jgi.p|Nanoce1779_2|584433, mRNA_3065 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|584433
Unique Name	mRNA_3065
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1530
Alignment location	scaffold_7:585226..587002 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584519
Track	FilteredModels2
ProteinId	584433

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:585226..587002 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584433	gene_3065	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|584433	mRNA_3065-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3065	CDS_3065	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:585226..587002+
coding sequence from alignment at scaffold_7:585226..587002+

mRNA sequence

>mRNA_3065 ID=mRNA_3065|Name=jgi.p|Nanoce1779_2|584433|organism=Nannochloropsis oceanica|type=mRNA|length=1530bp
ACAGGCACTTGCACGACCTGTCTGCTCTCTATTGTCGCCTGCATCACGTG
ACTCCAAGTGCCTATTATTACAATGGCAACTGACGACCTTCCACGCCTGC
GTGTCGTGAGCCTTGCTGAAGTGGATGACCTGGCCAAGCTCAATGAGCCC
GTGGAACCCTTGGCCCGCCATCAGGCCATGGAGATCATCAACGACATCAA
GACAAACGGCAAGACCGCCCTTCTTCAACAAGCCCTCAGACTCGGCGACA
TCAAATCACTACAAGACCCCATTATCCTTGGTCGGGCCGATCTCGAAAAG
GCATGGTTGTCCCTCACCGACGGACAACGTGAAGTGCTCCAACGAACACG
AGAGCGGATCGAAGCCTTTGCCAAAGCCCAACGCAGCGCCATCCAAGACG
TCTCAATTTCCATTCCCGGGGGATCAGCAGGGCACACCATTGCGCCCATG
GCCGTCGCAGGTTGTTACGCCCCCGGAGGTCGATACCCTCTCCCTTCCTC
TGTGCTGATGACAGCGGTAACTGCCAAAGCAGCAGGCGTGACGAAGGTGT
GGGTGGCCTCCCCCCGTCCTTCTGCCGTGACACTCGGCGCTGCGTTCATT
GCGGAAGCAGATGCCTTTTTGGCAGTCGGTGGGGCACAGGCTGTGGCAGC
ACTGGCTTATGGAGTGGATGGTGTGGATGCGAGTGATATAGTTGTTGGGC
CGGGGAACAAATGGGTCACTGCGGCGAAGAGTCTCATTTCGGGCGTTTGT
GCGATTGACATGCTGGCAGGGCCTTCAGAGGTGTTGGTCATCGCGGATGC
GACAGCGGACCCGCAGACCATCGCGGCAGATTTGCTAGCGCAGGCGGAGC
ATGATGTAGAGGCAAGGCCTATTCTGGTGGCGACCTCGAGGAATGTCATC
GATCAAGTGAATGATGCCCTGGTGCAGCAACTCTCCATCCTGCCCACGGG
GGAAACAGCCCGCCATGCCGTCTTAAAGGGGTTTGCGGTGGCGGTTAATA
GCGTAGAGGAGTGCATTTTAGTGTCCGATAAAATTGCCCCTGAGCATCTG
GAGATCCAGACGGCTGACGCCAAAGCCGTCGCTTTCCGCTGTAAGAACTA
CGGAGCTGTGTTCATTGGTCATGGAGCGGCGGAGGTCTTGGGGGATTATG
GTGCGGGTCCAAACCATGTGTTGCCGACAGGTGGCACCGCTAAATATACA
GGGGGTTTAAGTGTCTTTACGTTCTTGAGGGTGCGGACGTGGATGAGTAT
GGACGACCTGCATGGGGGGCAGGTGGTGGTGAAGGACGCGGTGGAGCTGG
CACGCTTGGAAGGGCTTGAGGGCCATGCACGGGCGGCAGAGAAGAGGCTT
TTGCCGGCGTAAGGTTGATGAAGAAGTCATGATTAAAGGAAGTATAACGT
TGTGCTCGAAATGTTAGATGCGTGTGAATGATGAGTATCTTCATGAGTAG
CTGGATGAGTGGGAGAATGGGAGATTGGTGGAAAGAAAAAGTTGTAGAAG
AGGAAGGGAAATAAAACGTTCTTTGTGGTT

protein sequence of jgi.p|Nanoce1779_2|584433

>mRNA_3065-protein ID=mRNA_3065-protein|Name=jgi.p|Nanoce1779_2|584433|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp
MATDDLPRLRVVSLAEVDDLAKLNEPVEPLARHQAMEIINDIKTNGKTAL
LQQALRLGDIKSLQDPIILGRADLEKAWLSLTDGQREVLQRTRERIEAFA
KAQRSAIQDVSISIPGGSAGHTIAPMAVAGCYAPGGRYPLPSSVLMTAVT
AKAAGVTKVWVASPRPSAVTLGAAFIAEADAFLAVGGAQAVAALAYGVDG
VDASDIVVGPGNKWVTAAKSLISGVCAIDMLAGPSEVLVIADATADPQTI
AADLLAQAEHDVEARPILVATSRNVIDQVNDALVQQLSILPTGETARHAV
LKGFAVAVNSVEECILVSDKIAPEHLEIQTADAKAVAFRCKNYGAVFIGH
GAAEVLGDYGAGPNHVLPTGGTAKYTGGLSVFTFLRVRTWMSMDDLHGGQ
VVVKDAVELARLEGLEGHARAAEKRLLPA*

mRNA from alignment at scaffold_7:585226..587002+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3065 ID=mRNA_3065|Name=jgi.p|Nanoce1779_2|584433|organism=Nannochloropsis oceanica|type=mRNA|length=1777bp|location=Sequence derived from alignment at scaffold_7:585226..587002+ (Nannochloropsis oceanica)
ACAGGCACTTGCACGACCTGTCTGCTCTCTATTGTCGCCTGCATCACGTG
ACTCCAAGTGCCTATTATTACAATGGCAACTGACGACCTTCCACGCCTGC
GTGTCGTGAGCCTTGCTGAAGTGGATGACCTGGCCAAGCTCAATGAGCCC
GTGGAACCCTTGGCCCGCCATCAGGCCATGGAGATCATCAACGACATCAA
GGTAAGTTTGCAGGGGTCATTTATGGCTTTTCACTCGCGCCTACACGTGA
CAGGTGACGTGACCAGCTTGGACACAGGCATGGCACGAGCATGGAGACGA
TCCTCCTCAACCTACGAGGCTACTCGCACTCGACGTCCCGCGCTCTTTGC
ATGGTTGTGCGAGGGGGAACGCCACTTACTGCATGGCAGTAGACAGCATA
TCCTCATCCCATCCCATATCACTTATTCTGCGACCACACCAAACCCAGAC
AAACGGCAAGACCGCCCTTCTTCAACAAGCCCTCAGACTCGGCGACATCA
AATCACTACAAGACCCCATTATCCTTGGTCGGGCCGATCTCGAAAAGGCA
TGGTTGTCCCTCACCGACGGACAACGTGAAGTGCTCCAACGAACACGAGA
GCGGATCGAAGCCTTTGCCAAAGCCCAACGCAGCGCCATCCAAGACGTCT
CAATTTCCATTCCCGGGGGATCAGCAGGGCACACCATTGCGCCCATGGCC
GTCGCAGGTTGTTACGCCCCCGGAGGTCGATACCCTCTCCCTTCCTCTGT
GCTGATGACAGCGGTAACTGCCAAAGCAGCAGGCGTGACGAAGGTGTGGG
TGGCCTCCCCCCGTCCTTCTGCCGTGACACTCGGCGCTGCGTTCATTGCG
GAAGCAGATGCCTTTTTGGCAGTCGGTGGGGCACAGGCTGTGGCAGCACT
GGCTTATGGAGTGGATGGTGTGGATGCGAGTGATATAGTTGTTGGGCCGG
GGAACAAATGGGTCACTGCGGCGAAGAGTCTCATTTCGGGCGTTTGTGCG
ATTGACATGCTGGCAGGGCCTTCAGAGGTGTTGGTCATCGCGGATGCGAC
AGCGGACCCGCAGACCATCGCGGCAGATTTGCTAGCGCAGGCGGAGCATG
ATGTAGAGGCAAGGCCTATTCTGGTGGCGACCTCGAGGAATGTCATCGAT
CAAGTGAATGATGCCCTGGTGCAGCAACTCTCCATCCTGCCCACGGGGGA
AACAGCCCGCCATGCCGTCTTAAAGGGGTTTGCGGTGGCGGTTAATAGCG
TAGAGGAGTGCATTTTAGTGTCCGATAAAATTGCCCCTGAGCATCTGGAG
ATCCAGACGGCTGACGCCAAAGCCGTCGCTTTCCGCTGTAAGAACTACGG
AGCTGTGTTCATTGGTCATGGAGCGGCGGAGGTCTTGGGGGATTATGGTG
CGGGTCCAAACCATGTGTTGCCGACAGGTGGCACCGCTAAATATACAGGG
GGTTTAAGTGTCTTTACGTTCTTGAGGGTGCGGACGTGGATGAGTATGGA
CGACCTGCATGGGGGGCAGGTGGTGGTGAAGGACGCGGTGGAGCTGGCAC
GCTTGGAAGGGCTTGAGGGCCATGCACGGGCGGCAGAGAAGAGGCTTTTG
CCGGCGTAAGGTTGATGAAGAAGTCATGATTAAAGGAAGTATAACGTTGT
GCTCGAAATGTTAGATGCGTGTGAATGATGAGTATCTTCATGAGTAGCTG
GATGAGTGGGAGAATGGGAGATTGGTGGAAAGAAAAAGTTGTAGAAGAGG
AAGGGAAATAAAACGTTCTTTGTGGTT

Coding sequence (CDS) from alignment at scaffold_7:585226..587002+

>mRNA_3065 ID=mRNA_3065|Name=jgi.p|Nanoce1779_2|584433|organism=Nannochloropsis oceanica|type=CDS|length=2580bp|location=Sequence derived from alignment at scaffold_7:585226..587002+ (Nannochloropsis oceanica)
ATGGCAACTGACGACCTTCCACGCCTGCGTGTCGTGAGCCTTGCTGAAGT
GGATGACCTGGCCAAGCTCAATGAGCCCGTGGAACCCTTGGCCCGCCATC
AGGCCATGGAGATCATCAACGACATCAAGACAAACGGCAAGACCGCCCTT
CTTCAACAAGCCCTCAGACTCGGCGACATCAAATCACTACAAGACCCCAT
TATCCTTGGTCGGGCCGATCTCGAAAAGGCATGGTTGTCCCTCACCGACG
GACAACGTGAAGTGCTCCAACGAACACGAGAGCGGATCGAAGCCTTTGCC
AAAGCCCAACGCAGCGCCATCCAAGACGTCTCAATTTCCATTCCCGGGGG
ATCAGCAGGGCACACCATTGCGCCCATGGCCGTCGCAGGTTGTTACGCCC
CCGGAGGTCGATACCCTCTCCCTTCCTCTGTGCTGATGACAGCGGTAACT
GCCAAAGCAGCAGGCGTGACGAAGGTGTGGGTGGCCTCCCCCCGTCCTTC
TGCCGTGACACTCGGCGCTGCGTTCATTGCGGAAGCAGATGCCTTTTTGG
CAGTCGGTGGGGCACAGGCTGTGGCAGCACTGGCTTATGGAGTGGATGGT
GTGGATGCGAGTGATATAGTTGTTGGGCCGGGGAACAAATGGGTCACTGC
GGCGAAGAGTCTCATTTCGGGCGTTTGTGCGATTGACATGCTGGCAGGGC
CTTCAGAGGTGTTGGTCATCGCGGATGCGACAGCGGACCCGCAGACCATC
GCGGCAGATTTGCTAGCGCAGGCGGAGCATGATGTAGAGGCAAGGCCTAT
TCTGGTGGCGACCTCGAGGAATGTCATCGATCAAGTGAATGATGCCCTGG
TGCAGCAACTCTCCATCCTGCCCACGGGGGAAACAGCCCGCCATGCCGTC
TTAAAGGGGTTTGCGGTGGCGGTTAATAGCGTAGAGGAGTGCATTTTAGT
GTCCGATAAAATTGCCCCTGAGCATCTGGAGATCCAGACGGCTGACGCCA
AAGCCGTCGCTTTCCGCTGTAAGAACTACGGAGCTGTGTTCATTGGTCAT
GGAGCGGCGGAGGTCTTGGGGGATTATGGTGCGGGTCCAAACCATGTGTT
GCCGACAGGTGGCACCGCTAAATATACAGGGGGTTTAAGTGTCTTTACGT
TCTTGAGGGTGCGGACGTGGATGAGTATGGACGACCTGCATGGGGGGCAG
GTGGTGGTGAAGGACGCGGTGGAGCTGGCACGCTTGGAAGGGCTTGAGGG
CCATGCACGGGCGGCAGAGAAGAGGCTTTTGCCGGCGTAAATGGCAACTG
ACGACCTTCCACGCCTGCGTGTCGTGAGCCTTGCTGAAGTGGATGACCTG
GCCAAGCTCAATGAGCCCGTGGAACCCTTGGCCCGCCATCAGGCCATGGA
GATCATCAACGACATCAAGACAAACGGCAAGACCGCCCTTCTTCAACAAG
CCCTCAGACTCGGCGACATCAAATCACTACAAGACCCCATTATCCTTGGT
CGGGCCGATCTCGAAAAGGCATGGTTGTCCCTCACCGACGGACAACGTGA
AGTGCTCCAACGAACACGAGAGCGGATCGAAGCCTTTGCCAAAGCCCAAC
GCAGCGCCATCCAAGACGTCTCAATTTCCATTCCCGGGGGATCAGCAGGG
CACACCATTGCGCCCATGGCCGTCGCAGGTTGTTACGCCCCCGGAGGTCG
ATACCCTCTCCCTTCCTCTGTGCTGATGACAGCGGTAACTGCCAAAGCAG
CAGGCGTGACGAAGGTGTGGGTGGCCTCCCCCCGTCCTTCTGCCGTGACA
CTCGGCGCTGCGTTCATTGCGGAAGCAGATGCCTTTTTGGCAGTCGGTGG
GGCACAGGCTGTGGCAGCACTGGCTTATGGAGTGGATGGTGTGGATGCGA
GTGATATAGTTGTTGGGCCGGGGAACAAATGGGTCACTGCGGCGAAGAGT
CTCATTTCGGGCGTTTGTGCGATTGACATGCTGGCAGGGCCTTCAGAGGT
GTTGGTCATCGCGGATGCGACAGCGGACCCGCAGACCATCGCGGCAGATT
TGCTAGCGCAGGCGGAGCATGATGTAGAGGCAAGGCCTATTCTGGTGGCG
ACCTCGAGGAATGTCATCGATCAAGTGAATGATGCCCTGGTGCAGCAACT
CTCCATCCTGCCCACGGGGGAAACAGCCCGCCATGCCGTCTTAAAGGGGT
TTGCGGTGGCGGTTAATAGCGTAGAGGAGTGCATTTTAGTGTCCGATAAA
ATTGCCCCTGAGCATCTGGAGATCCAGACGGCTGACGCCAAAGCCGTCGC
TTTCCGCTGTAAGAACTACGGAGCTGTGTTCATTGGTCATGGAGCGGCGG
AGGTCTTGGGGGATTATGGTGCGGGTCCAAACCATGTGTTGCCGACAGGT
GGCACCGCTAAATATACAGGGGGTTTAAGTGTCTTTACGTTCTTGAGGGT
GCGGACGTGGATGAGTATGGACGACCTGCATGGGGGGCAGGTGGTGGTGA
AGGACGCGGTGGAGCTGGCACGCTTGGAAGGGCTTGAGGGCCATGCACGG
GCGGCAGAGAAGAGGCTTTTGCCGGCGTAA

Synonyms

Publications