Properties
| Property Name | Value |
|---|
| TranscriptId | 584516 |
| Track | FilteredModels2 |
| ProteinId | 584430 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_7 | supercontig | scaffold_7:581392..583143 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_3063 ID=mRNA_3063|Name=jgi.p|Nanoce1779_2|584430|organism=Nannochloropsis oceanica|type=mRNA|length=1752bp
CAAAGCTGTGTAAGGTATTCCGTCACTCTTCTCTGTCCCACCAGACCAAC
CACGAAATGAAGTAATAGGCAGCCTACACTAGAGAGAAAGGAGAAGAGAG
AAGACAACTAGAAGATAAAGAATGCAGGGGAGAACGTCAACACGATCATC
ATCATCTATAAGAAATAACAACTAGAAAATTTTAATCAATGAATATCACC
TGTTATCCTCTGCAAGACCGTCATCCCACTACAAACAACATCAACGACCG
AAAGGGTTAAAGGCGAGCCCCCAAAATCCGCGAGGCATCAGAATGATGGA
GAGCGGATGTTGAGTTTGCGCTGAAAAGAAGCGAAACCAAAAGTGTATTT
ATACATGTGCACGAAGGAGAAAGAGAGGGGGAATGATTTTCTTTTCGGAA
AAGAAATTTAAGTCCATGTGAAGTTGGAGTTGAATGTGATTCGAGAGCGA
ACAAGAGTAATAGGGACAATCCAGAGAGGTGGGGAAGGATGCCAACGACT
AAAGTGGAAAGGCCACAGAGAGAGGAATAGATCACTTCATGCAATAGGAC
TTCCGTGTTAGCACTTAAGAGGTCAGCAGGACAAAGGAGGGTGGCCTCTT
CTTTCCCTTCTATTTTTTATTCTTTTATAATACTTTTAATTTCATACCAA
TAGGGTTCTTTGCGCTCTCCCTCCCCAGAAGAGCTTTATTTTTTTGGGAA
GATGGTCTTCTTTTTGTTTGTATACACACGGCCACCTGTCGGAAATGAAA
GCGCGGTAGTCAAGAGAGACAAGAGAAGAAAAGAGAATTGGGAGCGAGAA
CGAAGTGGGCAAAAGAAACTTACCTTCCATTAGTTGTCCGCATAGTGTTA
AGCGTCGTTAGATGGTTTGAGGTACGTCTCATTCCTGTCTTTTTCTCTTT
CTCTGAGCTTCGACCGAATATTTGCTGTGAGTATTCCAGATGTAGGTATC
TGTTTATTACTTTTTCATGTTGTCACCCCGTCACTGCTTTCTCTCAATGT
CTTCCATTCTCCATACTCCAGACATGTTTGTCTCGCATGCCTCTCTTTGC
TACTTATTCAAGAGTTGGATGATAAAGACCACAAGATGACATTCCGTGTC
TGCGTATGACCCTTACTGTTTTACGTCCGCTCTCCCTCCATCCCTTCATT
TTTTACATGGCTCTCCCTTCCTCCGCTGCGCTCTTCCCCAAACAGTCCTC
TTTCATTCATTTACATCATGGGTTCCTCTGTTTCATCCCCTTTTCCTTCC
CGACACCGCTACACATTTGCATCTTTCTCCACAGCGTCCCTTACGTTCCT
CCTCTTCCCACATGGGCTAACCCGGCTGCAAGGGCGGTTGCTACCGGCGT
TACGGGGAGGGGCGTCCTCCTTATATTCCTCTTCGTCGGAAAGCCCTCCC
TTCTCCTCTCCCTCTCTGCATGTTTATCGTTCCAAACACAGATCAGCAAC
ACCAGCTGCAGCATCTGGCTTTCACCCGCGTACCTTCGATACGACCTCCG
CCTTCTCCCCCCTCCCTCCTCACTTCCCCTCTTTTCCTACTTCTTGGACG
GCTGTTGTCTCTCCGCTCCCTCCTCCTCTCCCTCGAGACCCAGACCAGAA
CAACTCAATTATTTGTATCTGGCTCCTGCGCGCCCAGGCCCTGTGCTGCC
ATTTCCCTCATCCCTCTCCACTTCCATTCTTCTTCTGTTTCTTCCTCGGC
GACTCTCTCCGTTCCTCCTCCTCCCCTACTCCCTCCTCCTCCTCCTCTTC
CT back to topprotein sequence of jgi.p|Nanoce1779_2|584430 >mRNA_3063-protein ID=mRNA_3063-protein|Name=jgi.p|Nanoce1779_2|584430|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MGSSVSSPFPSRHRYTFASFSTASLTFLLFPHGLTRLQGRLLPALRGGAS
SLYSSSSESPPFSSPSLHVYRSKHRSATPAAASGFHPRTFDTTSAFSPLP
PHFPSFPTSWTAVVSPLPPPLPRDPDQNNSIICIWLLRAQALCCHFPHPS
PLPFFFCFFLGDSLRSSSSPTPSSSSSS back to topmRNA from alignment at scaffold_7:581392..583143+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_3063 ID=mRNA_3063|Name=jgi.p|Nanoce1779_2|584430|organism=Nannochloropsis oceanica|type=mRNA|length=1752bp|location=Sequence derived from alignment at scaffold_7:581392..583143+ (Nannochloropsis oceanica)
CAAAGCTGTGTAAGGTATTCCGTCACTCTTCTCTGTCCCACCAGACCAAC
CACGAAATGAAGTAATAGGCAGCCTACACTAGAGAGAAAGGAGAAGAGAG
AAGACAACTAGAAGATAAAGAATGCAGGGGAGAACGTCAACACGATCATC
ATCATCTATAAGAAATAACAACTAGAAAATTTTAATCAATGAATATCACC
TGTTATCCTCTGCAAGACCGTCATCCCACTACAAACAACATCAACGACCG
AAAGGGTTAAAGGCGAGCCCCCAAAATCCGCGAGGCATCAGAATGATGGA
GAGCGGATGTTGAGTTTGCGCTGAAAAGAAGCGAAACCAAAAGTGTATTT
ATACATGTGCACGAAGGAGAAAGAGAGGGGGAATGATTTTCTTTTCGGAA
AAGAAATTTAAGTCCATGTGAAGTTGGAGTTGAATGTGATTCGAGAGCGA
ACAAGAGTAATAGGGACAATCCAGAGAGGTGGGGAAGGATGCCAACGACT
AAAGTGGAAAGGCCACAGAGAGAGGAATAGATCACTTCATGCAATAGGAC
TTCCGTGTTAGCACTTAAGAGGTCAGCAGGACAAAGGAGGGTGGCCTCTT
CTTTCCCTTCTATTTTTTATTCTTTTATAATACTTTTAATTTCATACCAA
TAGGGTTCTTTGCGCTCTCCCTCCCCAGAAGAGCTTTATTTTTTTGGGAA
GATGGTCTTCTTTTTGTTTGTATACACACGGCCACCTGTCGGAAATGAAA
GCGCGGTAGTCAAGAGAGACAAGAGAAGAAAAGAGAATTGGGAGCGAGAA
CGAAGTGGGCAAAAGAAACTTACCTTCCATTAGTTGTCCGCATAGTGTTA
AGCGTCGTTAGATGGTTTGAGGTACGTCTCATTCCTGTCTTTTTCTCTTT
CTCTGAGCTTCGACCGAATATTTGCTGTGAGTATTCCAGATGTAGGTATC
TGTTTATTACTTTTTCATGTTGTCACCCCGTCACTGCTTTCTCTCAATGT
CTTCCATTCTCCATACTCCAGACATGTTTGTCTCGCATGCCTCTCTTTGC
TACTTATTCAAGAGTTGGATGATAAAGACCACAAGATGACATTCCGTGTC
TGCGTATGACCCTTACTGTTTTACGTCCGCTCTCCCTCCATCCCTTCATT
TTTTACATGGCTCTCCCTTCCTCCGCTGCGCTCTTCCCCAAACAGTCCTC
TTTCATTCATTTACATCATGGGTTCCTCTGTTTCATCCCCTTTTCCTTCC
CGACACCGCTACACATTTGCATCTTTCTCCACAGCGTCCCTTACGTTCCT
CCTCTTCCCACATGGGCTAACCCGGCTGCAAGGGCGGTTGCTACCGGCGT
TACGGGGAGGGGCGTCCTCCTTATATTCCTCTTCGTCGGAAAGCCCTCCC
TTCTCCTCTCCCTCTCTGCATGTTTATCGTTCCAAACACAGATCAGCAAC
ACCAGCTGCAGCATCTGGCTTTCACCCGCGTACCTTCGATACGACCTCCG
CCTTCTCCCCCCTCCCTCCTCACTTCCCCTCTTTTCCTACTTCTTGGACG
GCTGTTGTCTCTCCGCTCCCTCCTCCTCTCCCTCGAGACCCAGACCAGAA
CAACTCAATTATTTGTATCTGGCTCCTGCGCGCCCAGGCCCTGTGCTGCC
ATTTCCCTCATCCCTCTCCACTTCCATTCTTCTTCTGTTTCTTCCTCGGC
GACTCTCTCCGTTCCTCCTCCTCCCCTACTCCCTCCTCCTCCTCCTCTTC
CT back to topCoding sequence (CDS) from alignment at scaffold_7:581392..583143+ >mRNA_3063 ID=mRNA_3063|Name=jgi.p|Nanoce1779_2|584430|organism=Nannochloropsis oceanica|type=CDS|length=535bp|location=Sequence derived from alignment at scaffold_7:581392..583143+ (Nannochloropsis oceanica)
ATGGGTTCCTCTGTTTCATCCCCTTTTCCTTCCCGACACCGCTACACATT
TGCATCTTTCTCCACAGCGTCCCTTACGTTCCTCCTCTTCCCACATGGGC
TAACCCGGCTGCAAGGGCGGTTGCTACCGGCGTTACGGGGAGGGGCGTCC
TCCTTATATTCCTCTTCGTCGGAAAGCCCTCCCTTCTCCTCTCCCTCTCT
GCATGTTTATCGTTCCAAACACAGATCAGCAACACCAGCTGCAGCATCTG
GCTTTCACCCGCGTACCTTCGATACGACCTCCGCCTTCTCCCCCCTCCCT
CCTCACTTCCCCTCTTTTCCTACTTCTTGGACGGCTGTTGTCTCTCCGCT
CCCTCCTCCTCTCCCTCGAGACCCAGACCAGAACAACTCAATTATTTGTA
TCTGGCTCCTGCGCGCCCAGGCCCTGTGCTGCCATTTCCCTCATCCCTCT
CCACTTCCATTCTTCTTCTGTTTCTTCCTCGGCGACTCTCTCCGTTCCTC
CTCCTCCCCTACTCCCTCCTCCTCCTCCTCTTCCT back to top
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