jgi.p|Nanoce1779_2|584412, mRNA_3059 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584412
Unique NamemRNA_3059
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length537
Alignment locationscaffold_7:567828..568546 -

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Properties
Property NameValue
TranscriptId584498
TrackFilteredModels2
ProteinId584412
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:567828..568546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584412gene_3059Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584412mRNA_3059-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3059CDS_3059Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3059 ID=mRNA_3059|Name=jgi.p|Nanoce1779_2|584412|organism=Nannochloropsis oceanica|type=mRNA|length=537bp
CAACAGGTACAATGGACAAGTGGCTGCGAAAGATCGACCGCTATTCCCCT
TTCCCATTATTCTTAGTTGGCCTGTTCGCGGGCTGTACTTTGACATTTCT
TTTGAGCCGTCCAAACCATCAAACGATGCCACAGAAACCTGTCGTCGCCA
CTGCCAGTCACCCACGCAGACCAGTCCCAGGTGCCTTCTGGTTGGTTGTA
TCCGTGACTTTCCGAAGATCTGAGGACGTGGAGATCTTTAAGGCCGCCTT
TGCACCGCTTGCCGTCGTCGTAAAAGAAAACGAAGCCGGCACATTGTCAT
ATGGTTTGGCCATAAGTGACAAGGACCCTCTCATGGTCCTAATATTCGAG
CGCTACGTAGACAAGGATGATGCGTATCTGCGTGTACATCGAAGTAGTGA
GTCGTTCCAGGTGTTTCGTCCCCAGCTTGCGGCCTTGAAAGCGAACATTT
CGGGAGAGTCTTATATCGAGAGCGACTTGGGGTTTGTGTGAGTCAAAGCG
ATGGAGACTTTGTGAATAAATATTTTCGACAAAAAAT
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protein sequence of jgi.p|Nanoce1779_2|584412

>mRNA_3059-protein ID=mRNA_3059-protein|Name=jgi.p|Nanoce1779_2|584412|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MDKWLRKIDRYSPFPLFLVGLFAGCTLTFLLSRPNHQTMPQKPVVATASH
PRRPVPGAFWLVVSVTFRRSEDVEIFKAAFAPLAVVVKENEAGTLSYGLA
ISDKDPLMVLIFERYVDKDDAYLRVHRSSESFQVFRPQLAALKANISGES
YIESDLGFV*
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mRNA from alignment at scaffold_7:567828..568546-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3059 ID=mRNA_3059|Name=jgi.p|Nanoce1779_2|584412|organism=Nannochloropsis oceanica|type=mRNA|length=719bp|location=Sequence derived from alignment at scaffold_7:567828..568546- (Nannochloropsis oceanica)
CAACAGGTACAATGGACAAGTGGCTGCGAAAGATCGACCGCTATTCCCCT
TTCCCATTATTCTTAGTTGGCCTGTTCGCGGGCTGTACTTTGACATTTCT
TTTGAGCCGTCCAAACCATCAAACGATGCCACAGAAACCTGTCGTCGCCA
CTGCCAGTCACCCACGCAGACCAGTCCCAGGTTCGTGTTTGGAGGACAGC
AGAGGCCCCTTGCAAAAGTTCTGATTTTCACAACTTGTTCAGTGACTCGC
ACTTTGCGAGGCGATCCAAAGGCTCCTCTTCCTTGCTTACTCCTCGTTTG
CCACCCACCTTCCCATTATTTGTCCCCCTAAACTCCCCTTTCGCTCTTTT
TCAAATCCGTAGGTGCCTTCTGGTTGGTTGTATCCGTGACTTTCCGAAGA
TCTGAGGACGTGGAGATCTTTAAGGCCGCCTTTGCACCGCTTGCCGTCGT
CGTAAAAGAAAACGAAGCCGGCACATTGTCATATGGTTTGGCCATAAGTG
ACAAGGACCCTCTCATGGTCCTAATATTCGAGCGCTACGTAGACAAGGAT
GATGCGTATCTGCGTGTACATCGAAGTAGTGAGTCGTTCCAGGTGTTTCG
TCCCCAGCTTGCGGCCTTGAAAGCGAACATTTCGGGAGAGTCTTATATCG
AGAGCGACTTGGGGTTTGTGTGAGTCAAAGCGATGGAGACTTTGTGAATA
AATATTTTCGACAAAAAAT
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Coding sequence (CDS) from alignment at scaffold_7:567828..568546-

>mRNA_3059 ID=mRNA_3059|Name=jgi.p|Nanoce1779_2|584412|organism=Nannochloropsis oceanica|type=CDS|length=960bp|location=Sequence derived from alignment at scaffold_7:567828..568546- (Nannochloropsis oceanica)
GTGCCTTCTGGTTGGTTGTATCCGTGACTTTCCGAAGATCTGAGGACGTG
GAGATCTTTAAGGCCGCCTTTGCACCGCTTGCCGTCGTCGTAAAAGAAAA
CGAAGCCGGCACATTGTCATATGGTTTGGCCATAAGTGACAAGGACCCTC
TCATGGTCCTAATATTCGAGCGCTACGTAGACAAGGATGATGCGTATCTG
CGTGTACATCGAAGTAGTGAGTCGTTCCAGGTGTTTCGTCCCCAGCTTGC
GGCCTTGAAAGCGAACATTTCGGGAGAGTCTTATATCGAGAGCGACTTGG
GGTTTGTGTGAATGGACAAGTGGCTGCGAAAGATCGACCGCTATTCCCCT
TTCCCATTATTCTTAGTTGGCCTGTTCGCGGGCTGTACTTTGACATTTCT
TTTGAGCCGTCCAAACCATCAAACGATGCCACAGAAACCTGTCGTCGCCA
CTGCCAGTCACCCACGCAGACCAGTCCCAGGTGCCTTCTGGTTGGTTGTA
TCCGTGACTTTCCGAAGATCTGAGGACGTGGAGATCTTTAAGGCCGCCTT
TGCACCGCTTGCCGTCGTCGTAAAAGAAAACGAAGCCGGCACATTGTCAT
ATGGTTTGGCCATAAGTGACAAGGACCCTCTCATGGTCCTAATATTCGAG
CGCTACGTAGACAAGGATGATGCGTATCTGCGTGTACATCGAAGTAGTGA
GTCGTTCCAGGTGTTTCGTCCCCAGCTTGCGGCCTTGAAAGCGAACATTT
CGGGAGAGTCTTATATCGAGAGCGACTTGGGGTTTGTGTGAATGGACAAG
TGGCTGCGAAAGATCGACCGCTATTCCCCTTTCCCATTATTCTTAGTTGG
CCTGTTCGCGGGCTGTACTTTGACATTTCTTTTGAGCCGTCCAAACCATC
AAACGATGCCACAGAAACCTGTCGTCGCCACTGCCAGTCACCCACGCAGA
CCAGTCCCAG
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Synonyms
Publications