jgi.p|Nanoce1779_2|584454, mRNA_3073 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584454
Unique NamemRNA_3073
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1069
Alignment locationscaffold_7:604260..605328 -

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Properties
Property NameValue
TranscriptId584540
TrackFilteredModels2
ProteinId584454
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:604260..605328 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584454gene_3073Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584454mRNA_3073-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3073CDS_3073Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3073 ID=mRNA_3073|Name=jgi.p|Nanoce1779_2|584454|organism=Nannochloropsis oceanica|type=mRNA|length=1069bp
GAAATCGAATGCAGCGTTCCGAGCCCTACTAACGCCACACTCCCCATCCC
CATCCTTCTCTCTCCACATCTCCACCATCCCACAGCCACAATCATCTGAG
ACATGGCCCCGACCACCACCACCGACACTTTGCCCTTACTCCTAATTCGG
TTGCCCGGACTCGAAGCCGTGGCGCTTATGCAGCAAGCCTGCACACTCTC
TTCTACCGGCGACGAAGCATTGGCGTCTTACAAAGGCGAGAAAGACGTGA
CTCCAGCCCAGTTGCGAGCGGCTCATGCGGTGCTGAAGGAGGTATTCCAG
GAGCGGGAGGATGCCTTTAATGAGACGGTCATACAAGGCGCCCGCCCTGT
GTTTCCTCGGCACGTGCAGCGGAAGGAGGACCTTGCGACTCAGGCCACGG
CGAAGGAAGGCTGGCGAAAGAATCTCCAAGCCAAACACCAGAAGCAAGAG
TACGACCGCATGGTCAAGAATGTGCACTGGGGCGGGGCACGAAAGCCAGA
CCCAGAAACCCGTCCATTCTACCAGGTCTCCATTGCATTCAACATGCTAG
TGGCTATGATCACGGCGGGCTTTATGGGTTGGTATGTGGCGGGCTCGTTT
ATAACTAAAGACGCACACCGTTTGATGGTGGGAATTGTAACGGCCATGAC
GATGCTTGTGTTGGAAATGATGTTGTACATCATCCGAACGACAGAGGTAG
AGCGGTATGCCCCCAAGCGGGAACGGAACGAGCAGTTGGGCCAGCAAGGC
AAGACCATTCCTTGCGGCTACGCTGACGATCTCACGTTCAGAAAACCGAC
GGCCAAAAAGAACACCAGCAATAGATCTATCGTGGGCCCACCAAACTCGG
GAGGAGTCAAACAAAAGGTGTTATGAGCGCGGTAAGAGAAACAGATTGTA
CCATAGAATCCACAGTGAGAAAGGGTGAGGACAGACACGGCGAATCCACT
CGGAGAAAAAAGACACTCGAAAACGAAGACCTTTTATAGATTGCATGGAG
AGCATCATTTCGTTTAATCAGCGATGGAATAAAGCACAGATTTTGTAGAA
CAAAATCAAAGGAGCAGTG
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protein sequence of jgi.p|Nanoce1779_2|584454

>mRNA_3073-protein ID=mRNA_3073-protein|Name=jgi.p|Nanoce1779_2|584454|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MAPTTTTDTLPLLLIRLPGLEAVALMQQACTLSSTGDEALASYKGEKDVT
PAQLRAAHAVLKEVFQEREDAFNETVIQGARPVFPRHVQRKEDLATQATA
KEGWRKNLQAKHQKQEYDRMVKNVHWGGARKPDPETRPFYQVSIAFNMLV
AMITAGFMGWYVAGSFITKDAHRLMVGIVTAMTMLVLEMMLYIIRTTEVE
RYAPKRERNEQLGQQGKTIPCGYADDLTFRKPTAKKNTSNRSIVGPPNSG
GVKQKVL*
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mRNA from alignment at scaffold_7:604260..605328-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3073 ID=mRNA_3073|Name=jgi.p|Nanoce1779_2|584454|organism=Nannochloropsis oceanica|type=mRNA|length=1069bp|location=Sequence derived from alignment at scaffold_7:604260..605328- (Nannochloropsis oceanica)
GAAATCGAATGCAGCGTTCCGAGCCCTACTAACGCCACACTCCCCATCCC
CATCCTTCTCTCTCCACATCTCCACCATCCCACAGCCACAATCATCTGAG
ACATGGCCCCGACCACCACCACCGACACTTTGCCCTTACTCCTAATTCGG
TTGCCCGGACTCGAAGCCGTGGCGCTTATGCAGCAAGCCTGCACACTCTC
TTCTACCGGCGACGAAGCATTGGCGTCTTACAAAGGCGAGAAAGACGTGA
CTCCAGCCCAGTTGCGAGCGGCTCATGCGGTGCTGAAGGAGGTATTCCAG
GAGCGGGAGGATGCCTTTAATGAGACGGTCATACAAGGCGCCCGCCCTGT
GTTTCCTCGGCACGTGCAGCGGAAGGAGGACCTTGCGACTCAGGCCACGG
CGAAGGAAGGCTGGCGAAAGAATCTCCAAGCCAAACACCAGAAGCAAGAG
TACGACCGCATGGTCAAGAATGTGCACTGGGGCGGGGCACGAAAGCCAGA
CCCAGAAACCCGTCCATTCTACCAGGTCTCCATTGCATTCAACATGCTAG
TGGCTATGATCACGGCGGGCTTTATGGGTTGGTATGTGGCGGGCTCGTTT
ATAACTAAAGACGCACACCGTTTGATGGTGGGAATTGTAACGGCCATGAC
GATGCTTGTGTTGGAAATGATGTTGTACATCATCCGAACGACAGAGGTAG
AGCGGTATGCCCCCAAGCGGGAACGGAACGAGCAGTTGGGCCAGCAAGGC
AAGACCATTCCTTGCGGCTACGCTGACGATCTCACGTTCAGAAAACCGAC
GGCCAAAAAGAACACCAGCAATAGATCTATCGTGGGCCCACCAAACTCGG
GAGGAGTCAAACAAAAGGTGTTATGAGCGCGGTAAGAGAAACAGATTGTA
CCATAGAATCCACAGTGAGAAAGGGTGAGGACAGACACGGCGAATCCACT
CGGAGAAAAAAGACACTCGAAAACGAAGACCTTTTATAGATTGCATGGAG
AGCATCATTTCGTTTAATCAGCGATGGAATAAAGCACAGATTTTGTAGAA
CAAAATCAAAGGAGCAGTG
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Coding sequence (CDS) from alignment at scaffold_7:604260..605328-

>mRNA_3073 ID=mRNA_3073|Name=jgi.p|Nanoce1779_2|584454|organism=Nannochloropsis oceanica|type=CDS|length=774bp|location=Sequence derived from alignment at scaffold_7:604260..605328- (Nannochloropsis oceanica)
ATGGCCCCGACCACCACCACCGACACTTTGCCCTTACTCCTAATTCGGTT
GCCCGGACTCGAAGCCGTGGCGCTTATGCAGCAAGCCTGCACACTCTCTT
CTACCGGCGACGAAGCATTGGCGTCTTACAAAGGCGAGAAAGACGTGACT
CCAGCCCAGTTGCGAGCGGCTCATGCGGTGCTGAAGGAGGTATTCCAGGA
GCGGGAGGATGCCTTTAATGAGACGGTCATACAAGGCGCCCGCCCTGTGT
TTCCTCGGCACGTGCAGCGGAAGGAGGACCTTGCGACTCAGGCCACGGCG
AAGGAAGGCTGGCGAAAGAATCTCCAAGCCAAACACCAGAAGCAAGAGTA
CGACCGCATGGTCAAGAATGTGCACTGGGGCGGGGCACGAAAGCCAGACC
CAGAAACCCGTCCATTCTACCAGGTCTCCATTGCATTCAACATGCTAGTG
GCTATGATCACGGCGGGCTTTATGGGTTGGTATGTGGCGGGCTCGTTTAT
AACTAAAGACGCACACCGTTTGATGGTGGGAATTGTAACGGCCATGACGA
TGCTTGTGTTGGAAATGATGTTGTACATCATCCGAACGACAGAGGTAGAG
CGGTATGCCCCCAAGCGGGAACGGAACGAGCAGTTGGGCCAGCAAGGCAA
GACCATTCCTTGCGGCTACGCTGACGATCTCACGTTCAGAAAACCGACGG
CCAAAAAGAACACCAGCAATAGATCTATCGTGGGCCCACCAAACTCGGGA
GGAGTCAAACAAAAGGTGTTATGA
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Synonyms
Publications