jgi.p|Nanoce1779_2|669869, mRNA_3066 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|669869
Unique NamemRNA_3066
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1344
Alignment locationscaffold_7:587009..588507 -

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Properties
Property NameValue
TranscriptId669955
TrackFilteredModels2
ProteinId669869
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:587009..588507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669869gene_3066Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669869mRNA_3066-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3066CDS_3066Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3066 ID=mRNA_3066|Name=jgi.p|Nanoce1779_2|669869|organism=Nannochloropsis oceanica|type=mRNA|length=1344bp
CAACATACAGGGTGTCACACACACGCCCTTTACGAAGCCAATTAGCATGC
GTATTTTCTCCATACTCCTCGCCGCAGTCACGATTCTGGCCCCCGTCGCT
GTACTAGGTGAGATCGAGACGAATGCAGTGAAGGACACCTCTGTATCGGA
CGTCCTCCATGATGAGGACTTGGAAGGAGTCGCAGCGAGAAAGCTCGAGT
TTCTGAACCTAGAGGTTGATCAGAAGGGATGCTATCTCCTGACGGGTCCT
GAATCTGGATTGTTATTATTGCTTTGCGAGGACGATGCCGGGGCACGCAA
GCGTTATACCGATGAGGGTATCCTTGTTGACTTAGCCGAATCCCCTGAAG
AAACGAACGAGGACATGTACTCTTGGGTCAATGGCACCATCACGAACCTT
GGAGAAATTGCTATCTGTAATGTGGCGTTTGCTTCACGGGACACTGATCT
TACCACAGATGCCCTTGACGTCGTGCCTATCAATCTTCCCACGACCGCAC
TGGACGAATCGCTGTTTGATTCCGTGGACCTAGCCCCCGGGGAGTCGATC
GACTTTGCTTACTTTTTGCCTTTCAATGCCGCTCGCAACGCGCCAGCCTT
CGTAGGCTTATCCAAATCTCTTCATGCCTGCTCGGAAGCCAAGGAGAAGT
TCGTGCCCGAGCTGCCGGAGTGGGATGAAGTAGAGACTACTGGTGAGGCA
GTAGACAAGCTGGTTGATGCCGCAAACATTGTCGTTGATGCCACCCAAGA
GACGACCGGCGAGATGCTGGACACGACGCAGCAGTTCACACAGGGATTTG
TGGACGGTACTCAGGATAAGCTTGATGCTACCATAGATTCCTTGCAGGCC
GTGTCGAAGCCACCCGAGCTGGCAGATACCACTACTACCATCCCCACGAA
AACTCAGGACAAATCTGTTGCAGAAGCACTTGAGGAGCCCAAGGCGGCCA
ATACCAATGCCCTAAAGGTGAAGGTCGCGGCCAAAACCGATGAATCTAAC
TCCTCAGTTACCGAAATTCCCATCAAGGAAGCACAAAATGAGGCAGAGAC
TACGTCTCCTGCTGGCACGCGATCTGCTTCGGGCTCTATCATCCTGTTGG
GAACGATATTTGTTTTGTCCGTCTCAGCGTTTTTTGCATGAGTGCATAGC
GTGAGCGAAATGTGCTATGTACGAAGGCAAATTTCATTCGGATTTTGTAG
GTGCCGTCGTTGTTATTTATTTTTCATAAGTATGAGTACAGCGAGAGGAC
ATGACCGAGAGGGATATGGGCCGCCATGGAGATGTAAAAGTACCGTGTAA
ATCAAGCAAAAACAAAGAAGAGAACCAAAAAACCAGAACCAAAC
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protein sequence of jgi.p|Nanoce1779_2|669869

>mRNA_3066-protein ID=mRNA_3066-protein|Name=jgi.p|Nanoce1779_2|669869|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MRIFSILLAAVTILAPVAVLGEIETNAVKDTSVSDVLHDEDLEGVAARKL
EFLNLEVDQKGCYLLTGPESGLLLLLCEDDAGARKRYTDEGILVDLAESP
EETNEDMYSWVNGTITNLGEIAICNVAFASRDTDLTTDALDVVPINLPTT
ALDESLFDSVDLAPGESIDFAYFLPFNAARNAPAFVGLSKSLHACSEAKE
KFVPELPEWDEVETTGEAVDKLVDAANIVVDATQETTGEMLDTTQQFTQG
FVDGTQDKLDATIDSLQAVSKPPELADTTTTIPTKTQDKSVAEALEEPKA
ANTNALKVKVAAKTDESNSSVTEIPIKEAQNEAETTSPAGTRSASGSIIL
LGTIFVLSVSAFFA*
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mRNA from alignment at scaffold_7:587009..588507-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3066 ID=mRNA_3066|Name=jgi.p|Nanoce1779_2|669869|organism=Nannochloropsis oceanica|type=mRNA|length=1499bp|location=Sequence derived from alignment at scaffold_7:587009..588507- (Nannochloropsis oceanica)
CAACATACAGGGTGTCACACACACGCCCTTTACGAAGCCAATTAGCATGC
GTATTTTCTCCATACTCCTCGCCGCAGTCACGATTCTGGCCCCCGTCGCT
GTACTAGGTGAGATCGAGACGAATGCAGTGAAGGACACCTCTGTATCGGA
CGTCCTCCATGATGAGGACTTGGAAGGAGTCGCAGCGAGAAAGCTCGAGT
TTCTGAACCTAGAGGTTGATCAGAAGGGATGCTATCTCCTGACGGGTCCT
GAATCTGGATTGTTATTATTGCTTTGCGAGGACGATGCCGGGGCACGCAA
GCGTTATACCGATGAGGGTGAGTGCTAGAAGTTGCGAATCTTGGTATTGC
ACCATGCACATCAAAAGCCCTCTTGAGAGGAGAACGTGCAACGAGTTAAA
AAGTATCCCCTCCTGCATGAGGTTGCATACATGTACTGTGATACTCATGT
CATGCTATTCCCATACGCACAGGTATCCTTGTTGACTTAGCCGAATCCCC
TGAAGAAACGAACGAGGACATGTACTCTTGGGTCAATGGCACCATCACGA
ACCTTGGAGAAATTGCTATCTGTAATGTGGCGTTTGCTTCACGGGACACT
GATCTTACCACAGATGCCCTTGACGTCGTGCCTATCAATCTTCCCACGAC
CGCACTGGACGAATCGCTGTTTGATTCCGTGGACCTAGCCCCCGGGGAGT
CGATCGACTTTGCTTACTTTTTGCCTTTCAATGCCGCTCGCAACGCGCCA
GCCTTCGTAGGCTTATCCAAATCTCTTCATGCCTGCTCGGAAGCCAAGGA
GAAGTTCGTGCCCGAGCTGCCGGAGTGGGATGAAGTAGAGACTACTGGTG
AGGCAGTAGACAAGCTGGTTGATGCCGCAAACATTGTCGTTGATGCCACC
CAAGAGACGACCGGCGAGATGCTGGACACGACGCAGCAGTTCACACAGGG
ATTTGTGGACGGTACTCAGGATAAGCTTGATGCTACCATAGATTCCTTGC
AGGCCGTGTCGAAGCCACCCGAGCTGGCAGATACCACTACTACCATCCCC
ACGAAAACTCAGGACAAATCTGTTGCAGAAGCACTTGAGGAGCCCAAGGC
GGCCAATACCAATGCCCTAAAGGTGAAGGTCGCGGCCAAAACCGATGAAT
CTAACTCCTCAGTTACCGAAATTCCCATCAAGGAAGCACAAAATGAGGCA
GAGACTACGTCTCCTGCTGGCACGCGATCTGCTTCGGGCTCTATCATCCT
GTTGGGAACGATATTTGTTTTGTCCGTCTCAGCGTTTTTTGCATGAGTGC
ATAGCGTGAGCGAAATGTGCTATGTACGAAGGCAAATTTCATTCGGATTT
TGTAGGTGCCGTCGTTGTTATTTATTTTTCATAAGTATGAGTACAGCGAG
AGGACATGACCGAGAGGGATATGGGCCGCCATGGAGATGTAAAAGTACCG
TGTAAATCAAGCAAAAACAAAGAAGAGAACCAAAAAACCAGAACCAAAC
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Coding sequence (CDS) from alignment at scaffold_7:587009..588507-

>mRNA_3066 ID=mRNA_3066|Name=jgi.p|Nanoce1779_2|669869|organism=Nannochloropsis oceanica|type=CDS|length=2190bp|location=Sequence derived from alignment at scaffold_7:587009..588507- (Nannochloropsis oceanica)
GTATCCTTGTTGACTTAGCCGAATCCCCTGAAGAAACGAACGAGGACATG
TACTCTTGGGTCAATGGCACCATCACGAACCTTGGAGAAATTGCTATCTG
TAATGTGGCGTTTGCTTCACGGGACACTGATCTTACCACAGATGCCCTTG
ACGTCGTGCCTATCAATCTTCCCACGACCGCACTGGACGAATCGCTGTTT
GATTCCGTGGACCTAGCCCCCGGGGAGTCGATCGACTTTGCTTACTTTTT
GCCTTTCAATGCCGCTCGCAACGCGCCAGCCTTCGTAGGCTTATCCAAAT
CTCTTCATGCCTGCTCGGAAGCCAAGGAGAAGTTCGTGCCCGAGCTGCCG
GAGTGGGATGAAGTAGAGACTACTGGTGAGGCAGTAGACAAGCTGGTTGA
TGCCGCAAACATTGTCGTTGATGCCACCCAAGAGACGACCGGCGAGATGC
TGGACACGACGCAGCAGTTCACACAGGGATTTGTGGACGGTACTCAGGAT
AAGCTTGATGCTACCATAGATTCCTTGCAGGCCGTGTCGAAGCCACCCGA
GCTGGCAGATACCACTACTACCATCCCCACGAAAACTCAGGACAAATCTG
TTGCAGAAGCACTTGAGGAGCCCAAGGCGGCCAATACCAATGCCCTAAAG
GTGAAGGTCGCGGCCAAAACCGATGAATCTAACTCCTCAGTTACCGAAAT
TCCCATCAAGGAAGCACAAAATGAGGCAGAGACTACGTCTCCTGCTGGCA
CGCGATCTGCTTCGGGCTCTATCATCCTGTTGGGAACGATATTTGTTTTG
TCCGTCTCAGCGTTTTTTGCATGAATGCGTATTTTCTCCATACTCCTCGC
CGCAGTCACGATTCTGGCCCCCGTCGCTGTACTAGGTGAGATCGAGACGA
ATGCAGTGAAGGACACCTCTGTATCGGACGTCCTCCATGATGAGGACTTG
GAAGGAGTCGCAGCGAGAAAGCTCGAGTTTCTGAACCTAGAGGTTGATCA
GAAGGGATGCTATCTCCTGACGGGTCCTGAATCTGGATTGTTATTATTGC
TTTGCGAGGACGATGCCGGGGCACGCAAGCGTTATACCGATGAGGGTATC
CTTGTTGACTTAGCCGAATCCCCTGAAGAAACGAACGAGGACATGTACTC
TTGGGTCAATGGCACCATCACGAACCTTGGAGAAATTGCTATCTGTAATG
TGGCGTTTGCTTCACGGGACACTGATCTTACCACAGATGCCCTTGACGTC
GTGCCTATCAATCTTCCCACGACCGCACTGGACGAATCGCTGTTTGATTC
CGTGGACCTAGCCCCCGGGGAGTCGATCGACTTTGCTTACTTTTTGCCTT
TCAATGCCGCTCGCAACGCGCCAGCCTTCGTAGGCTTATCCAAATCTCTT
CATGCCTGCTCGGAAGCCAAGGAGAAGTTCGTGCCCGAGCTGCCGGAGTG
GGATGAAGTAGAGACTACTGGTGAGGCAGTAGACAAGCTGGTTGATGCCG
CAAACATTGTCGTTGATGCCACCCAAGAGACGACCGGCGAGATGCTGGAC
ACGACGCAGCAGTTCACACAGGGATTTGTGGACGGTACTCAGGATAAGCT
TGATGCTACCATAGATTCCTTGCAGGCCGTGTCGAAGCCACCCGAGCTGG
CAGATACCACTACTACCATCCCCACGAAAACTCAGGACAAATCTGTTGCA
GAAGCACTTGAGGAGCCCAAGGCGGCCAATACCAATGCCCTAAAGGTGAA
GGTCGCGGCCAAAACCGATGAATCTAACTCCTCAGTTACCGAAATTCCCA
TCAAGGAAGCACAAAATGAGGCAGAGACTACGTCTCCTGCTGGCACGCGA
TCTGCTTCGGGCTCTATCATCCTGTTGGGAACGATATTTGTTTTGTCCGT
CTCAGCGTTTTTTGCATGAATGCGTATTTTCTCCATACTCCTCGCCGCAG
TCACGATTCTGGCCCCCGTCGCTGTACTAGGTGAGATCGAGACGAATGCA
GTGAAGGACACCTCTGTATCGGACGTCCTCCATGATGAGGACTTGGAAGG
AGTCGCAGCGAGAAAGCTCGAGTTTCTGAACCTAGAGGTTGATCAGAAGG
GATGCTATCTCCTGACGGGTCCTGAATCTGGATTGTTATTATTGCTTTGC
GAGGACGATGCCGGGGCACGCAAGCGTTATACCGATGAGG
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Synonyms
Publications