jgi.p|Nanoce1779_2|584427, mRNA_3062 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584427
Unique NamemRNA_3062
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length900
Alignment locationscaffold_7:578989..580162 +

Link to JBrowse

Properties
Property NameValue
TranscriptId584513
TrackFilteredModels2
ProteinId584427
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:578989..580162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584427gene_3062Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584427mRNA_3062-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3062CDS_3062Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3062 ID=mRNA_3062|Name=jgi.p|Nanoce1779_2|584427|organism=Nannochloropsis oceanica|type=mRNA|length=900bp
GCAGCAGCAGCAGCAGCAGCAGCAAATAGCCGCCACCGCAGGGGGAATGG
GTGCGGGTTTGTCGTCTGCGCTTTTTAGTCAAAGTGCTGGTCTCTTGGCC
GCTCAGCAGGCGCAGCAGCAGAATCCCATCCTATCCCAGCAGCAAGCATT
TGCCCAGAGCGTGTACACCAAGTATGGACCGCAATGTAACGGGGGGTACC
CTAGCCCGCTCAAAACACCCGGGGCGCCTATCAAGACCACAGACAGCGAC
AAGGGCCCGGAGGGATGCAATTTGTTTGTCTTTCACATCCCTAACGACAT
GACGAACCTCGACTTATACCAGGCACGACAATTCCTTCCTTTTATTTCTC
CCTCCCCCTGCACTCCCTTCCCTGGTCGCTGTTTATGGGACTCTAATTTC
TCATTCGGTTTTGATTTTCGTGGCCTTTTATACTCGATCAATTCGAAGCA
CTCACCCGCGAACCCTCCCTTCTTTCTTCCCTCCATCCCCCTTCCCTTCA
GATGTTCTCTACCTTCGGTCAAGTCATCTCCGCCCGCATCATGGTCGACA
AGGTCACAGGCCGCTCGCGTGGCTTCGGCTTCGTCAGCTACAACAACCCT
GACTCGGCACTCCAAGCCATCGAGGCAATGAATGGTTTCGTGGTCGGACA
TAAGCGACTCAAGGTGGAGCAGAAAAAAGACAAGTCATCCCTGGGAATGT
CCGGCATGGGTGGATCCATAGGGGGACACGGAGCCCCTTCCTCAGCCTTC
TCTGCCTCTGATACGTTGTCCCCTCACGGCAGTAACCCTTTAATGATTGG
CTCAGGTGGAGCGCCCGCCCCTCTCCACGCGCTGCAGCGGTGGCAAGCGC
ACTTGGCTAGTCAGGCCGCGCTTCAGCAGCAGCAGGTTCAATATGGCGGC
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protein sequence of jgi.p|Nanoce1779_2|584427

>mRNA_3062-protein ID=mRNA_3062-protein|Name=jgi.p|Nanoce1779_2|584427|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MGAGLSSALFSQSAGLLAAQQAQQQNPILSQQQAFAQSVYTKYGPQCNGG
YPSPLKTPGAPIKTTDSDKGPEGCNLFVFHIPNDMTNLDLYQARQFLPFI
SPSPCTPFPGRCLWDSNFSFGFDFRGLLYSINSKHSPANPPFFLPSIPLP
FRCSLPSVKSSPPASWSTRSQAARVASASSATTTLTRHSKPSRQ*
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mRNA from alignment at scaffold_7:578989..580162+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3062 ID=mRNA_3062|Name=jgi.p|Nanoce1779_2|584427|organism=Nannochloropsis oceanica|type=mRNA|length=1174bp|location=Sequence derived from alignment at scaffold_7:578989..580162+ (Nannochloropsis oceanica)
GCAGCAGCAGCAGCAGCAGCAGCAAATAGCCGCCACCGCAGGGGGAATGG
GTGCGGGTTTGTCGTCTGCGCTTTTTAGTCAAAGTGCTGGTCTCTTGGCC
GCTCAGCAGGTATGTATGTGTATGCATGTATGTTTATGTATGTGTATGTA
TGTTTGTGTGTTTACGTATGTGTATGTATGTGTTTGCAATTAATTCCGCC
CGGGCTTTTATATCCGGTCCGTCAGTATGTATCTGCCTATAGCCCACTTA
TTCCGCCTACGCTTTCTTCTTCTCCCACGCTCATGCTATATGTCTTGGCT
CTGTCGTGTGCACGTCACATGCTGCCCTATTTTGGTCATGGTGGATCAAG
TCACGCTTCCCTCTGTTCTCGACCCTCAAACAGGCGCAGCAGCAGAATCC
CATCCTATCCCAGCAGCAAGCATTTGCCCAGAGCGTGTACACCAAGTATG
GACCGCAATGTAACGGGGGGTACCCTAGCCCGCTCAAAACACCCGGGGCG
CCTATCAAGACCACAGACAGCGACAAGGGCCCGGAGGGATGCAATTTGTT
TGTCTTTCACATCCCTAACGACATGACGAACCTCGACTTATACCAGGCAC
GACAATTCCTTCCTTTTATTTCTCCCTCCCCCTGCACTCCCTTCCCTGGT
CGCTGTTTATGGGACTCTAATTTCTCATTCGGTTTTGATTTTCGTGGCCT
TTTATACTCGATCAATTCGAAGCACTCACCCGCGAACCCTCCCTTCTTTC
TTCCCTCCATCCCCCTTCCCTTCAGATGTTCTCTACCTTCGGTCAAGTCA
TCTCCGCCCGCATCATGGTCGACAAGGTCACAGGCCGCTCGCGTGGCTTC
GGCTTCGTCAGCTACAACAACCCTGACTCGGCACTCCAAGCCATCGAGGC
AATGAATGGTTTCGTGGTCGGACATAAGCGACTCAAGGTGGAGCAGAAAA
AAGACAAGTCATCCCTGGGAATGTCCGGCATGGGTGGATCCATAGGGGGA
CACGGAGCCCCTTCCTCAGCCTTCTCTGCCTCTGATACGTTGTCCCCTCA
CGGCAGTAACCCTTTAATGATTGGCTCAGGTGGAGCGCCCGCCCCTCTCC
ACGCGCTGCAGCGGTGGCAAGCGCACTTGGCTAGTCAGGCCGCGCTTCAG
CAGCAGCAGGTTCAATATGGCGGC
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Coding sequence (CDS) from alignment at scaffold_7:578989..580162+

>mRNA_3062 ID=mRNA_3062|Name=jgi.p|Nanoce1779_2|584427|organism=Nannochloropsis oceanica|type=CDS|length=1170bp|location=Sequence derived from alignment at scaffold_7:578989..580162+ (Nannochloropsis oceanica)
ATGGGTGCGGGTTTGTCGTCTGCGCTTTTTAGTCAAAGTGCTGGTCTCTT
GGCCGCTCAGCAGGCGCAGCAGCAGAATCCCATCCTATCCCAGCAGCAAG
CATTTGCCCAGAGCGTGTACACCAAGTATGGACCGCAATGTAACGGGGGG
TACCCTAGCCCGCTCAAAACACCCGGGGCGCCTATCAAGACCACAGACAG
CGACAAGGGCCCGGAGGGATGCAATTTGTTTGTCTTTCACATCCCTAACG
ACATGACGAACCTCGACTTATACCAGGCACGACAATTCCTTCCTTTTATT
TCTCCCTCCCCCTGCACTCCCTTCCCTGGTCGCTGTTTATGGGACTCTAA
TTTCTCATTCGGTTTTGATTTTCGTGGCCTTTTATACTCGATCAATTCGA
AGCACTCACCCGCGAACCCTCCCTTCTTTCTTCCCTCCATCCCCCTTCCC
TTCAGATGTTCTCTACCTTCGGTCAAGTCATCTCCGCCCGCATCATGGTC
GACAAGGTCACAGGCCGCTCGCGTGGCTTCGGCTTCGTCAGCTACAACAA
CCCTGACTCGGCACTCCAAGCCATCGAGGCAATGAATGGGTGCGGGTTTG
TCGTCTGCGCTTTTTAGTCAAAGTGCTGGTCTCTTGGCCGCTCAGCAGGC
GCAGCAGCAGAATCCCATCCTATCCCAGCAGCAAGCATTTGCCCAGAGCG
TGTACACCAAGTATGGACCGCAATGTAACGGGGGGTACCCTAGCCCGCTC
AAAACACCCGGGGCGCCTATCAAGACCACAGACAGCGACAAGGGCCCGGA
GGGATGCAATTTGTTTGTCTTTCACATCCCTAACGACATGACGAACCTCG
ACTTATACCAGGCACGACAATTCCTTCCTTTTATTTCTCCCTCCCCCTGC
ACTCCCTTCCCTGGTCGCTGTTTATGGGACTCTAATTTCTCATTCGGTTT
TGATTTTCGTGGCCTTTTATACTCGATCAATTCGAAGCACTCACCCGCGA
ACCCTCCCTTCTTTCTTCCCTCCATCCCCCTTCCCTTCAGATGTTCTCTA
CCTTCGGTCAAGTCATCTCCGCCCGCATCATGGTCGACAAGGTCACAGGC
CGCTCGCGTGGCTTCGGCTTCGTCAGCTACAACAACCCTGACTCGGCACT
CCAAGCCATCGAGGCAATGA
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Synonyms
Publications