.p|Nanoce1779_2|396313, mRNA_3084 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|396313
Unique NamemRNA_3084
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1335
Alignment locationscaffold_7:623704..625038 -

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Properties
Property NameValue
TranscriptId396399
TrackFilteredModels2
ProteinId396313
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:623704..625038 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|396313gene_3084Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|396313mRNA_3084-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3084CDS_3084Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3084 ID=mRNA_3084|Name=jgi.p|Nanoce1779_2|396313|organism=Nannochloropsis oceanica|type=mRNA|length=1335bp
GCCAGCCAAGCTCAAGATAGTGCAATCTCTGATCTTTATCAATTTCAATC
TGACCCTGATCACTTGACCCTGATTACCTTGCCCACCACCAACACAGGAT
GGATGATCTGACTCTGGACCCCGCCGAGTACTTGGCAACCAAACGCCTCG
GGTCTTTGAAGTGGCTTGTCGAGCCTGCATCGTCATCAGTCCCTCCTCCG
AAGCCCGTTTCCCTCTCCCCTGACTTGCCCGTCCATCGATGCGTTTGCTG
CGAAACGCAGGCCGGCATTTTCGAACAGCACGTGGCTCAGTTCTTGACGT
CCAAGGAATTTGCAACTTTCTCAACCGTGATTCGGCGCCCGTTGGTTTTG
TCAAAAAGAGGGGAGGTTAGATGTCTGGACGGTCCGCTAGTCCCGCCCTT
TGGCTTGAACATCTGCGCGAACGACGGACCACGGACAGCAAAAGATTGTC
ACCACCATCCGCGCGTAGGGTACGTCCAGCAACCATTGCGGACGGAGGGT
GATGACCACGTGCTTTATTGGTTAGATGTTGGAAAACCTCAGCGCATTTT
AGAGGCTGGTGGTGCGAGAGGAGAGGGCGCTCAACGTGGCGACGGTGCGG
CCCGAAGGATCTCGGCTATCAAAAGTGGAAGCGAATGTTCGACACTTGCC
TCGTTAACGGCACCATCGAATGCACAGATCTCTAGCGTGAACAGCAATGG
CAGGACAACCTCTTCCAAGCAGCGTCCAAGCGGCGGGAAAGAGGACCGAG
AAGAAGCGGAGCGAATGCGAGCACAAGTCAGGTTGCCGCGCCTGGCAGCC
ACCCTCTTGGCAAGCCTTATGGGTGGCGGGGTCATGATGATTTTGGCGGT
ATGGCAACAACGTTTGAAGGGCGATCTGCCCCGCAATAATGGGATAATAC
TGCTGCTCGCTCTATATGCCCTTGTGGGGCTGGCGTGCTCCGGGGTGGGC
CTATGGATATGGCAGATGTATTCTGATCGCCAGCGCCTAATGGTTCCGAT
GCCCACTGCGAGCATGAATAGGAGGACAAGGGGCAAGGGGAGGGATCCGC
AGCATGTGGGCAGCGGCCATGACAGGCACGCACCAGACCGACCGAGAACG
CGCAATATCGAGGAAGCACAGTGCCTAATAGAAAGTGATGGCAACAATTA
CGGTAGCGGCCGGGGTGCACCGTGAATTGAAGTTAAAACGACAGCTTCAG
ATCATGACAGCGTATGTACATAACATTGGTAATGTGAAGTGGATGATGAG
GGAAATCGAAAGTAGAGGAAATCGTTTAACCATTTAGACATAATGTACCG
TTTCCAAATCGACATATTTTATTAATCATTTTATG
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protein sequence of jgi.p|Nanoce1779_2|396313

>mRNA_3084-protein ID=mRNA_3084-protein|Name=jgi.p|Nanoce1779_2|396313|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MDDLTLDPAEYLATKRLGSLKWLVEPASSSVPPPKPVSLSPDLPVHRCVC
CETQAGIFEQHVAQFLTSKEFATFSTVIRRPLVLSKRGEVRCLDGPLVPP
FGLNICANDGPRTAKDCHHHPRVGYVQQPLRTEGDDHVLYWLDVGKPQRI
LEAGGARGEGAQRGDGAARRISAIKSGSECSTLASLTAPSNAQISSVNSN
GRTTSSKQRPSGGKEDREEAERMRAQVRLPRLAATLLASLMGGGVMMILA
VWQQRLKGDLPRNNGIILLLALYALVGLACSGVGLWIWQMYSDRQRLMVP
MPTASMNRRTRGKGRDPQHVGSGHDRHAPDRPRTRNIEEAQCLIESDGNN
YGSGRGAP*
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mRNA from alignment at scaffold_7:623704..625038-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3084 ID=mRNA_3084|Name=jgi.p|Nanoce1779_2|396313|organism=Nannochloropsis oceanica|type=mRNA|length=1335bp|location=Sequence derived from alignment at scaffold_7:623704..625038- (Nannochloropsis oceanica)
GCCAGCCAAGCTCAAGATAGTGCAATCTCTGATCTTTATCAATTTCAATC
TGACCCTGATCACTTGACCCTGATTACCTTGCCCACCACCAACACAGGAT
GGATGATCTGACTCTGGACCCCGCCGAGTACTTGGCAACCAAACGCCTCG
GGTCTTTGAAGTGGCTTGTCGAGCCTGCATCGTCATCAGTCCCTCCTCCG
AAGCCCGTTTCCCTCTCCCCTGACTTGCCCGTCCATCGATGCGTTTGCTG
CGAAACGCAGGCCGGCATTTTCGAACAGCACGTGGCTCAGTTCTTGACGT
CCAAGGAATTTGCAACTTTCTCAACCGTGATTCGGCGCCCGTTGGTTTTG
TCAAAAAGAGGGGAGGTTAGATGTCTGGACGGTCCGCTAGTCCCGCCCTT
TGGCTTGAACATCTGCGCGAACGACGGACCACGGACAGCAAAAGATTGTC
ACCACCATCCGCGCGTAGGGTACGTCCAGCAACCATTGCGGACGGAGGGT
GATGACCACGTGCTTTATTGGTTAGATGTTGGAAAACCTCAGCGCATTTT
AGAGGCTGGTGGTGCGAGAGGAGAGGGCGCTCAACGTGGCGACGGTGCGG
CCCGAAGGATCTCGGCTATCAAAAGTGGAAGCGAATGTTCGACACTTGCC
TCGTTAACGGCACCATCGAATGCACAGATCTCTAGCGTGAACAGCAATGG
CAGGACAACCTCTTCCAAGCAGCGTCCAAGCGGCGGGAAAGAGGACCGAG
AAGAAGCGGAGCGAATGCGAGCACAAGTCAGGTTGCCGCGCCTGGCAGCC
ACCCTCTTGGCAAGCCTTATGGGTGGCGGGGTCATGATGATTTTGGCGGT
ATGGCAACAACGTTTGAAGGGCGATCTGCCCCGCAATAATGGGATAATAC
TGCTGCTCGCTCTATATGCCCTTGTGGGGCTGGCGTGCTCCGGGGTGGGC
CTATGGATATGGCAGATGTATTCTGATCGCCAGCGCCTAATGGTTCCGAT
GCCCACTGCGAGCATGAATAGGAGGACAAGGGGCAAGGGGAGGGATCCGC
AGCATGTGGGCAGCGGCCATGACAGGCACGCACCAGACCGACCGAGAACG
CGCAATATCGAGGAAGCACAGTGCCTAATAGAAAGTGATGGCAACAATTA
CGGTAGCGGCCGGGGTGCACCGTGAATTGAAGTTAAAACGACAGCTTCAG
ATCATGACAGCGTATGTACATAACATTGGTAATGTGAAGTGGATGATGAG
GGAAATCGAAAGTAGAGGAAATCGTTTAACCATTTAGACATAATGTACCG
TTTCCAAATCGACATATTTTATTAATCATTTTATG
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Coding sequence (CDS) from alignment at scaffold_7:623704..625038-

>mRNA_3084 ID=mRNA_3084|Name=jgi.p|Nanoce1779_2|396313|organism=Nannochloropsis oceanica|type=CDS|length=1077bp|location=Sequence derived from alignment at scaffold_7:623704..625038- (Nannochloropsis oceanica)
ATGGATGATCTGACTCTGGACCCCGCCGAGTACTTGGCAACCAAACGCCT
CGGGTCTTTGAAGTGGCTTGTCGAGCCTGCATCGTCATCAGTCCCTCCTC
CGAAGCCCGTTTCCCTCTCCCCTGACTTGCCCGTCCATCGATGCGTTTGC
TGCGAAACGCAGGCCGGCATTTTCGAACAGCACGTGGCTCAGTTCTTGAC
GTCCAAGGAATTTGCAACTTTCTCAACCGTGATTCGGCGCCCGTTGGTTT
TGTCAAAAAGAGGGGAGGTTAGATGTCTGGACGGTCCGCTAGTCCCGCCC
TTTGGCTTGAACATCTGCGCGAACGACGGACCACGGACAGCAAAAGATTG
TCACCACCATCCGCGCGTAGGGTACGTCCAGCAACCATTGCGGACGGAGG
GTGATGACCACGTGCTTTATTGGTTAGATGTTGGAAAACCTCAGCGCATT
TTAGAGGCTGGTGGTGCGAGAGGAGAGGGCGCTCAACGTGGCGACGGTGC
GGCCCGAAGGATCTCGGCTATCAAAAGTGGAAGCGAATGTTCGACACTTG
CCTCGTTAACGGCACCATCGAATGCACAGATCTCTAGCGTGAACAGCAAT
GGCAGGACAACCTCTTCCAAGCAGCGTCCAAGCGGCGGGAAAGAGGACCG
AGAAGAAGCGGAGCGAATGCGAGCACAAGTCAGGTTGCCGCGCCTGGCAG
CCACCCTCTTGGCAAGCCTTATGGGTGGCGGGGTCATGATGATTTTGGCG
GTATGGCAACAACGTTTGAAGGGCGATCTGCCCCGCAATAATGGGATAAT
ACTGCTGCTCGCTCTATATGCCCTTGTGGGGCTGGCGTGCTCCGGGGTGG
GCCTATGGATATGGCAGATGTATTCTGATCGCCAGCGCCTAATGGTTCCG
ATGCCCACTGCGAGCATGAATAGGAGGACAAGGGGCAAGGGGAGGGATCC
GCAGCATGTGGGCAGCGGCCATGACAGGCACGCACCAGACCGACCGAGAA
CGCGCAATATCGAGGAAGCACAGTGCCTAATAGAAAGTGATGGCAACAAT
TACGGTAGCGGCCGGGGTGCACCGTGA
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Synonyms
Publications