jgi.p|Nanoce1779_2|584455, mRNA_3074 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584455
Unique Name	mRNA_3074
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1477
Alignment location	scaffold_7:605304..606900 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584541
Track	FilteredModels2
ProteinId	584455

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:605304..606900 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584455	gene_3074	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584455	mRNA_3074-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3074	CDS_3074	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:605304..606900+
coding sequence from alignment at scaffold_7:605304..606900+

mRNA sequence

>mRNA_3074 ID=mRNA_3074|Name=jgi.p|Nanoce1779_2|584455|organism=Nannochloropsis oceanica|type=mRNA|length=1477bp
GGCTCGGAACGCTGCATTCGATTTCTTTCTCACAATACGAAAGCATAACC
GACACAACCGTAGAAGTCATGCCAAAGCGCAAGCAGGAGGAGGAAAGGGA
GACGAATGGACAGGAGCAGGAGCAGGAGGGCAACGAGCTGTCTGAAGAGA
AGGAAGGGGTGTTGATGAAGAAGCAGGAGGGGAATCGGGAGGAGGAGCAG
CAGCAGCTCGAGGAGAGTGACGCTGACCAGCACGAGCGGCCGCAGAAGAA
GGCGGCGAAGATGAAGGCTGCAGAGGTCGTGTTACAGACGAAACGTTGTG
CCTTGGCCCGGAATCCAGCTCTCGGCCACCCGTGCTCTTTTAAGGTTCTT
TCTTGGAATGTGAACGGCCTTAATGGCATCCTGAATGGAAAGCATGCCAC
GCTCAACGGCAACAAGACTACCAACGTGTTGCAAGAACTGGTAGCCCTTG
AAGGAGATGTGGATGTGTTGTTCCTCCAAGAGACTAAGCTGCAAGAGAGC
AAATGTTCTGGCTTTAGCAAAATTCTTCCCGGATACGTGGCATATTGGTC
CTGTTCAAAAGTCAAGAAGGGGTATTCGGGGGTGGCTGCGTTTGTAAAGG
AGGTGTATGTGCGCGGAAATGGTGATGGCGGTGGGGATGCAAAAATGGGA
CCGATAGGGAAGCAACGGACACTGTCAAGCTTTTTTCGGGCCGGCTTCAA
GAAGAAGGGAACCGCGACGGAAGAGGGGGCCAAGGGCGCTGAGACATCCC
CGTGTGATGCTGCTACCGCTGATACTGCTTCTTCCACTTCGACTTCCTCG
TTCGAAGTCTTGAATGTGAAGTACGGCTATTGCGGAGACAAAGACGAGGA
CGAGGAAGGTCGTGTGGTGACCCTGGAATTTGCATGCTTTTGGTTGGTGG
GGGTGTACGTAGCGAATAGTGGGATGAGGCTTGAGCGGCTGCAGCATCGC
CTCAAGACTTTCAATCCACGTTTTCAAGAGTTTCTTTCCGGCCTGAATGA
CACTAAGCCTGTATTAGTCATTGGAGATTTTAATGTGGCCCCGTTGGATA
TAGATTGCTACAATGCAGGGGCTAAGCATTTGGTGAAGGTGCCAGGGTTG
ACACCGGAGGAGCGGGAGGCGCATGCTACGTGGTTAGGTACCGGATGGAA
GGATACATTCAGGGCCTTTCATCCGGAAGCCAAGGGGCAGTACACCTACT
GGAACGTCAAGACAAATGCAAGGCCTGACAACAAGGGACTGCGACTAGAC
TTTGCCATAATTGCTTCGCAAGACCTGGAAGGAGGAAGAGGAGTCAAGGT
GCATGACTCGTTCATTCTGCACGAAGCGACGGTGGGCTATTCGGATCATG
CGCCCATTGGCGTTGTCCTGGAGGTGGAGGGGGGAGGGAGGGAAGAGATG
TCTTCGTGACGAAGAGATGAACAAATTGTTCAATAAACGTGCCAAAATGG
TCATATCTGGCACGATAAACGAACAAA

protein sequence of jgi.p|Nanoce1779_2|584455

>mRNA_3074-protein ID=mRNA_3074-protein|Name=jgi.p|Nanoce1779_2|584455|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp
MPKRKQEEERETNGQEQEQEGNELSEEKEGVLMKKQEGNREEEQQQLEES
DADQHERPQKKAAKMKAAEVVLQTKRCALARNPALGHPCSFKVLSWNVNG
LNGILNGKHATLNGNKTTNVLQELVALEGDVDVLFLQETKLQESKCSGFS
KILPGYVAYWSCSKVKKGYSGVAAFVKEVYVRGNGDGGGDAKMGPIGKQR
TLSSFFRAGFKKKGTATEEGAKGAETSPCDAATADTASSTSTSSFEVLNV
KYGYCGDKDEDEEGRVVTLEFACFWLVGVYVANSGMRLERLQHRLKTFNP
RFQEFLSGLNDTKPVLVIGDFNVAPLDIDCYNAGAKHLVKVPGLTPEERE
AHATWLGTGWKDTFRAFHPEAKGQYTYWNVKTNARPDNKGLRLDFAIIAS
QDLEGGRGVKVHDSFILHEATVGYSDHAPIGVVLEVEGGGREEMSS*

mRNA from alignment at scaffold_7:605304..606900+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3074 ID=mRNA_3074|Name=jgi.p|Nanoce1779_2|584455|organism=Nannochloropsis oceanica|type=mRNA|length=1597bp|location=Sequence derived from alignment at scaffold_7:605304..606900+ (Nannochloropsis oceanica)
GGCTCGGAACGCTGCATTCGATTTCTTTCTCACAATACGAAAGCATAACC
GACACAACCGTAGAAGTCATGCCAAAGCGCAAGCAGGAGGAGGAAAGGGA
GACGAATGGACAGGAGCAGGAGCAGGAGGGCAACGAGCTGTCTGAAGAGA
AGGAAGGGGTGTTGATGAAGAAGCAGGAGGGGAATCGGGAGGAGGAGCAG
CAGCAGCTCGAGGAGAGTGACGCTGACCAGCACGAGCGGCCGCAGAAGAA
GGCGGCGAAGATGAAGGCTGCAGAGGTCGTGTTACAGACGAAACGTTGTG
CCTTGGCCCGGAATCCAGCTCTCGGCCACCCGTGCTCTTTTAAGGTTCTT
TCTTGGAATGTGAACGGCCTTAATGGCATCCTGAATGGAAAGCATGCCAC
GCTCAACGGCAACAAGACTACCAACGTGTTGCAAGAACTGGTAGCCCTTG
AAGGAGATGTGGATGTGTTGTTCCTCCAAGAGACTAAGCTGCAAGAGAGC
AAATGTTCTGGCTTTAGCAAAATTCTTCCCGGATACGTGGCATATTGGTC
CTGTTCAAAAGTCAAGAAGGGGTATTCGGGGGTGGCTGCGTTTGTAAAGG
AGGTGTATGTGCGCGGAAATGGTGATGGCGGTGGGGATGCAAAAATGGGA
CCGATAGGGAAGCAACGGACACTGTCAAGCTTTTTTCGGGCCGGCTTCAA
GAAGAAGGGAACCGCGACGGAAGAGGGGGCCAAGGGCGCTGAGACATCCC
CGTGTGATGCTGCTACCGCTGATACTGCTTCTTCCACTTCGACTTCCTCG
TTCGAAGTCTTGAATGTGAAGTACGGCTATTGCGGAGACAAAGACGAGGA
CGAGGAAGGTCGTGTGGTGACCCTGGAATTTGCATGCTTTTGGTTGGTGG
GGGTGTACGTAGCGAATAGTGGGATGAGGCTTGAGCGGCTGCAGCATCGC
CTCAAGACTTTCAATCCACGTTTTCAAGAGTTTCTTTCCGGCCTGAATGA
CACTAAGCCTGTATTAGTCATTGGAGATTTTAATGTGGCCCCGTTGGATA
TAGATTGCTACAATGCAGGGGCTAAGCATTTGGTGAAGGTGCCAGGGTTG
ACACCGGAGGAGCGGGAGGCGCATGCTACGTGGTTAGGTACCGGATGGAA
GGATACATTCAGGTTCGTTTTCAGATTTCTACGAAAAAAAAAAATCTTGA
CTTCCTTTTCTCTTCGCCTCACCTATCAATTTTACATTCTCGTCTTCATG
TATCTCATCATTTACATCCGCCGTTTCTTCAGGGCCTTTCATCCGGAAGC
CAAGGGGCAGTACACCTACTGGAACGTCAAGACAAATGCAAGGCCTGACA
ACAAGGGACTGCGACTAGACTTTGCCATAATTGCTTCGCAAGACCTGGAA
GGAGGAAGAGGAGTCAAGGTGCATGACTCGTTCATTCTGCACGAAGCGAC
GGTGGGCTATTCGGATCATGCGCCCATTGGCGTTGTCCTGGAGGTGGAGG
GGGGAGGGAGGGAAGAGATGTCTTCGTGACGAAGAGATGAACAAATTGTT
CAATAAACGTGCCAAAATGGTCATATCTGGCACGATAAACGAACAAA

Coding sequence (CDS) from alignment at scaffold_7:605304..606900+

>mRNA_3074 ID=mRNA_3074|Name=jgi.p|Nanoce1779_2|584455|organism=Nannochloropsis oceanica|type=CDS|length=2682bp|location=Sequence derived from alignment at scaffold_7:605304..606900+ (Nannochloropsis oceanica)
ATGCCAAAGCGCAAGCAGGAGGAGGAAAGGGAGACGAATGGACAGGAGCA
GGAGCAGGAGGGCAACGAGCTGTCTGAAGAGAAGGAAGGGGTGTTGATGA
AGAAGCAGGAGGGGAATCGGGAGGAGGAGCAGCAGCAGCTCGAGGAGAGT
GACGCTGACCAGCACGAGCGGCCGCAGAAGAAGGCGGCGAAGATGAAGGC
TGCAGAGGTCGTGTTACAGACGAAACGTTGTGCCTTGGCCCGGAATCCAG
CTCTCGGCCACCCGTGCTCTTTTAAGGTTCTTTCTTGGAATGTGAACGGC
CTTAATGGCATCCTGAATGGAAAGCATGCCACGCTCAACGGCAACAAGAC
TACCAACGTGTTGCAAGAACTGGTAGCCCTTGAAGGAGATGTGGATGTGT
TGTTCCTCCAAGAGACTAAGCTGCAAGAGAGCAAATGTTCTGGCTTTAGC
AAAATTCTTCCCGGATACGTGGCATATTGGTCCTGTTCAAAAGTCAAGAA
GGGGTATTCGGGGGTGGCTGCGTTTGTAAAGGAGGTGTATGTGCGCGGAA
ATGGTGATGGCGGTGGGGATGCAAAAATGGGACCGATAGGGAAGCAACGG
ACACTGTCAAGCTTTTTTCGGGCCGGCTTCAAGAAGAAGGGAACCGCGAC
GGAAGAGGGGGCCAAGGGCGCTGAGACATCCCCGTGTGATGCTGCTACCG
CTGATACTGCTTCTTCCACTTCGACTTCCTCGTTCGAAGTCTTGAATGTG
AAGTACGGCTATTGCGGAGACAAAGACGAGGACGAGGAAGGTCGTGTGGT
GACCCTGGAATTTGCATGCTTTTGGTTGGTGGGGGTGTACGTAGCGAATA
GTGGGATGAGGCTTGAGCGGCTGCAGCATCGCCTCAAGACTTTCAATCCA
CGTTTTCAAGAGTTTCTTTCCGGCCTGAATGACACTAAGCCTGTATTAGT
CATTGGAGATTTTAATGTGGCCCCGTTGGATATAGATTGCTACAATGCAG
GGGCTAAGCATTTGGTGAAGGTGCCAGGGTTGACACCGGAGGAGCGGGAG
GCGCATGCTACGTGGTTAGGTACCGGATGGAAGGATACATTCAGGGCCTT
TCATCCGGAAGCCAAGGGGCAGTACACCTACTGGAACGTCAAGACAAATG
CAAGGCCTGACAACAAGGGACTGCGACTAGACTTTGCCATAATTGCTTCG
CAAGACCTGGAAGGAGGAAGAGGAGTCAAGGTGCATGACTCGTTCATTCT
GCACGAAGCGACGGTGGGCTATTCGGATCATGCGCCCATTGGCGTTGTCC
TGGAGGTGGAGGGGGGAGGGAGGGAAGAGATGTCTTCGTGAATGCCAAAG
CGCAAGCAGGAGGAGGAAAGGGAGACGAATGGACAGGAGCAGGAGCAGGA
GGGCAACGAGCTGTCTGAAGAGAAGGAAGGGGTGTTGATGAAGAAGCAGG
AGGGGAATCGGGAGGAGGAGCAGCAGCAGCTCGAGGAGAGTGACGCTGAC
CAGCACGAGCGGCCGCAGAAGAAGGCGGCGAAGATGAAGGCTGCAGAGGT
CGTGTTACAGACGAAACGTTGTGCCTTGGCCCGGAATCCAGCTCTCGGCC
ACCCGTGCTCTTTTAAGGTTCTTTCTTGGAATGTGAACGGCCTTAATGGC
ATCCTGAATGGAAAGCATGCCACGCTCAACGGCAACAAGACTACCAACGT
GTTGCAAGAACTGGTAGCCCTTGAAGGAGATGTGGATGTGTTGTTCCTCC
AAGAGACTAAGCTGCAAGAGAGCAAATGTTCTGGCTTTAGCAAAATTCTT
CCCGGATACGTGGCATATTGGTCCTGTTCAAAAGTCAAGAAGGGGTATTC
GGGGGTGGCTGCGTTTGTAAAGGAGGTGTATGTGCGCGGAAATGGTGATG
GCGGTGGGGATGCAAAAATGGGACCGATAGGGAAGCAACGGACACTGTCA
AGCTTTTTTCGGGCCGGCTTCAAGAAGAAGGGAACCGCGACGGAAGAGGG
GGCCAAGGGCGCTGAGACATCCCCGTGTGATGCTGCTACCGCTGATACTG
CTTCTTCCACTTCGACTTCCTCGTTCGAAGTCTTGAATGTGAAGTACGGC
TATTGCGGAGACAAAGACGAGGACGAGGAAGGTCGTGTGGTGACCCTGGA
ATTTGCATGCTTTTGGTTGGTGGGGGTGTACGTAGCGAATAGTGGGATGA
GGCTTGAGCGGCTGCAGCATCGCCTCAAGACTTTCAATCCACGTTTTCAA
GAGTTTCTTTCCGGCCTGAATGACACTAAGCCTGTATTAGTCATTGGAGA
TTTTAATGTGGCCCCGTTGGATATAGATTGCTACAATGCAGGGGCTAAGC
ATTTGGTGAAGGTGCCAGGGTTGACACCGGAGGAGCGGGAGGCGCATGCT
ACGTGGTTAGGTACCGGATGGAAGGATACATTCAGGGCCTTTCATCCGGA
AGCCAAGGGGCAGTACACCTACTGGAACGTCAAGACAAATGCAAGGCCTG
ACAACAAGGGACTGCGACTAGACTTTGCCATAATTGCTTCGCAAGACCTG
GAAGGAGGAAGAGGAGTCAAGGTGCATGACTCGTTCATTCTGCACGAAGC
GACGGTGGGCTATTCGGATCATGCGCCCATTGGCGTTGTCCTGGAGGTGG
AGGGGGGAGGGAGGGAAGAGATGTCTTCGTGA

Synonyms

Publications