jgi.p|Nanoce1779_2|584468, mRNA_3075 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584468
Unique Name	mRNA_3075
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1490
Alignment location	scaffold_7:606876..608570 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584554
Track	FilteredModels2
ProteinId	584468

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:606876..608570 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584468	gene_3075	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584468	mRNA_3075-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3075	CDS_3075	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:606876..608570-
coding sequence from alignment at scaffold_7:606876..608570-

mRNA sequence

>mRNA_3075 ID=mRNA_3075|Name=jgi.p|Nanoce1779_2|584468|organism=Nannochloropsis oceanica|type=mRNA|length=1490bp
AACGATTCAAAGAGTCTCTCATCGCTGATGACGACGGACTGTCTTTTGAC
ACTCACCCTGTACCCACAACACAAAGAGCACAGTTATGAGCGATGCAGCA
GCCCGTCGACGGGCCAAGATTCTGGCACAAAGGGGTGACCGGATGAAGCT
GGTGTCGGGCTTGGGGGCCGCGATTGCACAGGAGGGCAAGGACGAAGAAA
CAGCAGCCACTACCGCTGCCGCTGTGGGCCCTGCAGGAAGACTTGCTGCA
GATGGAGAGGGGGGGAAAGCGACAGCGCCTGAGGGCACTTGCGGCAGTGA
GACAGGCGGCGTTCGCGCACTGAATCGACGACGCTTGCAGGCCCGTAACA
TTCTCCTGTCGACGGCCACCTTAGCGGCAGCTGATTCTGTACAAAAAGAG
CAGCAGCAAGTAGAAAATTCAAATCTTGGGGACACGAATGTCGCGGCGTC
TGCGGAGGCCTCGTCGTGCTCTCCATCCCCCCGTTCCCCGTCTTCCCCTC
CACATCCTACTGTGCTTGCCAGCATGGCTCTCACTGCGTCTGCTACCTTG
ACAACGGGGGGCAACACTCTGCGTAAACGGTATCATGCATCTCGGGGCGA
CAACGACGACATCGTCGAGAAAACGACGACCAAAAATGGATCCACCACTC
TTCGCGTCGGGCCACCCTCTCCTCCCTCCCTCCTCAAGACCCTGACTGCC
TCGGACGCCATGGTCCGGTTTTGGCTCCTGTGCCTGGCCGGCGTCATTTC
CGGAATCTGGATCACGGTCTTGAATGCCACTTTTCTAGCAGACCTTCGGA
TGCAAGCACAGCGGCAGCAGCAGTACGAAGCCAGAGCGGCATTGGACGAG
TTTGTGGCCAAGGCCAGTCCGTCCCTCCATTTCCCCCCTTCCGAGTCAGG
GGGTGGAGGCAGCACCAAACGACTTGGGTGGTTAGCATGGTTTCATGGGT
TATTCTTACCAGAGGCCTTTGATTCCTTGCCCTTGCCCATCCTGGCATTG
GTTTGGCACGGTGTGGCTTTGATTTCCATGATGGCACTGCGATCAGGAGG
AGCGGCAAATGCTAGCTTGCAGGGAGCATGGACGGAGGCCGGGCAGGAAG
ATCCGTTGCTAGGGGAAGGTGAAAGTTATAGCAATAAGGGTTTTAGCGGT
AGTGGCAGTGTCGGGGGTGATGGTGGTTCGCCAGGGGAAAGTGCGAACAG
GTCAATTGTTGAGACGGTAGCGAGCTCATTGGGGTTGGGGTGGGTGTTGG
AGGGATGGAAGGTGGCGCAGACGGCTTGGCAAGATGTGCTGATATTTAGT
TTTTTCTTTCTTTTGGCTGTGGCGGCTTGTGCATGAAGAGACACACGATC
ATGTGGACAACAGAGAAAGCAAAGACAATTTGGAAAGGCGGAATGAAAAT
TAATGACTAACTGCAATGTTAAGAGTGACATTCATTCGTGCGGTTGATTG
TTACTCTTCGTGACCTTTGTTCGTTTATCGTGCCAGATAT

protein sequence of jgi.p|Nanoce1779_2|584468

>mRNA_3075-protein ID=mRNA_3075-protein|Name=jgi.p|Nanoce1779_2|584468|organism=Nannochloropsis oceanica|type=polypeptide|length=417bp
MSDAAARRRAKILAQRGDRMKLVSGLGAAIAQEGKDEETAATTAAAVGPA
GRLAADGEGGKATAPEGTCGSETGGVRALNRRRLQARNILLSTATLAAAD
SVQKEQQQVENSNLGDTNVAASAEASSCSPSPRSPSSPPHPTVLASMALT
ASATLTTGGNTLRKRYHASRGDNDDIVEKTTTKNGSTTLRVGPPSPPSLL
KTLTASDAMVRFWLLCLAGVISGIWITVLNATFLADLRMQAQRQQQYEAR
AALDEFVAKASPSLHFPPSESGGGGSTKRLGWLAWFHGLFLPEAFDSLPL
PILALVWHGVALISMMALRSGGAANASLQGAWTEAGQEDPLLGEGESYSN
KGFSGSGSVGGDGGSPGESANRSIVETVASSLGLGWVLEGWKVAQTAWQD
VLIFSFFFLLAVAACA*

mRNA from alignment at scaffold_7:606876..608570-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3075 ID=mRNA_3075|Name=jgi.p|Nanoce1779_2|584468|organism=Nannochloropsis oceanica|type=mRNA|length=1695bp|location=Sequence derived from alignment at scaffold_7:606876..608570- (Nannochloropsis oceanica)
AACGATTCAAAGAGTCTCTCATCGCTGATGACGACGGACTGTCTTTTGAC
ACTCACCCTGTACCCACAACACAAAGAGCACAGTTATGAGCGATGCAGCA
GCCCGTCGACGGGCCAAGATTCTGGCACAAAGGGGTGACCGGATGAAGCT
GGTGTCGGGCTTGGGGGCCGCGATTGCACAGGTAAGCTGATGGATGGAAA
GTGCGATTGAAGGCCTGCTTATGATTGGACCTCTGACCCACCGGCCTCGG
TTAGCAGGAGGGCAAGGACGAAGAAACAGCAGCCACTACCGCTGCCGCTG
TGGGCCCTGCAGGAAGACTTGCTGCAGATGGAGAGGGGGGGAAAGCGACA
GCGCCTGAGGGCACTTGCGGCAGTGAGACAGGCGGCGTTCGCGCACTGAA
TCGACGACGCTTGCAGGCCCGTAACATTCTCCTGTCGACGGCCACCTTAG
CGGCAGCTGATTCTGTACAAAAAGAGCAGCAGCAAGTAGAAAATTCAAAT
CTTGGGGACACGAATGTCGCGGCGTCTGCGGAGGCCTCGTCGTGCTCTCC
ATCCCCCCGTTCCCCGTCTTCCCCTCCACATCCTACTGTGCTTGCCAGCA
TGGCTCTCACTGCGTCTGCTACCTTGACAACGGGGGGCAACACTCTGCGT
AAACGGTATCATGCATCTCGGGGCGACAACGACGACATCGTCGAGAAAAC
GACGACCAAAAATGGATGTAAGGGAGAGGATGTATGCAGCATGCTTATTT
CATCGAAATTATGCTTAGCGATTGTCCGATAAGCCATATTCTTACATCTT
AATACCATTTGCTTGTACACCTCTTGCTCCCTTCAACGAAAAACAGCCAC
CACTCTTCGCGTCGGGCCACCCTCTCCTCCCTCCCTCCTCAAGACCCTGA
CTGCCTCGGACGCCATGGTCCGGTTTTGGCTCCTGTGCCTGGCCGGCGTC
ATTTCCGGAATCTGGATCACGGTCTTGAATGCCACTTTTCTAGCAGACCT
TCGGATGCAAGCACAGCGGCAGCAGCAGTACGAAGCCAGAGCGGCATTGG
ACGAGTTTGTGGCCAAGGCCAGTCCGTCCCTCCATTTCCCCCCTTCCGAG
TCAGGGGGTGGAGGCAGCACCAAACGACTTGGGTGGTTAGCATGGTTTCA
TGGGTTATTCTTACCAGAGGCCTTTGATTCCTTGCCCTTGCCCATCCTGG
CATTGGTTTGGCACGGTGTGGCTTTGATTTCCATGATGGCACTGCGATCA
GGAGGAGCGGCAAATGCTAGCTTGCAGGGAGCATGGACGGAGGCCGGGCA
GGAAGATCCGTTGCTAGGGGAAGGTGAAAGTTATAGCAATAAGGGTTTTA
GCGGTAGTGGCAGTGTCGGGGGTGATGGTGGTTCGCCAGGGGAAAGTGCG
AACAGGTCAATTGTTGAGACGGTAGCGAGCTCATTGGGGTTGGGGTGGGT
GTTGGAGGGATGGAAGGTGGCGCAGACGGCTTGGCAAGATGTGCTGATAT
TTAGTTTTTTCTTTCTTTTGGCTGTGGCGGCTTGTGCATGAAGAGACACA
CGATCATGTGGACAACAGAGAAAGCAAAGACAATTTGGAAAGGCGGAATG
AAAATTAATGACTAACTGCAATGTTAAGAGTGACATTCATTCGTGCGGTT
GATTGTTACTCTTCGTGACCTTTGTTCGTTTATCGTGCCAGATAT

Coding sequence (CDS) from alignment at scaffold_7:606876..608570-

>mRNA_3075 ID=mRNA_3075|Name=jgi.p|Nanoce1779_2|584468|organism=Nannochloropsis oceanica|type=CDS|length=3753bp|location=Sequence derived from alignment at scaffold_7:606876..608570- (Nannochloropsis oceanica)
CCACCACTCTTCGCGTCGGGCCACCCTCTCCTCCCTCCCTCCTCAAGACC
CTGACTGCCTCGGACGCCATGGTCCGGTTTTGGCTCCTGTGCCTGGCCGG
CGTCATTTCCGGAATCTGGATCACGGTCTTGAATGCCACTTTTCTAGCAG
ACCTTCGGATGCAAGCACAGCGGCAGCAGCAGTACGAAGCCAGAGCGGCA
TTGGACGAGTTTGTGGCCAAGGCCAGTCCGTCCCTCCATTTCCCCCCTTC
CGAGTCAGGGGGTGGAGGCAGCACCAAACGACTTGGGTGGTTAGCATGGT
TTCATGGGTTATTCTTACCAGAGGCCTTTGATTCCTTGCCCTTGCCCATC
CTGGCATTGGTTTGGCACGGTGTGGCTTTGATTTCCATGATGGCACTGCG
ATCAGGAGGAGCGGCAAATGCTAGCTTGCAGGGAGCATGGACGGAGGCCG
GGCAGGAAGATCCGTTGCTAGGGGAAGGTGAAAGTTATAGCAATAAGGGT
TTTAGCGGTAGTGGCAGTGTCGGGGGTGATGGTGGTTCGCCAGGGGAAAG
TGCGAACAGGTCAATTGTTGAGACGGTAGCGAGCTCATTGGGGTTGGGGT
GGGTGTTGGAGGGATGGAAGGTGGCGCAGACGGCTTGGCAAGATGTGCTG
ATATTTAGTTTTTTCTTTCTTTTGGCTGTGGCGGCTTGTGCATGAGAGGG
CAAGGACGAAGAAACAGCAGCCACTACCGCTGCCGCTGTGGGCCCTGCAG
GAAGACTTGCTGCAGATGGAGAGGGGGGGAAAGCGACAGCGCCTGAGGGC
ACTTGCGGCAGTGAGACAGGCGGCGTTCGCGCACTGAATCGACGACGCTT
GCAGGCCCGTAACATTCTCCTGTCGACGGCCACCTTAGCGGCAGCTGATT
CTGTACAAAAAGAGCAGCAGCAAGTAGAAAATTCAAATCTTGGGGACACG
AATGTCGCGGCGTCTGCGGAGGCCTCGTCGTGCTCTCCATCCCCCCGTTC
CCCGTCTTCCCCTCCACATCCTACTGTGCTTGCCAGCATGGCTCTCACTG
CGTCTGCTACCTTGACAACGGGGGGCAACACTCTGCGTAAACGGTATCAT
GCATCTCGGGGCGACAACGACGACATCGTCGAGAAAACGACGACCAAAAA
TGGATATGAGCGATGCAGCAGCCCGTCGACGGGCCAAGATTCTGGCACAA
AGGGGTGACCGGATGAAGCTGGTGTCGGGCTTGGGGGCCGCGATTGCACA
GCCACCACTCTTCGCGTCGGGCCACCCTCTCCTCCCTCCCTCCTCAAGAC
CCTGACTGCCTCGGACGCCATGGTCCGGTTTTGGCTCCTGTGCCTGGCCG
GCGTCATTTCCGGAATCTGGATCACGGTCTTGAATGCCACTTTTCTAGCA
GACCTTCGGATGCAAGCACAGCGGCAGCAGCAGTACGAAGCCAGAGCGGC
ATTGGACGAGTTTGTGGCCAAGGCCAGTCCGTCCCTCCATTTCCCCCCTT
CCGAGTCAGGGGGTGGAGGCAGCACCAAACGACTTGGGTGGTTAGCATGG
TTTCATGGGTTATTCTTACCAGAGGCCTTTGATTCCTTGCCCTTGCCCAT
CCTGGCATTGGTTTGGCACGGTGTGGCTTTGATTTCCATGATGGCACTGC
GATCAGGAGGAGCGGCAAATGCTAGCTTGCAGGGAGCATGGACGGAGGCC
GGGCAGGAAGATCCGTTGCTAGGGGAAGGTGAAAGTTATAGCAATAAGGG
TTTTAGCGGTAGTGGCAGTGTCGGGGGTGATGGTGGTTCGCCAGGGGAAA
GTGCGAACAGGTCAATTGTTGAGACGGTAGCGAGCTCATTGGGGTTGGGG
TGGGTGTTGGAGGGATGGAAGGTGGCGCAGACGGCTTGGCAAGATGTGCT
GATATTTAGTTTTTTCTTTCTTTTGGCTGTGGCGGCTTGTGCATGAGAGG
GCAAGGACGAAGAAACAGCAGCCACTACCGCTGCCGCTGTGGGCCCTGCA
GGAAGACTTGCTGCAGATGGAGAGGGGGGGAAAGCGACAGCGCCTGAGGG
CACTTGCGGCAGTGAGACAGGCGGCGTTCGCGCACTGAATCGACGACGCT
TGCAGGCCCGTAACATTCTCCTGTCGACGGCCACCTTAGCGGCAGCTGAT
TCTGTACAAAAAGAGCAGCAGCAAGTAGAAAATTCAAATCTTGGGGACAC
GAATGTCGCGGCGTCTGCGGAGGCCTCGTCGTGCTCTCCATCCCCCCGTT
CCCCGTCTTCCCCTCCACATCCTACTGTGCTTGCCAGCATGGCTCTCACT
GCGTCTGCTACCTTGACAACGGGGGGCAACACTCTGCGTAAACGGTATCA
TGCATCTCGGGGCGACAACGACGACATCGTCGAGAAAACGACGACCAAAA
ATGGATATGAGCGATGCAGCAGCCCGTCGACGGGCCAAGATTCTGGCACA
AAGGGGTGACCGGATGAAGCTGGTGTCGGGCTTGGGGGCCGCGATTGCAC
AGCCACCACTCTTCGCGTCGGGCCACCCTCTCCTCCCTCCCTCCTCAAGA
CCCTGACTGCCTCGGACGCCATGGTCCGGTTTTGGCTCCTGTGCCTGGCC
GGCGTCATTTCCGGAATCTGGATCACGGTCTTGAATGCCACTTTTCTAGC
AGACCTTCGGATGCAAGCACAGCGGCAGCAGCAGTACGAAGCCAGAGCGG
CATTGGACGAGTTTGTGGCCAAGGCCAGTCCGTCCCTCCATTTCCCCCCT
TCCGAGTCAGGGGGTGGAGGCAGCACCAAACGACTTGGGTGGTTAGCATG
GTTTCATGGGTTATTCTTACCAGAGGCCTTTGATTCCTTGCCCTTGCCCA
TCCTGGCATTGGTTTGGCACGGTGTGGCTTTGATTTCCATGATGGCACTG
CGATCAGGAGGAGCGGCAAATGCTAGCTTGCAGGGAGCATGGACGGAGGC
CGGGCAGGAAGATCCGTTGCTAGGGGAAGGTGAAAGTTATAGCAATAAGG
GTTTTAGCGGTAGTGGCAGTGTCGGGGGTGATGGTGGTTCGCCAGGGGAA
AGTGCGAACAGGTCAATTGTTGAGACGGTAGCGAGCTCATTGGGGTTGGG
GTGGGTGTTGGAGGGATGGAAGGTGGCGCAGACGGCTTGGCAAGATGTGC
TGATATTTAGTTTTTTCTTTCTTTTGGCTGTGGCGGCTTGTGCATGAGAG
GGCAAGGACGAAGAAACAGCAGCCACTACCGCTGCCGCTGTGGGCCCTGC
AGGAAGACTTGCTGCAGATGGAGAGGGGGGGAAAGCGACAGCGCCTGAGG
GCACTTGCGGCAGTGAGACAGGCGGCGTTCGCGCACTGAATCGACGACGC
TTGCAGGCCCGTAACATTCTCCTGTCGACGGCCACCTTAGCGGCAGCTGA
TTCTGTACAAAAAGAGCAGCAGCAAGTAGAAAATTCAAATCTTGGGGACA
CGAATGTCGCGGCGTCTGCGGAGGCCTCGTCGTGCTCTCCATCCCCCCGT
TCCCCGTCTTCCCCTCCACATCCTACTGTGCTTGCCAGCATGGCTCTCAC
TGCGTCTGCTACCTTGACAACGGGGGGCAACACTCTGCGTAAACGGTATC
ATGCATCTCGGGGCGACAACGACGACATCGTCGAGAAAACGACGACCAAA
AATGGATATGAGCGATGCAGCAGCCCGTCGACGGGCCAAGATTCTGGCAC
AAAGGGGTGACCGGATGAAGCTGGTGTCGGGCTTGGGGGCCGCGATTGCA
CAG

Synonyms

Publications