jgi.p|Nanoce1779_2|576879, mRNA_307 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576879
Unique Name	mRNA_307
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1799
Alignment location	scaffold_3:753585..755383 +

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Properties


Property Name	Value
TranscriptId	576965
Track	FilteredModels2
ProteinId	576879

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:753585..755383 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576879	gene_307	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576879	mRNA_307-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_307	CDS_307	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:753585..755383+
coding sequence from alignment at scaffold_3:753585..755383+

mRNA sequence

>mRNA_307 ID=mRNA_307|Name=jgi.p|Nanoce1779_2|576879|organism=Nannochloropsis oceanica|type=mRNA|length=1799bp
ACAGGAGTCTAGGACGCAAACGGAGCGCACCTGACAATCAACACGAGCAA
AGAGTGGCAATATATATCTTATATTACGAGGAGAAAACCCCTCGGTGCAG
CCATGTCCCCCCGAACGCTGCAGCCAGCCAAAGCTTGGGTGCGGCGGCGG
GCAACGGTGATGGCGTACGGGGCCCTGATGCTTGTGGCGATGGTCTTAGT
GATAAGACACGACGGCTGGGTGGGCAAGGAACAGGCTAGAAGCCGGAGAG
GATCGCTTGGAGCGCGGGCATTGGCCTCCCAGAAGAAAGTGCGCTATGAA
AGGTTGCGGGATCATTCAGCACCACGGTCCACTTTGAGGGACGCCAGCAC
GGCCTCGACGTTTGGGGTGGCCGCGGACCCTTCTCAACTTCCCCCCCATG
AAGTATTTCCCGCTCCCTGCGACTGTCGACATTGCGATGTCCTACCTCCA
CCTCCACCAGTTCCCCCATCTTCGTCCGTCTTTCCCTTTCACGCCTTTCC
CCCCCCTACGACCCGAGATGGCCGCATAGCTAGCAGTCCCACCGCCAGCA
GCACCGCCAGCAGCACAAGCAACCCAACCCATCCTCCCAGCCCCCCACCC
TGGCTGGGCGTAGGTCTCCCACCCCGTGATCTTCAAGACACGCATGTGCG
TATCATAATCCGCGTGCACCACTTACAAGAAGCCGCCACGCGTTCCCTTA
TATGGGCAATGCGTGCTCAGCCTGAGGCCGCAAAATTTCAAGCTGGCGCT
CCGAAATTTACTGTCGACTTTGCCTTGGTAGCCACTGAAGCACAAGGCCT
GCCCGTCGTGCAACGTATTGCGCAAGATGAATGGGAGCGCACAAGCAGCC
GGGGCATTAATATCGCTCCTAGCCCTGATGTATTTGTCGCTGATACCACC
GGGTCTTTTTATGCCTTGGCCTCCAACCGCTCCGCGCCCTACCGGTGCAG
CGAGGCGGACAAAGCTGAGTATCAAAACAAAGGAGGAGAAAACTACGTGC
GTTTGCATTGCGCCTACGACAACCATGCTTACTATCAAGCAACTGACGTT
GGGGTGTTGGACGTTTTGAGAGGCTGCCCCTGGTGTACCCACGTGTTGGT
CACTAATTCAGATAACTCTTATCACCCAGATTTTTTGCTACACACCCTGT
CCTCAGACGCTGACCTTGTCACGACCGATTTTGTCGATCACGGCGAGAGA
ATGGTCACGGCCGATTGGCGATGGGGAAAAGTAGACTTAGGAGGGGTGCT
TGCCTCGAGGAAGGTAGTGATGAAGACTGGTGGGTTCATCGCGTCCTTGC
CACCGGGAGCGGGGCCACAGGAGACACATGATAATGATTATTGGTTTGTA
CATCGAGGATTGGATTTGGGGGCGACTACGGCAGTGGTAGGAAAATTATT
GTTTTTCCACAACTAGTGAGGACGGAAAAAAAAAGAAAAAGATCAAGAAA
GTACCAATAATGTAGGGTAGGAAATTAAGACACAGAGACAAGAAAAGAGC
AAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTCCGGCAACAG
GAAGCCAGAAAAGTTCAATAATTTTTGAAGAGGCTGATGATGAAAGCAGA
AAGCAAGCAAGGTGGGCAGATCGATCAATTTGAAAAATGTTTAAATTGCA
CCTAGAGGTAGAAACGATGGCGGGAGCACCAAGAGGAGTAAGAGAAGAAA
GCGGCATATACACTTGCATGTAATACTTGCGTGTCCCAGGATGTGTTTGT
GTGATATGAGCGTCCCCCCAAAGAACAAAAAAACCTAGACGTTTGAAAA

protein sequence of jgi.p|Nanoce1779_2|576879

>mRNA_307-protein ID=mRNA_307-protein|Name=jgi.p|Nanoce1779_2|576879|organism=Nannochloropsis oceanica|type=polypeptide|length=438bp
MSPRTLQPAKAWVRRRATVMAYGALMLVAMVLVIRHDGWVGKEQARSRRG
SLGARALASQKKVRYERLRDHSAPRSTLRDASTASTFGVAADPSQLPPHE
VFPAPCDCRHCDVLPPPPPVPPSSSVFPFHAFPPPTTRDGRIASSPTASS
TASSTSNPTHPPSPPPWLGVGLPPRDLQDTHVRIIIRVHHLQEAATRSLI
WAMRAQPEAAKFQAGAPKFTVDFALVATEAQGLPVVQRIAQDEWERTSSR
GINIAPSPDVFVADTTGSFYALASNRSAPYRCSEADKAEYQNKGGENYVR
LHCAYDNHAYYQATDVGVLDVLRGCPWCTHVLVTNSDNSYHPDFLLHTLS
SDADLVTTDFVDHGERMVTADWRWGKVDLGGVLASRKVVMKTGGFIASLP
PGAGPQETHDNDYWFVHRGLDLGATTAVVGKLLFFHN*

mRNA from alignment at scaffold_3:753585..755383+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_307 ID=mRNA_307|Name=jgi.p|Nanoce1779_2|576879|organism=Nannochloropsis oceanica|type=mRNA|length=1799bp|location=Sequence derived from alignment at scaffold_3:753585..755383+ (Nannochloropsis oceanica)
ACAGGAGTCTAGGACGCAAACGGAGCGCACCTGACAATCAACACGAGCAA
AGAGTGGCAATATATATCTTATATTACGAGGAGAAAACCCCTCGGTGCAG
CCATGTCCCCCCGAACGCTGCAGCCAGCCAAAGCTTGGGTGCGGCGGCGG
GCAACGGTGATGGCGTACGGGGCCCTGATGCTTGTGGCGATGGTCTTAGT
GATAAGACACGACGGCTGGGTGGGCAAGGAACAGGCTAGAAGCCGGAGAG
GATCGCTTGGAGCGCGGGCATTGGCCTCCCAGAAGAAAGTGCGCTATGAA
AGGTTGCGGGATCATTCAGCACCACGGTCCACTTTGAGGGACGCCAGCAC
GGCCTCGACGTTTGGGGTGGCCGCGGACCCTTCTCAACTTCCCCCCCATG
AAGTATTTCCCGCTCCCTGCGACTGTCGACATTGCGATGTCCTACCTCCA
CCTCCACCAGTTCCCCCATCTTCGTCCGTCTTTCCCTTTCACGCCTTTCC
CCCCCCTACGACCCGAGATGGCCGCATAGCTAGCAGTCCCACCGCCAGCA
GCACCGCCAGCAGCACAAGCAACCCAACCCATCCTCCCAGCCCCCCACCC
TGGCTGGGCGTAGGTCTCCCACCCCGTGATCTTCAAGACACGCATGTGCG
TATCATAATCCGCGTGCACCACTTACAAGAAGCCGCCACGCGTTCCCTTA
TATGGGCAATGCGTGCTCAGCCTGAGGCCGCAAAATTTCAAGCTGGCGCT
CCGAAATTTACTGTCGACTTTGCCTTGGTAGCCACTGAAGCACAAGGCCT
GCCCGTCGTGCAACGTATTGCGCAAGATGAATGGGAGCGCACAAGCAGCC
GGGGCATTAATATCGCTCCTAGCCCTGATGTATTTGTCGCTGATACCACC
GGGTCTTTTTATGCCTTGGCCTCCAACCGCTCCGCGCCCTACCGGTGCAG
CGAGGCGGACAAAGCTGAGTATCAAAACAAAGGAGGAGAAAACTACGTGC
GTTTGCATTGCGCCTACGACAACCATGCTTACTATCAAGCAACTGACGTT
GGGGTGTTGGACGTTTTGAGAGGCTGCCCCTGGTGTACCCACGTGTTGGT
CACTAATTCAGATAACTCTTATCACCCAGATTTTTTGCTACACACCCTGT
CCTCAGACGCTGACCTTGTCACGACCGATTTTGTCGATCACGGCGAGAGA
ATGGTCACGGCCGATTGGCGATGGGGAAAAGTAGACTTAGGAGGGGTGCT
TGCCTCGAGGAAGGTAGTGATGAAGACTGGTGGGTTCATCGCGTCCTTGC
CACCGGGAGCGGGGCCACAGGAGACACATGATAATGATTATTGGTTTGTA
CATCGAGGATTGGATTTGGGGGCGACTACGGCAGTGGTAGGAAAATTATT
GTTTTTCCACAACTAGTGAGGACGGAAAAAAAAAGAAAAAGATCAAGAAA
GTACCAATAATGTAGGGTAGGAAATTAAGACACAGAGACAAGAAAAGAGC
AAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTCCGGCAACAG
GAAGCCAGAAAAGTTCAATAATTTTTGAAGAGGCTGATGATGAAAGCAGA
AAGCAAGCAAGGTGGGCAGATCGATCAATTTGAAAAATGTTTAAATTGCA
CCTAGAGGTAGAAACGATGGCGGGAGCACCAAGAGGAGTAAGAGAAGAAA
GCGGCATATACACTTGCATGTAATACTTGCGTGTCCCAGGATGTGTTTGT
GTGATATGAGCGTCCCCCCAAAGAACAAAAAAACCTAGACGTTTGAAAA

Coding sequence (CDS) from alignment at scaffold_3:753585..755383+

>mRNA_307 ID=mRNA_307|Name=jgi.p|Nanoce1779_2|576879|organism=Nannochloropsis oceanica|type=CDS|length=1314bp|location=Sequence derived from alignment at scaffold_3:753585..755383+ (Nannochloropsis oceanica)
ATGTCCCCCCGAACGCTGCAGCCAGCCAAAGCTTGGGTGCGGCGGCGGGC
AACGGTGATGGCGTACGGGGCCCTGATGCTTGTGGCGATGGTCTTAGTGA
TAAGACACGACGGCTGGGTGGGCAAGGAACAGGCTAGAAGCCGGAGAGGA
TCGCTTGGAGCGCGGGCATTGGCCTCCCAGAAGAAAGTGCGCTATGAAAG
GTTGCGGGATCATTCAGCACCACGGTCCACTTTGAGGGACGCCAGCACGG
CCTCGACGTTTGGGGTGGCCGCGGACCCTTCTCAACTTCCCCCCCATGAA
GTATTTCCCGCTCCCTGCGACTGTCGACATTGCGATGTCCTACCTCCACC
TCCACCAGTTCCCCCATCTTCGTCCGTCTTTCCCTTTCACGCCTTTCCCC
CCCCTACGACCCGAGATGGCCGCATAGCTAGCAGTCCCACCGCCAGCAGC
ACCGCCAGCAGCACAAGCAACCCAACCCATCCTCCCAGCCCCCCACCCTG
GCTGGGCGTAGGTCTCCCACCCCGTGATCTTCAAGACACGCATGTGCGTA
TCATAATCCGCGTGCACCACTTACAAGAAGCCGCCACGCGTTCCCTTATA
TGGGCAATGCGTGCTCAGCCTGAGGCCGCAAAATTTCAAGCTGGCGCTCC
GAAATTTACTGTCGACTTTGCCTTGGTAGCCACTGAAGCACAAGGCCTGC
CCGTCGTGCAACGTATTGCGCAAGATGAATGGGAGCGCACAAGCAGCCGG
GGCATTAATATCGCTCCTAGCCCTGATGTATTTGTCGCTGATACCACCGG
GTCTTTTTATGCCTTGGCCTCCAACCGCTCCGCGCCCTACCGGTGCAGCG
AGGCGGACAAAGCTGAGTATCAAAACAAAGGAGGAGAAAACTACGTGCGT
TTGCATTGCGCCTACGACAACCATGCTTACTATCAAGCAACTGACGTTGG
GGTGTTGGACGTTTTGAGAGGCTGCCCCTGGTGTACCCACGTGTTGGTCA
CTAATTCAGATAACTCTTATCACCCAGATTTTTTGCTACACACCCTGTCC
TCAGACGCTGACCTTGTCACGACCGATTTTGTCGATCACGGCGAGAGAAT
GGTCACGGCCGATTGGCGATGGGGAAAAGTAGACTTAGGAGGGGTGCTTG
CCTCGAGGAAGGTAGTGATGAAGACTGGTGGGTTCATCGCGTCCTTGCCA
CCGGGAGCGGGGCCACAGGAGACACATGATAATGATTATTGGTTTGTACA
TCGAGGATTGGATTTGGGGGCGACTACGGCAGTGGTAGGAAAATTATTGT
TTTTCCACAACTAG

Synonyms

Publications