jgi.p|Nanoce1779_2|669881, mRNA_3081 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|669881
Unique NamemRNA_3081
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1512
Alignment locationscaffold_7:619034..620545 +

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Properties
Property NameValue
TranscriptId669967
TrackFilteredModels2
ProteinId669881
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:619034..620545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669881gene_3081Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669881mRNA_3081-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3081CDS_3081Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3081 ID=mRNA_3081|Name=jgi.p|Nanoce1779_2|669881|organism=Nannochloropsis oceanica|type=mRNA|length=1512bp
CGTGGGTGTGTGTTGATGCGCATGAGGTCCCTGTGCCCACTTGTGGGTTG
CTTATTTCTATTTAATCATCCATGCTGTATCTTAGGTCACCGCAAATTAA
CACAATCAAGAGGCGAAAAATCTTGTCATGTACAAATTCGTGTAAGATCA
CCCAAATACCCTCGAAACCAACGCCATCCACACACATAACACACTACAGG
AATTCTCCACTTGTCCCTTGTTTGCAAAATGAAGCTCCGGGCGCTGACCA
TCGGCATCAAGATCGAGAGCCTCGAGGAGCTTGAAGGGGCCTTATTGCGT
GCTGCTGTCTTGGGGGACGAGCTACGCAAAGGAATCGAGGCAGAGCTCGA
GGGCGGGATGGAGGTACAAACCGTCCGCATAGCCACCAACTCCTTTGAGG
AATGGATAGGATGCCTAGATGAGAACGAGAAAGGGGGCAATGATTATACA
ATGGCGGACAGTGGCAGCGGCACCACTAGTTTAGCAACGAAAGCTACTAT
AATTGCCCAAATCATCAACGCTACGGGAATCGAGTTTTGCAGCTTAGGAC
CAGCCCTTACTGTGAATGGCATCCGAGCTATTCCCACGTTGCTAAAGGCA
TCAAGTCGTATAAGTGCTTCCGCGGCATTACGTTGTTGGGAGGAGAGAGA
TGGACCGGAGTTGGAGGCACTCGATGAGGCGAAGCGAGACGCCGTCGTGG
AAGTCATGGTCGCGCTGGCACAAGTAGGAGAAGGGCTGGGCAATTTCCGC
TTTGCTGCGGGGGTGGACATCGAGCCAAACACGCCCTTTTTCCCCGTAGC
ATTTCATGACGCCAGCAAACCCACTACGGTCAGCATCGGGACCGAGAACA
GCGACCTTGTCGTGGAAGCGTTCGAGAATGCGGGGGAGGAGGGCATAGTC
GGGGCAGCTCAGCGTCTACAAACTGCTATGAATACGCGCTTACTGTCCTT
GGAGGCGTTGGTGCGGCGATTGCTGCTAGCAAGACCGGCTGATGCACCTG
TGGTGGTTTATGGGGGAATCGACACGAGTATAAACCCGTCGATAGGAGGT
CCAAACCACAGCCTGGTGAGGGCTTATGAGATGGTAGTGGGCGAAGGACG
TTTTGGAAAGAGCGGGACGTTGGCCGTGTCGGAAGCGTTGACCAGGGTGG
TGTATAACGGGCTGCCAGGCTTGAAAAAAGTAGGTTTTTGTGGTCTCATG
CTTCCTGCGATGGAGGATCACTTGCTAGCTGCGCGGGCTAGTCAACATGT
CCCCGCCTATGGTATCTCGGATCTCCTGGCGTTTTCTGCTGTGTGTGGGG
TTGGTATCGATACGGTACCCGTCAGCTTGCCAGAGATTCAGGCAGCTCCT
ACGAGAGTCAAGGCTTTGCTCTTGGACATGGCTGCTCTGTCTCGGAAAAA
GGGGCGGCCGCTTGCTTGTCGGCTCTTCCCCGTGGTCGGGGGGAAGGTGG
GAGATATGACAACATTTGATTCACCTTATCTTGTTAATTGCGCTATTTTT
GCCCTTCCTTAG
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protein sequence of jgi.p|Nanoce1779_2|669881

>mRNA_3081-protein ID=mRNA_3081-protein|Name=jgi.p|Nanoce1779_2|669881|organism=Nannochloropsis oceanica|type=polypeptide|length=428bp
MKLRALTIGIKIESLEELEGALLRAAVLGDELRKGIEAELEGGMEVQTVR
IATNSFEEWIGCLDENEKGGNDYTMADSGSGTTSLATKATIIAQIINATG
IEFCSLGPALTVNGIRAIPTLLKASSRISASAALRCWEERDGPELEALDE
AKRDAVVEVMVALAQVGEGLGNFRFAAGVDIEPNTPFFPVAFHDASKPTT
VSIGTENSDLVVEAFENAGEEGIVGAAQRLQTAMNTRLLSLEALVRRLLL
ARPADAPVVVYGGIDTSINPSIGGPNHSLVRAYEMVVGEGRFGKSGTLAV
SEALTRVVYNGLPGLKKVGFCGLMLPAMEDHLLAARASQHVPAYGISDLL
AFSAVCGVGIDTVPVSLPEIQAAPTRVKALLLDMAALSRKKGRPLACRLF
PVVGGKVGDMTTFDSPYLVNCAIFALP*
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mRNA from alignment at scaffold_7:619034..620545+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3081 ID=mRNA_3081|Name=jgi.p|Nanoce1779_2|669881|organism=Nannochloropsis oceanica|type=mRNA|length=1512bp|location=Sequence derived from alignment at scaffold_7:619034..620545+ (Nannochloropsis oceanica)
CGTGGGTGTGTGTTGATGCGCATGAGGTCCCTGTGCCCACTTGTGGGTTG
CTTATTTCTATTTAATCATCCATGCTGTATCTTAGGTCACCGCAAATTAA
CACAATCAAGAGGCGAAAAATCTTGTCATGTACAAATTCGTGTAAGATCA
CCCAAATACCCTCGAAACCAACGCCATCCACACACATAACACACTACAGG
AATTCTCCACTTGTCCCTTGTTTGCAAAATGAAGCTCCGGGCGCTGACCA
TCGGCATCAAGATCGAGAGCCTCGAGGAGCTTGAAGGGGCCTTATTGCGT
GCTGCTGTCTTGGGGGACGAGCTACGCAAAGGAATCGAGGCAGAGCTCGA
GGGCGGGATGGAGGTACAAACCGTCCGCATAGCCACCAACTCCTTTGAGG
AATGGATAGGATGCCTAGATGAGAACGAGAAAGGGGGCAATGATTATACA
ATGGCGGACAGTGGCAGCGGCACCACTAGTTTAGCAACGAAAGCTACTAT
AATTGCCCAAATCATCAACGCTACGGGAATCGAGTTTTGCAGCTTAGGAC
CAGCCCTTACTGTGAATGGCATCCGAGCTATTCCCACGTTGCTAAAGGCA
TCAAGTCGTATAAGTGCTTCCGCGGCATTACGTTGTTGGGAGGAGAGAGA
TGGACCGGAGTTGGAGGCACTCGATGAGGCGAAGCGAGACGCCGTCGTGG
AAGTCATGGTCGCGCTGGCACAAGTAGGAGAAGGGCTGGGCAATTTCCGC
TTTGCTGCGGGGGTGGACATCGAGCCAAACACGCCCTTTTTCCCCGTAGC
ATTTCATGACGCCAGCAAACCCACTACGGTCAGCATCGGGACCGAGAACA
GCGACCTTGTCGTGGAAGCGTTCGAGAATGCGGGGGAGGAGGGCATAGTC
GGGGCAGCTCAGCGTCTACAAACTGCTATGAATACGCGCTTACTGTCCTT
GGAGGCGTTGGTGCGGCGATTGCTGCTAGCAAGACCGGCTGATGCACCTG
TGGTGGTTTATGGGGGAATCGACACGAGTATAAACCCGTCGATAGGAGGT
CCAAACCACAGCCTGGTGAGGGCTTATGAGATGGTAGTGGGCGAAGGACG
TTTTGGAAAGAGCGGGACGTTGGCCGTGTCGGAAGCGTTGACCAGGGTGG
TGTATAACGGGCTGCCAGGCTTGAAAAAAGTAGGTTTTTGTGGTCTCATG
CTTCCTGCGATGGAGGATCACTTGCTAGCTGCGCGGGCTAGTCAACATGT
CCCCGCCTATGGTATCTCGGATCTCCTGGCGTTTTCTGCTGTGTGTGGGG
TTGGTATCGATACGGTACCCGTCAGCTTGCCAGAGATTCAGGCAGCTCCT
ACGAGAGTCAAGGCTTTGCTCTTGGACATGGCTGCTCTGTCTCGGAAAAA
GGGGCGGCCGCTTGCTTGTCGGCTCTTCCCCGTGGTCGGGGGGAAGGTGG
GAGATATGACAACATTTGATTCACCTTATCTTGTTAATTGCGCTATTTTT
GCCCTTCCTTAG
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Coding sequence (CDS) from alignment at scaffold_7:619034..620545+

>mRNA_3081 ID=mRNA_3081|Name=jgi.p|Nanoce1779_2|669881|organism=Nannochloropsis oceanica|type=CDS|length=1284bp|location=Sequence derived from alignment at scaffold_7:619034..620545+ (Nannochloropsis oceanica)
ATGAAGCTCCGGGCGCTGACCATCGGCATCAAGATCGAGAGCCTCGAGGA
GCTTGAAGGGGCCTTATTGCGTGCTGCTGTCTTGGGGGACGAGCTACGCA
AAGGAATCGAGGCAGAGCTCGAGGGCGGGATGGAGGTACAAACCGTCCGC
ATAGCCACCAACTCCTTTGAGGAATGGATAGGATGCCTAGATGAGAACGA
GAAAGGGGGCAATGATTATACAATGGCGGACAGTGGCAGCGGCACCACTA
GTTTAGCAACGAAAGCTACTATAATTGCCCAAATCATCAACGCTACGGGA
ATCGAGTTTTGCAGCTTAGGACCAGCCCTTACTGTGAATGGCATCCGAGC
TATTCCCACGTTGCTAAAGGCATCAAGTCGTATAAGTGCTTCCGCGGCAT
TACGTTGTTGGGAGGAGAGAGATGGACCGGAGTTGGAGGCACTCGATGAG
GCGAAGCGAGACGCCGTCGTGGAAGTCATGGTCGCGCTGGCACAAGTAGG
AGAAGGGCTGGGCAATTTCCGCTTTGCTGCGGGGGTGGACATCGAGCCAA
ACACGCCCTTTTTCCCCGTAGCATTTCATGACGCCAGCAAACCCACTACG
GTCAGCATCGGGACCGAGAACAGCGACCTTGTCGTGGAAGCGTTCGAGAA
TGCGGGGGAGGAGGGCATAGTCGGGGCAGCTCAGCGTCTACAAACTGCTA
TGAATACGCGCTTACTGTCCTTGGAGGCGTTGGTGCGGCGATTGCTGCTA
GCAAGACCGGCTGATGCACCTGTGGTGGTTTATGGGGGAATCGACACGAG
TATAAACCCGTCGATAGGAGGTCCAAACCACAGCCTGGTGAGGGCTTATG
AGATGGTAGTGGGCGAAGGACGTTTTGGAAAGAGCGGGACGTTGGCCGTG
TCGGAAGCGTTGACCAGGGTGGTGTATAACGGGCTGCCAGGCTTGAAAAA
AGTAGGTTTTTGTGGTCTCATGCTTCCTGCGATGGAGGATCACTTGCTAG
CTGCGCGGGCTAGTCAACATGTCCCCGCCTATGGTATCTCGGATCTCCTG
GCGTTTTCTGCTGTGTGTGGGGTTGGTATCGATACGGTACCCGTCAGCTT
GCCAGAGATTCAGGCAGCTCCTACGAGAGTCAAGGCTTTGCTCTTGGACA
TGGCTGCTCTGTCTCGGAAAAAGGGGCGGCCGCTTGCTTGTCGGCTCTTC
CCCGTGGTCGGGGGGAAGGTGGGAGATATGACAACATTTGATTCACCTTA
TCTTGTTAATTGCGCTATTTTTGCCCTTCCTTAG
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Synonyms
Publications