jgi.p|Nanoce1779_2|576890, mRNA_308 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576890
Unique Name	mRNA_308
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1336
Alignment location	scaffold_3:756829..758462 +

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Properties


Property Name	Value
TranscriptId	576976
Track	FilteredModels2
ProteinId	576890

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:756829..758462 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576890	gene_308	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576890	mRNA_308-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_308	CDS_308	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:756829..758462+
coding sequence from alignment at scaffold_3:756829..758462+

mRNA sequence

>mRNA_308 ID=mRNA_308|Name=jgi.p|Nanoce1779_2|576890|organism=Nannochloropsis oceanica|type=mRNA|length=1336bp
ACGACAGCTTATCATTCTCAGAGCCGCCTTTGTCCACCGGCGCAAGAAGA
AGAGAAGAAGAGAAGAACACCTTGCTTCGCAGTATCGCCACCATCACCGA
CCATTTGTCCCCGGTAGAAGCAGTAAGCCCGATACCGAGCGCAACTGCTA
CTACCACCACTAATGTCTCGAACCGCACTCTGGTGATGTACGTGTACCAT
GAGTCCAACGAGTGGTACAAGGACAACCTCCGCTTCTTCATAAAAGTAGC
GATGCAAGACAACGACCACGACGATGTCGACTACCTGCTGATTATCAACG
GAGAAAGTAGCCTTCCCCTAGAGGTCATTCTGGCGACAACAGCAGCACAA
CGTGAAGGCCGTGTGCAACTCCTTCGGCGGCCCAATACCTGCTACGACGG
AGGCAGCATGGGGGAAGTCTTGCGAGCACGATCACGTCTAGCCGAGAGCT
ACCGGTACTACTTCTTAATGAACAGCTCCGTCCGTGGGCCATTTCTTCCA
CGCTACTTCCAAGCAATATTTAAGGCTAAATCTGCGGAGGTAGGCAGCGG
AGCTCTGGCCTGGACGTCCGTTCTGACGAGCTTGCTCGATGACGAGGTGA
AGCTTGCGGGAACGACTATCAGTTGTATGGGCCAGGTGCACGTACAGTCG
ATGGTCTTGGCCACTGATCAACTTGGGCTGGGGCTATTGTTGAACGGGGG
GGTGTTAGATTGTCCTACTAGTCTAAACGAGGCCATTCGCATATATGAGC
TTGGGGCGACGACTACTATTCTGGACGCGGGGTACAAGATCGACAGCCTC
CTGACACGCTATCGCGGAGTGGACTGGCGGCAAAAACGCGACTTGCGATG
CAATGCGAATATGAATCCACAGGGGGAACAGATGAATGATGGCCTAGGAC
TGGACCCCTTTGAGGTAGTATTCATCAAGGCCAAGGAATATCCGCGCGTG
GCTTCCACTCAAGCATTTCTGCGCCGATATACTGATTACGCGATGGGCCG
GGATGATCTAACCACCAACGGATTTAACTCACCCCGTGTACAAATGGCGC
TTGCCCAAGAGCGATCTGTGCTCAATGAGCGTGTGCTACGTTGCGAGGCC
TATTTTGATGCCGAATTTTACTTTAAACAGAACCCGGACTTGGTTGGCGC
TGTGCAGGAGGCACATGCCCTCAACCATTTTAACGATTACGGCTTTGTTG
AGCGACGGCCGTACCGATATAAAAGTGGCTGGAGGAAGTGGCACGACAAA
GATTGTCGCTGGGAATAAAAAAGATTGTACAGCGACTGAAGTGTTCATAA
ATTTAACAAAGAACCAATAGAGTAAATTGTCTTTTA

protein sequence of jgi.p|Nanoce1779_2|576890

>mRNA_308-protein ID=mRNA_308-protein|Name=jgi.p|Nanoce1779_2|576890|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MYVYHESNEWYKDNLRFFIKVAMQDNDHDDVDYLLIINGESSLPLEVILA
TTAAQREGRVQLLRRPNTCYDGGSMGEVLRARSRLAESYRYYFLMNSSVR
GPFLPRYFQAIFKAKSAEVGSGALAWTSVLTSLLDDEVKLAGTTISCMGQ
VHVQSMVLATDQLGLGLLLNGGVLDCPTSLNEAIRIYELGATTTILDAGY
KIDSLLTRYRGVDWRQKRDLRCNANMNPQGEQMNDGLGLDPFEVVFIKAK
EYPRVASTQAFLRRYTDYAMGRDDLTTNGFNSPRVQMALAQERSVLNERV
LRCEAYFDAEFYFKQNPDLVGAVQEAHALNHFNDYGFVERRPYRYKSGWR
KWHDKDCRWE*

mRNA from alignment at scaffold_3:756829..758462+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_308 ID=mRNA_308|Name=jgi.p|Nanoce1779_2|576890|organism=Nannochloropsis oceanica|type=mRNA|length=1634bp|location=Sequence derived from alignment at scaffold_3:756829..758462+ (Nannochloropsis oceanica)
ACGACAGCTTATCATTCTCAGAGCCGCCTTTGTCCACCGGCGCAAGAAGA
AGAGAAGAAGAGAAGAACACCTTGCTTCGCAGTATCGCCACCATCACCGA
CCATTTGTCCCCGGTAGAAGCAGTAAGCCCGATACCGAGCGCAACTGCTA
CTACCACCACTAATGTCTCGAACCGCACTCTGGTGATGTACGTGTACCAT
GAGTCCAACGAGTGGTACAAGGACAACCTCCGCTTCTTCATAAAAGTAGC
GATGCAAGACAACGACCACGACGATGTCGACTACCTGCTGATTATCAACG
GAGAAAGTAGCCTTCCCCTAGAGGTCATTCTGGCGACAACAGCAGCACAA
CGTGAAGGCCGTGTGCAACTCCTTCGGCGGCCCAATACCTGCTACGACGG
AGGCAGCATGGGGGAAGTCTTGCGAGCACGATCACGTCTAGCCGAGAGCT
ACCGGTACTACTTCTTAATGAACAGCTCCGTCCGTGGGCCATTTCTTCCA
CGCTACTTCCAAGCAATATTTAAGGCTAAATCTGCGGAGGTAGGCAGCGG
AGCTCTGGCCTGGACGTCCGTTCTGACGAGCTTGCTCGATGACGAGGTGA
AGCTTGCGGGAACGACTATCAGTTGTATGGGCCAGGTGCACGTACAGTCG
ATGGTCTTGGCCACTGATCAACTTGGGCTGGGGCTATTGTTGAACGGGGG
GGTGTTAGATTGTCCTACTAGTCTAAACGAGGCCATTCGCATATATGAGC
TTGGGGCGACGACTACTATTCTGGACGCGGGGTAAGTGCACTTGGGTGAT
GGAGGGGGGAAGGATAGATCTTGTGCCTGTCATGATTGCCATCCCTTTGG
TCCATAGAAATAAAAGGATCATACATTGCTGGTTGTGATGAATTTGGGTT
TTGGGTCTTGTGTGCTTCAATTGATCCCTCGTAGACTCCCCTGTTTCTGC
TTGTCGAATCACGACGGGCACATGTTGTGATCATTACCATTCTGTTCATG
TACACCATGATCAATCTGGCTGTACATCGGCATGTCCAATTATCCCTTAA
CTTGCTCTCAAACGCACGTAATTCACAAGGTACAAGATCGACAGCCTCCT
GACACGCTATCGCGGAGTGGACTGGCGGCAAAAACGCGACTTGCGATGCA
ATGCGAATATGAATCCACAGGGGGAACAGATGAATGATGGCCTAGGACTG
GACCCCTTTGAGGTAGTATTCATCAAGGCCAAGGAATATCCGCGCGTGGC
TTCCACTCAAGCATTTCTGCGCCGATATACTGATTACGCGATGGGCCGGG
ATGATCTAACCACCAACGGATTTAACTCACCCCGTGTACAAATGGCGCTT
GCCCAAGAGCGATCTGTGCTCAATGAGCGTGTGCTACGTTGCGAGGCCTA
TTTTGATGCCGAATTTTACTTTAAACAGAACCCGGACTTGGTTGGCGCTG
TGCAGGAGGCACATGCCCTCAACCATTTTAACGATTACGGCTTTGTTGAG
CGACGGCCGTACCGATATAAAAGTGGCTGGAGGAAGTGGCACGACAAAGA
TTGTCGCTGGGAATAAAAAAGATTGTACAGCGACTGAAGTGTTCATAAAT
TTAACAAAGAACCAATAGAGTAAATTGTCTTTTA

Coding sequence (CDS) from alignment at scaffold_3:756829..758462+

>mRNA_308 ID=mRNA_308|Name=jgi.p|Nanoce1779_2|576890|organism=Nannochloropsis oceanica|type=CDS|length=2166bp|location=Sequence derived from alignment at scaffold_3:756829..758462+ (Nannochloropsis oceanica)
ATGTACGTGTACCATGAGTCCAACGAGTGGTACAAGGACAACCTCCGCTT
CTTCATAAAAGTAGCGATGCAAGACAACGACCACGACGATGTCGACTACC
TGCTGATTATCAACGGAGAAAGTAGCCTTCCCCTAGAGGTCATTCTGGCG
ACAACAGCAGCACAACGTGAAGGCCGTGTGCAACTCCTTCGGCGGCCCAA
TACCTGCTACGACGGAGGCAGCATGGGGGAAGTCTTGCGAGCACGATCAC
GTCTAGCCGAGAGCTACCGGTACTACTTCTTAATGAACAGCTCCGTCCGT
GGGCCATTTCTTCCACGCTACTTCCAAGCAATATTTAAGGCTAAATCTGC
GGAGGTAGGCAGCGGAGCTCTGGCCTGGACGTCCGTTCTGACGAGCTTGC
TCGATGACGAGGTGAAGCTTGCGGGAACGACTATCAGTTGTATGGGCCAG
GTGCACGTACAGTCGATGGTCTTGGCCACTGATCAACTTGGGCTGGGGCT
ATTGTTGAACGGGGGGGTGTTAGATTGTCCTACTAGTCTAAACGAGGCCA
TTCGCATATATGAGCTTGGGGCGACGACTACTATTCTGGACGCGGGGTAC
AAGATCGACAGCCTCCTGACACGCTATCGCGGAGTGGACTGGCGGCAAAA
ACGCGACTTGCGATGCAATGCGAATATGAATCCACAGGGGGAACAGATGA
ATGATGGCCTAGGACTGGACCCCTTTGAGGTAGTATTCATCAAGGCCAAG
GAATATCCGCGCGTGGCTTCCACTCAAGCATTTCTGCGCCGATATACTGA
TTACGCGATGGGCCGGGATGATCTAACCACCAACGGATTTAACTCACCCC
GTGTACAAATGGCGCTTGCCCAAGAGCGATCTGTGCTCAATGAGCGTGTG
CTACGTTGCGAGGCCTATTTTGATGCCGAATTTTACTTTAAACAGAACCC
GGACTTGGTTGGCGCTGTGCAGGAGGCACATGCCCTCAACCATTTTAACG
ATTACGGCTTTGTTGAGCGACGGCCGTACCGATATAAAAGTGGCTGGAGG
AAGTGGCACGACAAAGATTGTCGCTGGGAATAAATGTACGTGTACCATGA
GTCCAACGAGTGGTACAAGGACAACCTCCGCTTCTTCATAAAAGTAGCGA
TGCAAGACAACGACCACGACGATGTCGACTACCTGCTGATTATCAACGGA
GAAAGTAGCCTTCCCCTAGAGGTCATTCTGGCGACAACAGCAGCACAACG
TGAAGGCCGTGTGCAACTCCTTCGGCGGCCCAATACCTGCTACGACGGAG
GCAGCATGGGGGAAGTCTTGCGAGCACGATCACGTCTAGCCGAGAGCTAC
CGGTACTACTTCTTAATGAACAGCTCCGTCCGTGGGCCATTTCTTCCACG
CTACTTCCAAGCAATATTTAAGGCTAAATCTGCGGAGGTAGGCAGCGGAG
CTCTGGCCTGGACGTCCGTTCTGACGAGCTTGCTCGATGACGAGGTGAAG
CTTGCGGGAACGACTATCAGTTGTATGGGCCAGGTGCACGTACAGTCGAT
GGTCTTGGCCACTGATCAACTTGGGCTGGGGCTATTGTTGAACGGGGGGG
TGTTAGATTGTCCTACTAGTCTAAACGAGGCCATTCGCATATATGAGCTT
GGGGCGACGACTACTATTCTGGACGCGGGGTACAAGATCGACAGCCTCCT
GACACGCTATCGCGGAGTGGACTGGCGGCAAAAACGCGACTTGCGATGCA
ATGCGAATATGAATCCACAGGGGGAACAGATGAATGATGGCCTAGGACTG
GACCCCTTTGAGGTAGTATTCATCAAGGCCAAGGAATATCCGCGCGTGGC
TTCCACTCAAGCATTTCTGCGCCGATATACTGATTACGCGATGGGCCGGG
ATGATCTAACCACCAACGGATTTAACTCACCCCGTGTACAAATGGCGCTT
GCCCAAGAGCGATCTGTGCTCAATGAGCGTGTGCTACGTTGCGAGGCCTA
TTTTGATGCCGAATTTTACTTTAAACAGAACCCGGACTTGGTTGGCGCTG
TGCAGGAGGCACATGCCCTCAACCATTTTAACGATTACGGCTTTGTTGAG
CGACGGCCGTACCGATATAAAAGTGGCTGGAGGAAGTGGCACGACAAAGA
TTGTCGCTGGGAATAA

Synonyms

Publications