jgi.p|Nanoce1779_2|584406, mRNA_3058 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584406
Unique NamemRNA_3058
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1164
Alignment locationscaffold_7:566493..567827 +

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Properties
Property NameValue
TranscriptId584492
TrackFilteredModels2
ProteinId584406
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:566493..567827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584406gene_3058Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584406mRNA_3058-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3058CDS_3058Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3058 ID=mRNA_3058|Name=jgi.p|Nanoce1779_2|584406|organism=Nannochloropsis oceanica|type=mRNA|length=1164bp
ACAAATTTGTGCGGCGAATCCCGGAAGTGTCAGGTGAGACAGAACATTTG
CCAAGCTATTTGTTTACAATACTTACTTTGTGGTGCTCCACACAACGTCT
CTTTTACCGCCTGGTCCGCCATCACACAGCAAGCAAGCTAACTCAACACA
CAAGTCAGCTCTACATTAGAACCATGTCGGCACGCCACGGACAAGGAAGT
CGGGATGAGGAGATGAAGGAAGCAGTAAATGAGACAATTCAATCCAGCAT
TCAGCAAGGGAAGGAAGCCTTTGAGCACTTGAAGGAAGACCCTGGGGACA
ATTTGTTGAGCGTCGCGCTCCTCATCCATGCTGCGGTCAACATGTGGCAG
TCGGTCATGTTAATCTGGCGCCCGCAGCAAATGGTGTCCGGTCTTCTGGG
TGGCATCGAGACGAAATGGCACGGCAGCAGCCAGTGGTCACTTTTGCGTT
GCCTCGCGTTCCAGACGCTCGCCATGGGCCTGGCGACCGGCGGCGCGGCG
ATCAAGTACTCTTCTAAGGACAAGGCGATCCTCAATTCGATCTTGCTGGC
CTTCCATGCCGTTACTATGAGCGATATGTTATATTACAAGTGGTATAAGG
AAAGTAGCTTTTCCTACACGCCATTATTTTTTCACTTGCCTATGCTTGCC
CTCCACACGCTTGCCCTCCTCGGGTACAATAAGAGCGAGGCTATGAGCAC
GGGGATGCAGACGCGCAGCAAAACCAAGCGCACGTAAGGGGAGGGGGAAA
CATGCTGGAAGACGTCGACAGGCAACAATTGCCGGCGGGAAAGCATAGGC
GGGATTGTCAATGAGTAATTTTGAGGGTATGGCCACGAGATAGAGCTGGC
TTATGATCTCTGAATGTAAAAGAGAGAGATGAGGTACGGCATGGGGAATA
TCAAAGAGAAAGAAAAAGCATGGAAAAGACACGCCTTAAATGAAGTTGCT
TAGGCTGGACTTGTGCATGTAGCAAAGAGAAAGAGAGAAGAGTCCCTAGG
AGAGCGTATTGATATAAGGAGGGTGCACTGAGGCTAATGCTTCAAAGCTG
ATTCCTGGGACGAAGCACACGGCAGATTTAAAAAAAAGACACTTGTCGGG
ATGTGAACAAAAAGGCAAAGAGAGAGAGAAGTGAGAGGAAAATGGAAAGG
ATATACAGATCTAG
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protein sequence of jgi.p|Nanoce1779_2|584406

>mRNA_3058-protein ID=mRNA_3058-protein|Name=jgi.p|Nanoce1779_2|584406|organism=Nannochloropsis oceanica|type=polypeptide|length=188bp
MSARHGQGSRDEEMKEAVNETIQSSIQQGKEAFEHLKEDPGDNLLSVALL
IHAAVNMWQSVMLIWRPQQMVSGLLGGIETKWHGSSQWSLLRCLAFQTLA
MGLATGGAAIKYSSKDKAILNSILLAFHAVTMSDMLYYKWYKESSFSYTP
LFFHLPMLALHTLALLGYNKSEAMSTGMQTRSKTKRT*
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mRNA from alignment at scaffold_7:566493..567827+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3058 ID=mRNA_3058|Name=jgi.p|Nanoce1779_2|584406|organism=Nannochloropsis oceanica|type=mRNA|length=1335bp|location=Sequence derived from alignment at scaffold_7:566493..567827+ (Nannochloropsis oceanica)
ACAAATTTGTGCGGCGAATCCCGGAAGTGTCAGGTGAGACAGAACATTTG
CCAAGCTATTTGTTTACAATACTTACTTTGTGGTGCTCCACACAACGTCT
CTTTTACCGCCTGGTCCGCCATCACACAGCAAGCAAGCTAACTCAACACA
CAAGTCAGCTCTACATTAGAACCATGTCGGCACGCCACGGACAAGGAAGT
CGGGTAAGTTGCGGACGGGGATTCACTTAGCGTTTAAAACTTGCCGCTAC
CTCTCCATGTCCTCAGCATTCACTCTCTCTCCGGTTGGATGAATTTCCCT
TAAATTGAATTGCAAAGTTTTTTATGCTCCACGTCTTTACGTTTCTTCAC
TTCATATCAACTCACTCCCCGTAGGATGAGGAGATGAAGGAAGCAGTAAA
TGAGACAATTCAATCCAGCATTCAGCAAGGGAAGGAAGCCTTTGAGCACT
TGAAGGAAGACCCTGGGGACAATTTGTTGAGCGTCGCGCTCCTCATCCAT
GCTGCGGTCAACATGTGGCAGTCGGTCATGTTAATCTGGCGCCCGCAGCA
AATGGTGTCCGGTCTTCTGGGTGGCATCGAGACGAAATGGCACGGCAGCA
GCCAGTGGTCACTTTTGCGTTGCCTCGCGTTCCAGACGCTCGCCATGGGC
CTGGCGACCGGCGGCGCGGCGATCAAGTACTCTTCTAAGGACAAGGCGAT
CCTCAATTCGATCTTGCTGGCCTTCCATGCCGTTACTATGAGCGATATGT
TATATTACAAGTGGTATAAGGAAAGTAGCTTTTCCTACACGCCATTATTT
TTTCACTTGCCTATGCTTGCCCTCCACACGCTTGCCCTCCTCGGGTACAA
TAAGAGCGAGGCTATGAGCACGGGGATGCAGACGCGCAGCAAAACCAAGC
GCACGTAAGGGGAGGGGGAAACATGCTGGAAGACGTCGACAGGCAACAAT
TGCCGGCGGGAAAGCATAGGCGGGATTGTCAATGAGTAATTTTGAGGGTA
TGGCCACGAGATAGAGCTGGCTTATGATCTCTGAATGTAAAAGAGAGAGA
TGAGGTACGGCATGGGGAATATCAAAGAGAAAGAAAAAGCATGGAAAAGA
CACGCCTTAAATGAAGTTGCTTAGGCTGGACTTGTGCATGTAGCAAAGAG
AAAGAGAGAAGAGTCCCTAGGAGAGCGTATTGATATAAGGAGGGTGCACT
GAGGCTAATGCTTCAAAGCTGATTCCTGGGACGAAGCACACGGCAGATTT
AAAAAAAAGACACTTGTCGGGATGTGAACAAAAAGGCAAAGAGAGAGAGA
AGTGAGAGGAAAATGGAAAGGATATACAGATCTAG
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Coding sequence (CDS) from alignment at scaffold_7:566493..567827+

>mRNA_3058 ID=mRNA_3058|Name=jgi.p|Nanoce1779_2|584406|organism=Nannochloropsis oceanica|type=CDS|length=1128bp|location=Sequence derived from alignment at scaffold_7:566493..567827+ (Nannochloropsis oceanica)
ATGTCGGCACGCCACGGACAAGGAAGTCGGGATGAGGAGATGAAGGAAGC
AGTAAATGAGACAATTCAATCCAGCATTCAGCAAGGGAAGGAAGCCTTTG
AGCACTTGAAGGAAGACCCTGGGGACAATTTGTTGAGCGTCGCGCTCCTC
ATCCATGCTGCGGTCAACATGTGGCAGTCGGTCATGTTAATCTGGCGCCC
GCAGCAAATGGTGTCCGGTCTTCTGGGTGGCATCGAGACGAAATGGCACG
GCAGCAGCCAGTGGTCACTTTTGCGTTGCCTCGCGTTCCAGACGCTCGCC
ATGGGCCTGGCGACCGGCGGCGCGGCGATCAAGTACTCTTCTAAGGACAA
GGCGATCCTCAATTCGATCTTGCTGGCCTTCCATGCCGTTACTATGAGCG
ATATGTTATATTACAAGTGGTATAAGGAAAGTAGCTTTTCCTACACGCCA
TTATTTTTTCACTTGCCTATGCTTGCCCTCCACACGCTTGCCCTCCTCGG
GTACAATAAGAGCGAGGCTATGAGCACGGGGATGCAGACGCGCAGCAAAA
CCAAGCGCACGTAAATGTCGGCACGCCACGGACAAGGAAGTCGGGATGAG
GAGATGAAGGAAGCAGTAAATGAGACAATTCAATCCAGCATTCAGCAAGG
GAAGGAAGCCTTTGAGCACTTGAAGGAAGACCCTGGGGACAATTTGTTGA
GCGTCGCGCTCCTCATCCATGCTGCGGTCAACATGTGGCAGTCGGTCATG
TTAATCTGGCGCCCGCAGCAAATGGTGTCCGGTCTTCTGGGTGGCATCGA
GACGAAATGGCACGGCAGCAGCCAGTGGTCACTTTTGCGTTGCCTCGCGT
TCCAGACGCTCGCCATGGGCCTGGCGACCGGCGGCGCGGCGATCAAGTAC
TCTTCTAAGGACAAGGCGATCCTCAATTCGATCTTGCTGGCCTTCCATGC
CGTTACTATGAGCGATATGTTATATTACAAGTGGTATAAGGAAAGTAGCT
TTTCCTACACGCCATTATTTTTTCACTTGCCTATGCTTGCCCTCCACACG
CTTGCCCTCCTCGGGTACAATAAGAGCGAGGCTATGAGCACGGGGATGCA
GACGCGCAGCAAAACCAAGCGCACGTAA
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Synonyms
Publications