jgi.p|Nanoce1779_2|584439, mRNA_3067 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584439
Unique Name	mRNA_3067
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2500
Alignment location	scaffold_7:588508..591007 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584525
Track	FilteredModels2
ProteinId	584439

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:588508..591007 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584439	gene_3067	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584439	mRNA_3067-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3067	CDS_3067	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:588508..591007-
coding sequence from alignment at scaffold_7:588508..591007-

mRNA sequence

>mRNA_3067 ID=mRNA_3067|Name=jgi.p|Nanoce1779_2|584439|organism=Nannochloropsis oceanica|type=mRNA|length=2500bp
CAGACAGCTCCCCGTTTTTATCCCTGTTCAATAGGCACACTAAAAGCGAT
GCTTCGCATCTCCCGCCGACTCCTGCACGCGCCGCCATGGGCAGGCTGTA
CCCTGACACCGCCAGTACCTCGCCGCACTGCGGCACCGCACATAGGTCTG
TCTTTCAATGGCTTCTCGACTTTAAAGACAGGGGCTACGCCTCCGAATTT
GATTCGGAACGTGGCCATTATTGCTCATATTGACCACGGGAAGACTACCA
TCTGCGATCGGCTGATGGGGAGCAGTGCCGTGACCGCGGAGCGAGTCATG
GACAGCATGTCCCTGGAGAAACAGCGAGGTATCACCATAATGAGCAAATA
TACGCGCGTGGATTTTCAAGGCCATGTCCTTAACGTAGTGGACACGCCGG
GCCACGCCGACTTTGGTGGGGAGGTCGAGCGCGTGCTGGACATGTGCAGC
GGTTGCTGCCTCATTGTATGCGGAACTGAGGGTCCCATGGCGCAAAGTAA
GTACGTGCTCAGCAAGGCAATTGAGCATAATTTAAAGCCTATCGTGGTCA
TAAACAAGGTCGACCGTGAAGGAGCGCGGCCTCACGAGGTGGAGAGCGAG
GTGCTGGACCTTTTCATTTCCTTGGGGGCTCCGGATGAACTGCTAGATTA
CCCTGTACTTTTTGCCAGCGCCCGGGAAGGGTGGGCAGTGCGAGACATGG
ACGATACGGATCACTCAAGAGGTATGGCACCCTTACTCGAAGCCATTGTT
GAGACGGTGCCGGCTCCATGTGGACCCGAGGCCCTGGCGGAGCCCTTTAC
GTTCGCGGTCAACAGCCTGCAGACCGATAATTTTGTGGGGCGAGTGTGCC
TGGGCAAGGTGCACACAGGCCGTGTTAAGATCGGCGATCCCATCAAGGCC
CTTTTTAGAGAGGAGGATGGCAAGGTCTTGCAGGAAGGCAAGGTCACAAA
GCTCTTTTGCCAGCGCGGCATGGACAAGCAAGAGGTGCAACAGGGCAACG
CTGGAGACATTCTGTGGTTGGCGGGTGTCGAAGCGAATGTGGCCGACACG
ATTGCGGCCCCGGAAGTCATGGCCCCTTTGCAGACACAGAAGATGGACCC
ACCGACCCTGGCCATCACCTTCTCAGCCAACGACTCGCCTTTGGCCGGGA
AGGAGGGCAAGTACGTTACGGGAAGCCACGTCATCAATCGCCTTCACAAG
GAAGTCGAAAACAACGTCTCCATAACTCTGGTCCCATCCTCAGAGCCCGA
GTCTATCGAAGTACATGGCCGTGGGGAGCTGCAGCTAGGCATCATAATCG
AGACTATGCGCCGGGAAGGCTTTGAGCTCTGCGTGTCGCCTCCCAAAGTC
CTGACGAAGATGTGTCCCACCACGGGCAAGACGTTGGAGCCTGTGGAAGA
GGTGACGGTGGACGTGGACCAGGAGCTGAGTGGGGTGGTGGTAGAGAAAT
TAAGTGCCCGAAAGGGTCATTTGGTGCATTTCGGTGACCACCGAGGCAAG
TCCCGCTTGATTTTTCATGTACCGTCGCGTGGCTTACTCGGGTTTATGAA
CGAAATCAAGACGGACACCCGGGGTTCGGCCGTCGTGACACGATTATTTT
TGGAGCACAAGGCATCAGTAGGTCAAATTGATGCCCTATTTCGAGGTAAG
CTCATCAGTATGGAACGCGGGGCTGCCACAGCGTACGCACTTAATATGTT
GGAGGAGCGAGGGGTACTCTTTGTGCAGCCGGGGGAGGAGGTTTACCCGG
GTATGATTATTGGCGAGCATAATCGGCCCGTAGACCTGGACGTGAATCCT
ACCAAAGGGAAAAAGCTGAGCAATATTCGGACTGTGAGCGCCGACGAGGC
CATTCGATTGACCCCGCCCGTCGTGCGCGTTTTGGAAGAGTATTTGGCTT
ACATGAACGAGGACGAAAAGTTGGAGGTGACCCCCCTAAAGATGCGCTTG
CGAAAACGAGAACTGGATCCCGGCGTCCGGGCCCGGAAAGCTAAGAGCGG
CGGGAAGAGGTAAAAATTGGTGGATAGAAATTTTGAAGGGAAACTAAACA
AATCTTCAAATTAATAATGCAAGATTTATTCTTTAAGTTAGGAGTGTTCT
GCGTTACGTTTTGCTTTATGCTAATTTAAGAGCATGCAAAAGCGTAGAGG
CAATGACAGAAGGGATAAATACACGTCATTTTTCGATCACTAACTGTCCA
TACTGGACCTCTGGTCTCTTTGAGTGTGGTAGTGTGGGAAAAACGCATTC
CAATTTTTAAACCGCCGACGGTTAAACAATTGCTATATTATTGGCCAACG
GCTCCACGAGTGACAAAAGAAGAATCAACAAAATGAGATATTGTATCGGC
TCGTTTCCCCTACAAGTCAGCACCCACAAATTTGTTGTAACGCAGTAATT
AAAAATCTCTCACTGTGTTTTGCAGGGAGGTCGTCTTTGACAATGCAGAC
CATGTCACAGCTAAGAGCCCGCATCCCTTACAACTCTTCGATTCCCATTC

protein sequence of jgi.p|Nanoce1779_2|584439

>mRNA_3067-protein ID=mRNA_3067-protein|Name=jgi.p|Nanoce1779_2|584439|organism=Nannochloropsis oceanica|type=polypeptide|length=655bp
MLRISRRLLHAPPWAGCTLTPPVPRRTAAPHIGLSFNGFSTLKTGATPPN
LIRNVAIIAHIDHGKTTICDRLMGSSAVTAERVMDSMSLEKQRGITIMSK
YTRVDFQGHVLNVVDTPGHADFGGEVERVLDMCSGCCLIVCGTEGPMAQS
KYVLSKAIEHNLKPIVVINKVDREGARPHEVESEVLDLFISLGAPDELLD
YPVLFASAREGWAVRDMDDTDHSRGMAPLLEAIVETVPAPCGPEALAEPF
TFAVNSLQTDNFVGRVCLGKVHTGRVKIGDPIKALFREEDGKVLQEGKVT
KLFCQRGMDKQEVQQGNAGDILWLAGVEANVADTIAAPEVMAPLQTQKMD
PPTLAITFSANDSPLAGKEGKYVTGSHVINRLHKEVENNVSITLVPSSEP
ESIEVHGRGELQLGIIIETMRREGFELCVSPPKVLTKMCPTTGKTLEPVE
EVTVDVDQELSGVVVEKLSARKGHLVHFGDHRGKSRLIFHVPSRGLLGFM
NEIKTDTRGSAVVTRLFLEHKASVGQIDALFRGKLISMERGAATAYALNM
LEERGVLFVQPGEEVYPGMIIGEHNRPVDLDVNPTKGKKLSNIRTVSADE
AIRLTPPVVRVLEEYLAYMNEDEKLEVTPLKMRLRKRELDPGVRARKAKS
GGKR*

mRNA from alignment at scaffold_7:588508..591007-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3067 ID=mRNA_3067|Name=jgi.p|Nanoce1779_2|584439|organism=Nannochloropsis oceanica|type=mRNA|length=2500bp|location=Sequence derived from alignment at scaffold_7:588508..591007- (Nannochloropsis oceanica)
CAGACAGCTCCCCGTTTTTATCCCTGTTCAATAGGCACACTAAAAGCGAT
GCTTCGCATCTCCCGCCGACTCCTGCACGCGCCGCCATGGGCAGGCTGTA
CCCTGACACCGCCAGTACCTCGCCGCACTGCGGCACCGCACATAGGTCTG
TCTTTCAATGGCTTCTCGACTTTAAAGACAGGGGCTACGCCTCCGAATTT
GATTCGGAACGTGGCCATTATTGCTCATATTGACCACGGGAAGACTACCA
TCTGCGATCGGCTGATGGGGAGCAGTGCCGTGACCGCGGAGCGAGTCATG
GACAGCATGTCCCTGGAGAAACAGCGAGGTATCACCATAATGAGCAAATA
TACGCGCGTGGATTTTCAAGGCCATGTCCTTAACGTAGTGGACACGCCGG
GCCACGCCGACTTTGGTGGGGAGGTCGAGCGCGTGCTGGACATGTGCAGC
GGTTGCTGCCTCATTGTATGCGGAACTGAGGGTCCCATGGCGCAAAGTAA
GTACGTGCTCAGCAAGGCAATTGAGCATAATTTAAAGCCTATCGTGGTCA
TAAACAAGGTCGACCGTGAAGGAGCGCGGCCTCACGAGGTGGAGAGCGAG
GTGCTGGACCTTTTCATTTCCTTGGGGGCTCCGGATGAACTGCTAGATTA
CCCTGTACTTTTTGCCAGCGCCCGGGAAGGGTGGGCAGTGCGAGACATGG
ACGATACGGATCACTCAAGAGGTATGGCACCCTTACTCGAAGCCATTGTT
GAGACGGTGCCGGCTCCATGTGGACCCGAGGCCCTGGCGGAGCCCTTTAC
GTTCGCGGTCAACAGCCTGCAGACCGATAATTTTGTGGGGCGAGTGTGCC
TGGGCAAGGTGCACACAGGCCGTGTTAAGATCGGCGATCCCATCAAGGCC
CTTTTTAGAGAGGAGGATGGCAAGGTCTTGCAGGAAGGCAAGGTCACAAA
GCTCTTTTGCCAGCGCGGCATGGACAAGCAAGAGGTGCAACAGGGCAACG
CTGGAGACATTCTGTGGTTGGCGGGTGTCGAAGCGAATGTGGCCGACACG
ATTGCGGCCCCGGAAGTCATGGCCCCTTTGCAGACACAGAAGATGGACCC
ACCGACCCTGGCCATCACCTTCTCAGCCAACGACTCGCCTTTGGCCGGGA
AGGAGGGCAAGTACGTTACGGGAAGCCACGTCATCAATCGCCTTCACAAG
GAAGTCGAAAACAACGTCTCCATAACTCTGGTCCCATCCTCAGAGCCCGA
GTCTATCGAAGTACATGGCCGTGGGGAGCTGCAGCTAGGCATCATAATCG
AGACTATGCGCCGGGAAGGCTTTGAGCTCTGCGTGTCGCCTCCCAAAGTC
CTGACGAAGATGTGTCCCACCACGGGCAAGACGTTGGAGCCTGTGGAAGA
GGTGACGGTGGACGTGGACCAGGAGCTGAGTGGGGTGGTGGTAGAGAAAT
TAAGTGCCCGAAAGGGTCATTTGGTGCATTTCGGTGACCACCGAGGCAAG
TCCCGCTTGATTTTTCATGTACCGTCGCGTGGCTTACTCGGGTTTATGAA
CGAAATCAAGACGGACACCCGGGGTTCGGCCGTCGTGACACGATTATTTT
TGGAGCACAAGGCATCAGTAGGTCAAATTGATGCCCTATTTCGAGGTAAG
CTCATCAGTATGGAACGCGGGGCTGCCACAGCGTACGCACTTAATATGTT
GGAGGAGCGAGGGGTACTCTTTGTGCAGCCGGGGGAGGAGGTTTACCCGG
GTATGATTATTGGCGAGCATAATCGGCCCGTAGACCTGGACGTGAATCCT
ACCAAAGGGAAAAAGCTGAGCAATATTCGGACTGTGAGCGCCGACGAGGC
CATTCGATTGACCCCGCCCGTCGTGCGCGTTTTGGAAGAGTATTTGGCTT
ACATGAACGAGGACGAAAAGTTGGAGGTGACCCCCCTAAAGATGCGCTTG
CGAAAACGAGAACTGGATCCCGGCGTCCGGGCCCGGAAAGCTAAGAGCGG
CGGGAAGAGGTAAAAATTGGTGGATAGAAATTTTGAAGGGAAACTAAACA
AATCTTCAAATTAATAATGCAAGATTTATTCTTTAAGTTAGGAGTGTTCT
GCGTTACGTTTTGCTTTATGCTAATTTAAGAGCATGCAAAAGCGTAGAGG
CAATGACAGAAGGGATAAATACACGTCATTTTTCGATCACTAACTGTCCA
TACTGGACCTCTGGTCTCTTTGAGTGTGGTAGTGTGGGAAAAACGCATTC
CAATTTTTAAACCGCCGACGGTTAAACAATTGCTATATTATTGGCCAACG
GCTCCACGAGTGACAAAAGAAGAATCAACAAAATGAGATATTGTATCGGC
TCGTTTCCCCTACAAGTCAGCACCCACAAATTTGTTGTAACGCAGTAATT
AAAAATCTCTCACTGTGTTTTGCAGGGAGGTCGTCTTTGACAATGCAGAC
CATGTCACAGCTAAGAGCCCGCATCCCTTACAACTCTTCGATTCCCATTC

Coding sequence (CDS) from alignment at scaffold_7:588508..591007-

>mRNA_3067 ID=mRNA_3067|Name=jgi.p|Nanoce1779_2|584439|organism=Nannochloropsis oceanica|type=CDS|length=1965bp|location=Sequence derived from alignment at scaffold_7:588508..591007- (Nannochloropsis oceanica)
ATGCTTCGCATCTCCCGCCGACTCCTGCACGCGCCGCCATGGGCAGGCTG
TACCCTGACACCGCCAGTACCTCGCCGCACTGCGGCACCGCACATAGGTC
TGTCTTTCAATGGCTTCTCGACTTTAAAGACAGGGGCTACGCCTCCGAAT
TTGATTCGGAACGTGGCCATTATTGCTCATATTGACCACGGGAAGACTAC
CATCTGCGATCGGCTGATGGGGAGCAGTGCCGTGACCGCGGAGCGAGTCA
TGGACAGCATGTCCCTGGAGAAACAGCGAGGTATCACCATAATGAGCAAA
TATACGCGCGTGGATTTTCAAGGCCATGTCCTTAACGTAGTGGACACGCC
GGGCCACGCCGACTTTGGTGGGGAGGTCGAGCGCGTGCTGGACATGTGCA
GCGGTTGCTGCCTCATTGTATGCGGAACTGAGGGTCCCATGGCGCAAAGT
AAGTACGTGCTCAGCAAGGCAATTGAGCATAATTTAAAGCCTATCGTGGT
CATAAACAAGGTCGACCGTGAAGGAGCGCGGCCTCACGAGGTGGAGAGCG
AGGTGCTGGACCTTTTCATTTCCTTGGGGGCTCCGGATGAACTGCTAGAT
TACCCTGTACTTTTTGCCAGCGCCCGGGAAGGGTGGGCAGTGCGAGACAT
GGACGATACGGATCACTCAAGAGGTATGGCACCCTTACTCGAAGCCATTG
TTGAGACGGTGCCGGCTCCATGTGGACCCGAGGCCCTGGCGGAGCCCTTT
ACGTTCGCGGTCAACAGCCTGCAGACCGATAATTTTGTGGGGCGAGTGTG
CCTGGGCAAGGTGCACACAGGCCGTGTTAAGATCGGCGATCCCATCAAGG
CCCTTTTTAGAGAGGAGGATGGCAAGGTCTTGCAGGAAGGCAAGGTCACA
AAGCTCTTTTGCCAGCGCGGCATGGACAAGCAAGAGGTGCAACAGGGCAA
CGCTGGAGACATTCTGTGGTTGGCGGGTGTCGAAGCGAATGTGGCCGACA
CGATTGCGGCCCCGGAAGTCATGGCCCCTTTGCAGACACAGAAGATGGAC
CCACCGACCCTGGCCATCACCTTCTCAGCCAACGACTCGCCTTTGGCCGG
GAAGGAGGGCAAGTACGTTACGGGAAGCCACGTCATCAATCGCCTTCACA
AGGAAGTCGAAAACAACGTCTCCATAACTCTGGTCCCATCCTCAGAGCCC
GAGTCTATCGAAGTACATGGCCGTGGGGAGCTGCAGCTAGGCATCATAAT
CGAGACTATGCGCCGGGAAGGCTTTGAGCTCTGCGTGTCGCCTCCCAAAG
TCCTGACGAAGATGTGTCCCACCACGGGCAAGACGTTGGAGCCTGTGGAA
GAGGTGACGGTGGACGTGGACCAGGAGCTGAGTGGGGTGGTGGTAGAGAA
ATTAAGTGCCCGAAAGGGTCATTTGGTGCATTTCGGTGACCACCGAGGCA
AGTCCCGCTTGATTTTTCATGTACCGTCGCGTGGCTTACTCGGGTTTATG
AACGAAATCAAGACGGACACCCGGGGTTCGGCCGTCGTGACACGATTATT
TTTGGAGCACAAGGCATCAGTAGGTCAAATTGATGCCCTATTTCGAGGTA
AGCTCATCAGTATGGAACGCGGGGCTGCCACAGCGTACGCACTTAATATG
TTGGAGGAGCGAGGGGTACTCTTTGTGCAGCCGGGGGAGGAGGTTTACCC
GGGTATGATTATTGGCGAGCATAATCGGCCCGTAGACCTGGACGTGAATC
CTACCAAAGGGAAAAAGCTGAGCAATATTCGGACTGTGAGCGCCGACGAG
GCCATTCGATTGACCCCGCCCGTCGTGCGCGTTTTGGAAGAGTATTTGGC
TTACATGAACGAGGACGAAAAGTTGGAGGTGACCCCCCTAAAGATGCGCT
TGCGAAAACGAGAACTGGATCCCGGCGTCCGGGCCCGGAAAGCTAAGAGC
GGCGGGAAGAGGTAA

Synonyms

Publications