jgi.p|Nanoce1779_2|584470, mRNA_3076 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584470
Unique NamemRNA_3076
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1259
Alignment locationscaffold_7:608622..609880 +

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Properties
Property NameValue
TranscriptId584556
TrackFilteredModels2
ProteinId584470
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:608622..609880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584470gene_3076Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584470mRNA_3076-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3076CDS_3076Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3076 ID=mRNA_3076|Name=jgi.p|Nanoce1779_2|584470|organism=Nannochloropsis oceanica|type=mRNA|length=1259bp
AGCACATTCTACAAGAGGGATGCATGAAACAAGGACGTCAACGCTTGCCT
GACCTGACAGCCACTATGCTTCTTCCCCTTCTGCTCCTCTTCCTGTGCCC
TGCGGCTATTGCGTTCAGCATGTCCTCGCTTCCTTCAACCTCCTCCCTCT
TCGTGTTTGGCCTGGGGTACGTGGGAAGCCGCTTGGCGCAGAAACTGGCA
CCAGCGTGGGAGGTTGGCGGCACTGTGTCGTCTTTGTCTTCCTCGCTACC
CTTTTCCCCCCAGGTACGTGAGTGGGAATTCGATGCCAGGCCGTCAAATC
CCACGCTCCTGGACGCTGCGGCGCTGGCGGCGTTGCGACAAGCCACGCAC
GTCCTAGTGACCATCCCACCTGTAGACGGCACGGACATGGTGGTGAAACT
GTATGGCTCCCATCTATCAAACCAATGCCCCCGTTTGCGCTGGGTTGGGT
ACTTAAGCTCCACGAGTGTCTATGGCGATCGAGGTGGTGACTTGGTATCA
GAGGAGGATGAAGTGCGGCCCGTTACGTCCAAGGGTGTGGCGCGTGTGGA
GGCCGAGGCAGCGTGGATGGAGCTGGTTCGGCAGGTACCAAGCCAGCTCT
CACATTTACGTATTTTCCGGTTAGCTGGTATCTATGGCCCGGGAAGGAAC
GCTTTGGAGACGATGAGGCGGGGGTTGCAGGGGGCGCAAGCAGGGCCAGA
TATCTCAAGTCTTGATGGCGACCGGTGGGTGAGCCGCATTCATGTCGAGG
ATATAGTTCGAGTGCTCCAGTGTTCTATGGAAGACGACAGCCGGGATGGT
GGCCAAGTGGAGATCTATAACGTGGCTGACGACCAGCCTGCCTCTCGCCT
GGAGGTTTTTTCCTTCGCGGCTGCTTTGCTGGGCAATAAAGGAGCTGCCA
ATCTGATTGCTAACCCACCAGGATTCTCCCCGTCCGTAACCCCTCCCTCC
TCCCGTCGTGCCCGGCCTCCAGAGAGCAAGCGGGTGGCTAACAACAAAAT
AAAGGAGCTTCTACTAGGTGGCAGCGCGGCATCCTCTTCCTCGACGTCGC
CTTTACGATACCCCACATATGAGGAGGGATTGAGGCACATATGCGAGGAA
ATGGACGTGTGGAGATACTAAGCTGCCTATTGTCAACATTAGGCTGGGAC
ACCAAAATAGTGTGTACAATGGAATGAATTGAGGGTCTTCCACCTCCGGG
CACAAGAAACGGTGCTAAGCATCATTTCTTTCCCTGAATCAAATTTTTCC
CTTTTCTAT
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protein sequence of jgi.p|Nanoce1779_2|584470

>mRNA_3076-protein ID=mRNA_3076-protein|Name=jgi.p|Nanoce1779_2|584470|organism=Nannochloropsis oceanica|type=polypeptide|length=366bp
MKQGRQRLPDLTATMLLPLLLLFLCPAAIAFSMSSLPSTSSLFVFGLGYV
GSRLAQKLAPAWEVGGTVSSLSSSLPFSPQVREWEFDARPSNPTLLDAAA
LAALRQATHVLVTIPPVDGTDMVVKLYGSHLSNQCPRLRWVGYLSSTSVY
GDRGGDLVSEEDEVRPVTSKGVARVEAEAAWMELVRQVPSQLSHLRIFRL
AGIYGPGRNALETMRRGLQGAQAGPDISSLDGDRWVSRIHVEDIVRVLQC
SMEDDSRDGGQVEIYNVADDQPASRLEVFSFAAALLGNKGAANLIANPPG
FSPSVTPPSSRRARPPESKRVANNKIKELLLGGSAASSSSTSPLRYPTYE
EGLRHICEEMDVWRY*
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mRNA from alignment at scaffold_7:608622..609880+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3076 ID=mRNA_3076|Name=jgi.p|Nanoce1779_2|584470|organism=Nannochloropsis oceanica|type=mRNA|length=1259bp|location=Sequence derived from alignment at scaffold_7:608622..609880+ (Nannochloropsis oceanica)
AGCACATTCTACAAGAGGGATGCATGAAACAAGGACGTCAACGCTTGCCT
GACCTGACAGCCACTATGCTTCTTCCCCTTCTGCTCCTCTTCCTGTGCCC
TGCGGCTATTGCGTTCAGCATGTCCTCGCTTCCTTCAACCTCCTCCCTCT
TCGTGTTTGGCCTGGGGTACGTGGGAAGCCGCTTGGCGCAGAAACTGGCA
CCAGCGTGGGAGGTTGGCGGCACTGTGTCGTCTTTGTCTTCCTCGCTACC
CTTTTCCCCCCAGGTACGTGAGTGGGAATTCGATGCCAGGCCGTCAAATC
CCACGCTCCTGGACGCTGCGGCGCTGGCGGCGTTGCGACAAGCCACGCAC
GTCCTAGTGACCATCCCACCTGTAGACGGCACGGACATGGTGGTGAAACT
GTATGGCTCCCATCTATCAAACCAATGCCCCCGTTTGCGCTGGGTTGGGT
ACTTAAGCTCCACGAGTGTCTATGGCGATCGAGGTGGTGACTTGGTATCA
GAGGAGGATGAAGTGCGGCCCGTTACGTCCAAGGGTGTGGCGCGTGTGGA
GGCCGAGGCAGCGTGGATGGAGCTGGTTCGGCAGGTACCAAGCCAGCTCT
CACATTTACGTATTTTCCGGTTAGCTGGTATCTATGGCCCGGGAAGGAAC
GCTTTGGAGACGATGAGGCGGGGGTTGCAGGGGGCGCAAGCAGGGCCAGA
TATCTCAAGTCTTGATGGCGACCGGTGGGTGAGCCGCATTCATGTCGAGG
ATATAGTTCGAGTGCTCCAGTGTTCTATGGAAGACGACAGCCGGGATGGT
GGCCAAGTGGAGATCTATAACGTGGCTGACGACCAGCCTGCCTCTCGCCT
GGAGGTTTTTTCCTTCGCGGCTGCTTTGCTGGGCAATAAAGGAGCTGCCA
ATCTGATTGCTAACCCACCAGGATTCTCCCCGTCCGTAACCCCTCCCTCC
TCCCGTCGTGCCCGGCCTCCAGAGAGCAAGCGGGTGGCTAACAACAAAAT
AAAGGAGCTTCTACTAGGTGGCAGCGCGGCATCCTCTTCCTCGACGTCGC
CTTTACGATACCCCACATATGAGGAGGGATTGAGGCACATATGCGAGGAA
ATGGACGTGTGGAGATACTAAGCTGCCTATTGTCAACATTAGGCTGGGAC
ACCAAAATAGTGTGTACAATGGAATGAATTGAGGGTCTTCCACCTCCGGG
CACAAGAAACGGTGCTAAGCATCATTTCTTTCCCTGAATCAAATTTTTCC
CTTTTCTAT
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Coding sequence (CDS) from alignment at scaffold_7:608622..609880+

>mRNA_3076 ID=mRNA_3076|Name=jgi.p|Nanoce1779_2|584470|organism=Nannochloropsis oceanica|type=CDS|length=1098bp|location=Sequence derived from alignment at scaffold_7:608622..609880+ (Nannochloropsis oceanica)
ATGAAACAAGGACGTCAACGCTTGCCTGACCTGACAGCCACTATGCTTCT
TCCCCTTCTGCTCCTCTTCCTGTGCCCTGCGGCTATTGCGTTCAGCATGT
CCTCGCTTCCTTCAACCTCCTCCCTCTTCGTGTTTGGCCTGGGGTACGTG
GGAAGCCGCTTGGCGCAGAAACTGGCACCAGCGTGGGAGGTTGGCGGCAC
TGTGTCGTCTTTGTCTTCCTCGCTACCCTTTTCCCCCCAGGTACGTGAGT
GGGAATTCGATGCCAGGCCGTCAAATCCCACGCTCCTGGACGCTGCGGCG
CTGGCGGCGTTGCGACAAGCCACGCACGTCCTAGTGACCATCCCACCTGT
AGACGGCACGGACATGGTGGTGAAACTGTATGGCTCCCATCTATCAAACC
AATGCCCCCGTTTGCGCTGGGTTGGGTACTTAAGCTCCACGAGTGTCTAT
GGCGATCGAGGTGGTGACTTGGTATCAGAGGAGGATGAAGTGCGGCCCGT
TACGTCCAAGGGTGTGGCGCGTGTGGAGGCCGAGGCAGCGTGGATGGAGC
TGGTTCGGCAGGTACCAAGCCAGCTCTCACATTTACGTATTTTCCGGTTA
GCTGGTATCTATGGCCCGGGAAGGAACGCTTTGGAGACGATGAGGCGGGG
GTTGCAGGGGGCGCAAGCAGGGCCAGATATCTCAAGTCTTGATGGCGACC
GGTGGGTGAGCCGCATTCATGTCGAGGATATAGTTCGAGTGCTCCAGTGT
TCTATGGAAGACGACAGCCGGGATGGTGGCCAAGTGGAGATCTATAACGT
GGCTGACGACCAGCCTGCCTCTCGCCTGGAGGTTTTTTCCTTCGCGGCTG
CTTTGCTGGGCAATAAAGGAGCTGCCAATCTGATTGCTAACCCACCAGGA
TTCTCCCCGTCCGTAACCCCTCCCTCCTCCCGTCGTGCCCGGCCTCCAGA
GAGCAAGCGGGTGGCTAACAACAAAATAAAGGAGCTTCTACTAGGTGGCA
GCGCGGCATCCTCTTCCTCGACGTCGCCTTTACGATACCCCACATATGAG
GAGGGATTGAGGCACATATGCGAGGAAATGGACGTGTGGAGATACTAA
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Synonyms
Publications